Lsi10G013560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G013560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Forkhead box protein G1
Location	chr10: 17768138 .. 17768479 (+)
RNA-Seq Expression	Lsi10G013560
Synteny	Lsi10G013560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATCTCTTTCCTCAACCGCTTCTCTCTGGATCCGCCGCACTGTCGCACCGCCGCAAAATGGACGGCTCTATTAACACTAACCGCCGCCGTGGCCTCCTTCGCTCCAGAGTTCATTTTCGCAAATGCAACGTCTCTCCATTCGTCGTTCTCCAAATCTTGCCGTCGTGATGGCTACATCAGGATCCCGCTTGACCTTCCCGGCGATGTTCTCTGCCTGCCGGCGAAAATGGTGAATCGGTCCAGTTTGGATTTCTTCGTTCCTACTGTCTTTGCGGCTCTCGGCGTCGGCGTTTCGGCTTGCTTCGTTAGATCCTTGGGATTGTGGGAAGAATTCTGA

mRNA sequence

ATGCCAATCTCTTTCCTCAACCGCTTCTCTCTGGATCCGCCGCACTGTCGCACCGCCGCAAAATGGACGGCTCTATTAACACTAACCGCCGCCGTGGCCTCCTTCGCTCCAGAGTTCATTTTCGCAAATGCAACGTCTCTCCATTCGTCGTTCTCCAAATCTTGCCGTCGTGATGGCTACATCAGGATCCCGCTTGACCTTCCCGGCGATGTTCTCTGCCTGCCGGCGAAAATGGTGAATCGGTCCAGTTTGGATTTCTTCGTTCCTACTGTCTTTGCGGCTCTCGGCGTCGGCGTTTCGGCTTGCTTCGTTAGATCCTTGGGATTGTGGGAAGAATTCTGA

Coding sequence (CDS)

ATGCCAATCTCTTTCCTCAACCGCTTCTCTCTGGATCCGCCGCACTGTCGCACCGCCGCAAAATGGACGGCTCTATTAACACTAACCGCCGCCGTGGCCTCCTTCGCTCCAGAGTTCATTTTCGCAAATGCAACGTCTCTCCATTCGTCGTTCTCCAAATCTTGCCGTCGTGATGGCTACATCAGGATCCCGCTTGACCTTCCCGGCGATGTTCTCTGCCTGCCGGCGAAAATGGTGAATCGGTCCAGTTTGGATTTCTTCGTTCCTACTGTCTTTGCGGCTCTCGGCGTCGGCGTTTCGGCTTGCTTCGTTAGATCCTTGGGATTGTGGGAAGAATTCTGA

Protein sequence

MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGYIRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF

Homology

[Close]

BLAST of Lsi10G013560 vs. ExPASy TrEMBL
Match: A0A5A7V3R2 (Forkhead box protein G1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00490 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGY 60
           MPISFL+RFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFS+SCRRDGY
Sbjct: 1   MPISFLHRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSRSCRRDGY 60

Query: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF 114
           IRIPLDLPGDVLCLPA MVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF
Sbjct: 61  IRIPLDLPGDVLCLPANMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF 113

[Close]

BLAST of Lsi10G013560 vs. ExPASy TrEMBL
Match: A0A1S3BKF6 (uncharacterized protein LOC103490587 OS=Cucumis melo OX=3656 GN=LOC103490587 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGY 60
           MPISFL+RFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFS+SCRRDGY
Sbjct: 1   MPISFLHRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSRSCRRDGY 60

Query: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF 114
           IRIPLDLPGDVLCLPA MVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF
Sbjct: 61  IRIPLDLPGDVLCLPANMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF 113

[Close]

BLAST of Lsi10G013560 vs. ExPASy TrEMBL
Match: A0A0A0KEV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303790 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 98/109 (89.91%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGY 60
           M ISFL+RFSLDP HCR+AAKWTALLTLTAAV SFAPEFIF NATSLHSSFS+SC RDGY
Sbjct: 1   MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY 60

Query: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGL 110
           IRIPLDLPGDVLCLPA MVN SS DFFVPTVFAALGVGVSACFVRSLGL
Sbjct: 61  IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 109

[Close]

BLAST of Lsi10G013560 vs. ExPASy TrEMBL
Match: A0A6J1D3X8 (uncharacterized protein LOC111017044 OS=Momordica charantia OX=3673 GN=LOC111017044 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.2e-47
Identity = 101/111 (90.99%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGY 60
           M ISFL RFSL PPHC TAAKWTALLTLTAAVASFAPEFIF NATSL SSFSKSCRRDGY
Sbjct: 12  MAISFL-RFSLYPPHCLTAAKWTALLTLTAAVASFAPEFIFTNATSLSSSFSKSCRRDGY 71

Query: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWE 112
           IRIPLDLPGDVLCLPAKMV RSSLDFFVPTVFAALGVGVS CFVRS GL E
Sbjct: 72  IRIPLDLPGDVLCLPAKMVTRSSLDFFVPTVFAALGVGVSVCFVRSFGLLE 121

[Close]

BLAST of Lsi10G013560 vs. ExPASy TrEMBL
Match: A0A2I4EV00 (uncharacterized protein LOC108992958 OS=Juglans regia OX=51240 GN=LOC108992958 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 65/93 (69.89%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 19  AAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGYIRIPLDLPGDVLCLPAKM 78
           AA WT LLTLT AVASFAPE  F +A S  SSFSKSC  DG++RIPLD P +V+C PA +
Sbjct: 23  AATWTVLLTLTVAVASFAPEIAFVSAISPSSSFSKSCHADGFVRIPLDNPMEVMCFPAHL 82

Query: 79  VNRSSLDFFVPTVFAALGVGVSACFVRSLGLWE 112
           V RS LDFF+PTVFAAL V  SAC VRSLGLWE
Sbjct: 83  VRRSKLDFFLPTVFAALVVACSACMVRSLGLWE 115

[Close]

BLAST of Lsi10G013560 vs. NCBI nr
Match: XP_008448381.1 (PREDICTED: uncharacterized protein LOC103490587 [Cucumis melo] >KAA0061944.1 forkhead box protein G1 [Cucumis melo var. makuwa] >TYK23985.1 forkhead box protein G1 [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 5.2e-56
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGY 60
           MPISFL+RFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFS+SCRRDGY
Sbjct: 1   MPISFLHRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSRSCRRDGY 60

Query: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF 114
           IRIPLDLPGDVLCLPA MVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF
Sbjct: 61  IRIPLDLPGDVLCLPANMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF 113

[Close]

BLAST of Lsi10G013560 vs. NCBI nr
Match: XP_038900397.1 (uncharacterized protein LOC120087630 [Benincasa hispida])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 108/113 (95.58%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGY 60
           MPISFL+RFSLDPPHCR+AAKWTALL LTAAVASFAPEFIF NATS HSSFSKSCRRDGY
Sbjct: 1   MPISFLHRFSLDPPHCRSAAKWTALLALTAAVASFAPEFIFTNATSPHSSFSKSCRRDGY 60

Query: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF 114
           IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF
Sbjct: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWEEF 113

[Close]

BLAST of Lsi10G013560 vs. NCBI nr
Match: XP_031742493.1 (uncharacterized protein LOC105435838 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 3.4e-47
Identity = 98/109 (89.91%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGY 60
           M ISFL+RFSLDP HCR+AAKWTALLTLTAAV SFAPEFIF NATSLHSSFS+SC RDGY
Sbjct: 1   MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY 60

Query: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGL 110
           IRIPLDLPGDVLCLPA MVN SS DFFVPTVFAALGVGVSACFVRSLGL
Sbjct: 61  IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGL 109

[Close]

BLAST of Lsi10G013560 vs. NCBI nr
Match: KAE8647072.1 (hypothetical protein Csa_023019 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 9.9e-47
Identity = 97/108 (89.81%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGY 60
           M ISFL+RFSLDP HCR+AAKWTALLTLTAAV SFAPEFIF NATSLHSSFS+SC RDGY
Sbjct: 1   MAISFLHRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCGRDGY 60

Query: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLG 109
           IRIPLDLPGDVLCLPA MVN SS DFFVPTVFAALGVGVSACFVRSLG
Sbjct: 61  IRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLG 108

[Close]

BLAST of Lsi10G013560 vs. NCBI nr
Match: XP_022148378.1 (uncharacterized protein LOC111017044 [Momordica charantia])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 101/111 (90.99%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MPISFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGY 60
           M ISFL RFSL PPHC TAAKWTALLTLTAAVASFAPEFIF NATSL SSFSKSCRRDGY
Sbjct: 12  MAISFL-RFSLYPPHCLTAAKWTALLTLTAAVASFAPEFIFTNATSLSSSFSKSCRRDGY 71

Query: 61  IRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWE 112
           IRIPLDLPGDVLCLPAKMV RSSLDFFVPTVFAALGVGVS CFVRS GL E
Sbjct: 72  IRIPLDLPGDVLCLPAKMVTRSSLDFFVPTVFAALGVGVSVCFVRSFGLLE 121

[Close]

BLAST of Lsi10G013560 vs. TAIR 10
Match: AT2G37530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-22
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 4   SFLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSS--FSKSCRRDGYI 63
           S  +RF+   PH    A WT  LTLT A+ S APEF F +A    SS  FS+ C     I
Sbjct: 8   SLTHRFAWRIPHFVYGATWTLFLTLTVAIISLAPEFAFVSAIFPSSSEVFSRRCGSYAAI 67

Query: 64  RIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLGLWE 112
            +PLDLP +VLCLPA +  RS +D  VP VFAA+ V +SA  VR++GLWE
Sbjct: 68  LVPLDLPSEVLCLPANLFRRSKMDLVVPPVFAAIVVALSAVVVRTMGLWE 117

[Close]

BLAST of Lsi10G013560 vs. TAIR 10
Match: AT1G07795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-18
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 5   FLNRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSC-RRDGYIRI 64
           FL   S   P    AA WT LL  T AVASFAPE  F       S+ S SC   DG+++I
Sbjct: 12  FLRSVSDRWPVIAQAATWTVLLMFTVAVASFAPEMAFV------STVSSSCGGGDGFVKI 71

Query: 65  PLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRS 107
           P+D  G+ +C+P+ MV RS  D FVP++FAA+ V  SAC +RS
Sbjct: 72  PMDFAGESICVPSNMVKRSRFDLFVPSIFAAVMVTASACLIRS 108

[Close]

BLAST of Lsi10G013560 vs. TAIR 10
Match: AT2G28725.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-15
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 20  AKWTALLTLTAAVASFAPEFIFANATSLHSSFSKSCRRDGYIRIPLDLPGDVLCLPAKMV 79
           A WT LL +T A+ASFAPE  F   + L SS       DG++RIP+DLPG++L LP++MV
Sbjct: 19  ATWTILLMITVALASFAPEMAF--VSKLKSS------SDGFVRIPMDLPGEMLILPSEMV 78

Query: 80  NRSSLDFFVPTVFAALGVGVSACFVRS 107
             S LD F+PT+FA + V  S   +RS
Sbjct: 79  KNSYLDVFLPTIFAGVMVIASVSLLRS 97

The following BLAST results are available for this feature:

BLAST of Lsi10G013560 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G013560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3R2	2.5e-56	97.35	Forkhead box protein G1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BKF6	2.5e-56	97.35	uncharacterized protein LOC103490587 OS=Cucumis melo OX=3656 GN=LOC103490587 PE=...	[more]
A0A0A0KEV4	1.6e-47	89.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303790 PE=4 SV=1	[more]
A0A6J1D3X8	8.2e-47	90.99	uncharacterized protein LOC111017044 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A2I4EV00	1.4e-27	69.89	uncharacterized protein LOC108992958 OS=Juglans regia OX=51240 GN=LOC108992958 P...	[more]

BLAST of Lsi10G013560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448381.1	5.2e-56	97.35	PREDICTED: uncharacterized protein LOC103490587 [Cucumis melo] >KAA0061944.1 for...	[more]
XP_038900397.1	1.3e-54	95.58	uncharacterized protein LOC120087630 [Benincasa hispida]	[more]
XP_031742493.1	3.4e-47	89.91	uncharacterized protein LOC105435838 [Cucumis sativus]	[more]
KAE8647072.1	9.9e-47	89.81	hypothetical protein Csa_023019 [Cucumis sativus]	[more]
XP_022148378.1	1.7e-46	90.99	uncharacterized protein LOC111017044 [Momordica charantia]	[more]

BLAST of Lsi10G013560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37530.1	1.8e-22	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G07795.1	2.1e-18	47.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G28725.1	2.8e-15	49.43	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34658:SF5	BNACNNG38900D PROTEIN	coord: 3..112
None	No IPR available	PANTHER	PTHR34658	OS01G0151800 PROTEIN	coord: 3..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G013560.1	Lsi10G013560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane