Lsi10G013250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G013250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	WUSCHEL-related homeobox 3
Location	chr10: 17468044 .. 17469700 (+)
RNA-Seq Expression	Lsi10G013250
Synteny	Lsi10G013250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAACAAACAAAAAAAAATATAAAAAAAAAAATAATGTCCCCAGCAGGTATTACTACAACTCCTTCAAGATGGTGTCCAACTCCAGAACAAGTCATGATTTTGGAGGAAATTTACAGAAATGGGCTTAAAACACCCAATGCCACTCAAATTCAGCATATTACTTCCCATCTTTCTTTGTATGGTAAAATTGAAGGCAAAAATGTGTTTTATTGGTTTCAAAATCACAAGGCTAGAGATCGCCAGAAGTTAAGAAGGAAGCTTTATAAACAGCTTCAACAACATCATTTTTTTATGAAACGTCACCGTTTTGATGACCATAATCACTTCTTCCAGTACTTCCTTCCCCAGCACCACCAGCTTGTACCGCAACTACTCCCGCTTCCATCTCCGGCCTCTTCTCATCAGGTACTTCTCTTTTCTATATTACTATTCATTTTTTTTTTGGACTTTTTAGAGCTATGTTCAGACCGATAATTTTTATATATGTGGATACAAAATTTAAAAAAAAAAATATTTAGGTGCATTCTAGGTTGCACGTATGTTTGTGCAGCCACCAAAGTACTTAATTATAAATTTTAACGTGACAAACATTTTTTTTTAAAAAATTTTTTTTAGATTTTTTTTTTTAAATTAAAAGAAATGCATGAATGAAGTGAAGACGACTACACTTAGTATTTTTCAAGTTTAATTTGTACTATAAGTCTAATTATTGTAACTTAACATGGGAAAAATTGGAAGTTTCTATCTTAAGAGAAAGATTGGGTGGACAATTACAAATATAACAATCAAATTTAAAATATTATTATATATAACAACATTTTTTAAAAATTGCAAATATAGCAAAGTCTATTAGTGATAGACTTTAATGGTTTAAGTACTCTATCACTGATAGACCATTAAAGTCTATCCGTAATATAAGTCTTTTACTCATTATAAATACCCCATACTAAGGGACACGTAACCGTTTTTTATGGTTTTTTTTCTTCAAAATATAGCATGAATACGGGTTTTTTTTTTAAATGGTTGAGTTTGAATTCTGCTGTTTTTATTTATTATTATTTTTTTAGAAGAAATTCAAAATTTTAACGAGAATATATACATATTTATTAGGCAAATTTTACCAACAGAAAAAATGTCAAACTATTTACAGAAAATAGTAAAATAAATACTGATAGACATTGATAGACTTCTATCAGCATCTATCAGTGATAGACTTCTATTATTTATATTCTTGATAGATCCTGATAAACTTCTATCCGCATCTATCACAACTATCTAAAAATTTTGTTATTTTAGGTAAATAGTTTCCCTTATTTTTTTATTTTTAAAACTTCCCCAATTTATTACATGGTATTTATATTTTTATTTTATAACTATGTTGGTTATTTATGTGAATGCTATTTTAATTTTGAATGTAATGAAATTAAGGAGTTTTTGTTTATGCAGAGGGAGGGTGAAGAGGAGCCGGCGACGGAGGTGGAGGGTGGTGGGAGGACGTGGTTGGGCGACGATGAGGGGACGACGGTGGCGGAGGAAGATGGAGAGACGACATGTCGTACTGGGACTTTGAGGACGTTGGAGCTGTTTCCAGTGAGAGCGAGTTGGGTAGAGGAGGAAGAAGGCACGAGTGGAAACGGTGGATGGGGGAATTAA

mRNA sequence

AAACAAACAAACAAAAAAAAATATAAAAAAAAAAATAATGTCCCCAGCAGGTATTACTACAACTCCTTCAAGATGGTGTCCAACTCCAGAACAAGTCATGATTTTGGAGGAAATTTACAGAAATGGGCTTAAAACACCCAATGCCACTCAAATTCAGCATATTACTTCCCATCTTTCTTTGTATGGTAAAATTGAAGGCAAAAATGTGTTTTATTGGTTTCAAAATCACAAGGCTAGAGATCGCCAGAAGTTAAGAAGGAAGCTTTATAAACAGCTTCAACAACATCATTTTTTTATGAAACGTCACCGTTTTGATGACCATAATCACTTCTTCCAGTACTTCCTTCCCCAGCACCACCAGCTTGTACCGCAACTACTCCCGCTTCCATCTCCGGCCTCTTCTCATCAGAGGGAGGGTGAAGAGGAGCCGGCGACGGAGGTGGAGGGTGGTGGGAGGACGTGGTTGGGCGACGATGAGGGGACGACGGTGGCGGAGGAAGATGGAGAGACGACATGTCGTACTGGGACTTTGAGGACGTTGGAGCTGTTTCCAGTGAGAGCGAGTTGGGTAGAGGAGGAAGAAGGCACGAGTGGAAACGGTGGATGGGGGAATTAA

Coding sequence (CDS)

ATGTCCCCAGCAGGTATTACTACAACTCCTTCAAGATGGTGTCCAACTCCAGAACAAGTCATGATTTTGGAGGAAATTTACAGAAATGGGCTTAAAACACCCAATGCCACTCAAATTCAGCATATTACTTCCCATCTTTCTTTGTATGGTAAAATTGAAGGCAAAAATGTGTTTTATTGGTTTCAAAATCACAAGGCTAGAGATCGCCAGAAGTTAAGAAGGAAGCTTTATAAACAGCTTCAACAACATCATTTTTTTATGAAACGTCACCGTTTTGATGACCATAATCACTTCTTCCAGTACTTCCTTCCCCAGCACCACCAGCTTGTACCGCAACTACTCCCGCTTCCATCTCCGGCCTCTTCTCATCAGAGGGAGGGTGAAGAGGAGCCGGCGACGGAGGTGGAGGGTGGTGGGAGGACGTGGTTGGGCGACGATGAGGGGACGACGGTGGCGGAGGAAGATGGAGAGACGACATGTCGTACTGGGACTTTGAGGACGTTGGAGCTGTTTCCAGTGAGAGCGAGTTGGGTAGAGGAGGAAGAAGGCACGAGTGGAAACGGTGGATGGGGGAATTAA

Protein sequence

MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFDDHNHFFQYFLPQHHQLVPQLLPLPSPASSHQREGEEEPATEVEGGGRTWLGDDEGTTVAEEDGETTCRTGTLRTLELFPVRASWVEEEEGTSGNGGWGN

Homology

[Close]

BLAST of Lsi10G013250 vs. ExPASy Swiss-Prot
Match: Q5W7C3 (Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX2 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.2e-28
Identity = 68/119 (57.14%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 4   AGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQN 63
           A    + +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQN
Sbjct: 19  AAAVGSTTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQN 78

Query: 64  HKARDRQKLRRKLYKQLQQHHFFMKRHRFDDHNHFFQYFLPQHHQLVPQLLPLPSPASS 123
           HKARDRQKLRR+L      HH     H +  H       +P      PQLLP   P+SS
Sbjct: 79  HKARDRQKLRRRL---CISHHLLSCAHYYHHHLAAAAAVVPP-----PQLLPPLHPSSS 129

[Close]

BLAST of Lsi10G013250 vs. ExPASy Swiss-Prot
Match: Q9SIB4 (WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-27
Identity = 68/127 (53.54%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 1   MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 60
           MSP   T    RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+ YG+IEGKNVFYW
Sbjct: 1   MSPVAST----RWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYW 60

Query: 61  FQNHKARDRQKLRRKLYKQL--QQHHFFMK------------------RHRFDDHNHFFQ 108
           FQNHKARDRQKLR+KL KQL  QQH   ++                  ++  D HN +  
Sbjct: 61  FQNHKARDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMISQPVNKNIIDHHNPYHH 120

[Close]

BLAST of Lsi10G013250 vs. ExPASy Swiss-Prot
Match: A2XZR3 (Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica OX=39946 GN=WOX2 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.3e-27
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 4   AGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQN 63
           A    + +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQN
Sbjct: 19  AAAVGSTTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQN 78

Query: 64  HKARDRQKLRRKLYKQLQQHHFFMKRHRFDDH 96
           HKARDRQKLRR+L      HH     H +  H
Sbjct: 79  HKARDRQKLRRRL---CISHHLLSCAHYYHHH 107

[Close]

BLAST of Lsi10G013250 vs. ExPASy Swiss-Prot
Match: Q70UV1 (WUSCHEL-related homeobox 3A OS=Zea mays OX=4577 GN=WOX3A PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.5e-26
Identity = 53/77 (68.83%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 8  TTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKAR 67
          T  +RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR
Sbjct: 4  TPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKAR 63

Query: 68 DRQKLRRKLYKQLQQHH 85
          +RQ+LRR+L  + QQ +
Sbjct: 64 ERQRLRRRLCARHQQQY 80

[Close]

BLAST of Lsi10G013250 vs. ExPASy Swiss-Prot
Match: Q6S3I3 (WUSCHEL-related homeobox 3B OS=Zea mays OX=4577 GN=WOX3B PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.5e-26
Identity = 53/77 (68.83%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 8  TTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKAR 67
          T  +RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR
Sbjct: 4  TPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKAR 63

Query: 68 DRQKLRRKLYKQLQQHH 85
          +RQ+LRR+L  + QQ +
Sbjct: 64 ERQRLRRRLCARHQQQY 80

[Close]

BLAST of Lsi10G013250 vs. ExPASy TrEMBL
Match: A0A0A0KHT6 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G301060 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.7e-84
Identity = 167/198 (84.34%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 60
           MSP+ I  TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYW
Sbjct: 1   MSPSSI--TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYW 60

Query: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFD----DHNHFFQYFLPQHHQLVPQLLP- 120
           FQNHKARDRQKLRRKLYKQLQQHHFFMKR RFD    DH+HFFQYFLP H   VPQLLP 
Sbjct: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHQHDHHHFFQYFLPHH---VPQLLPQ 120

Query: 121 LPSPASSHQREGEEEPATEVE-GGGRTWLGDDEGTTVAEEDGETTCRTGTLRTLELFPVR 180
           LPSP+S  +  GEEE ATEVE GGGR W+G DEGTTV EEDGETTC  GTLRTLELFPVR
Sbjct: 121 LPSPSSLQREVGEEEAATEVEGGGGRRWMGGDEGTTVEEEDGETTCGNGTLRTLELFPVR 180

Query: 181 ASWVEEEEGTSGNGGWGN 193
           ASWV+EEEGTSGNGGWGN
Sbjct: 181 ASWVKEEEGTSGNGGWGN 193

[Close]

BLAST of Lsi10G013250 vs. ExPASy TrEMBL
Match: A0A1S3CK69 (WUSCHEL-related homeobox 3 OS=Cucumis melo OX=3656 GN=LOC103501892 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.1e-83
Identity = 166/197 (84.26%), Postives = 173/197 (87.82%), Query Frame = 0


Query: 1   MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 60
           MSP+ I  TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYW
Sbjct: 1   MSPSSI--TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYW 60

Query: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFD---DHNHFFQYFLPQHHQLVPQLLP-L 120
           FQNHKARDRQKLRRKLYKQLQQHHFFMKR RFD   DH+HFFQYFLP H   VPQLLP L
Sbjct: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDDHDHHHFFQYFLPHH---VPQLLPQL 120

Query: 121 PSPASSHQREGEEEPATEVE-GGGRTWLGDDEGTTVAEEDGETTCRTGTLRTLELFPVRA 180
           PSP+S  +  GEEE ATEVE GGGR WLG D+GTTVAEEDGETTC  G+LRTLELFPVR 
Sbjct: 121 PSPSSLQRELGEEEAATEVEGGGGRRWLGGDDGTTVAEEDGETTCGNGSLRTLELFPVRG 180

Query: 181 SWVEEEEGTSGNGGWGN 193
           SWV+EEEGTSGNGGWGN
Sbjct: 181 SWVKEEEGTSGNGGWGN 192

[Close]

BLAST of Lsi10G013250 vs. ExPASy TrEMBL
Match: A0A6J1FXP0 (putative WUSCHEL-related homeobox 2 OS=Cucurbita moschata OX=3662 GN=LOC111448632 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.5e-72
Identity = 149/194 (76.80%), Postives = 155/194 (79.90%), Query Frame = 0


Query: 1   MSP--AGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVF 60
           MSP  A    TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVF
Sbjct: 1   MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVF 60

Query: 61  YWFQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFDDHNHFFQYFLPQHHQLVPQLLPLPS 120
           YWFQNHKARDRQKLRRKLYKQLQQHHFF+KR RFDDH HFF  FL  H + +P LLPLP 
Sbjct: 61  YWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDH-HFFHCFLQHHQRFLPPLLPLP- 120

Query: 121 PASSHQREGEEEPATEVEGGGRTWLGDDEGTTVAEEDGETTCRTGTLRTLELFPVRASWV 180
             +  Q EG E   TEVEGGG      D+G  V EED ETTC  GTLRTLELFPVRA WV
Sbjct: 121 --THFQGEGGEGRTTEVEGGG------DDGMAVGEEDAETTCGNGTLRTLELFPVRAGWV 180

Query: 181 EEEEGTSGNGGWGN 193
           +EEEG SGNGGWGN
Sbjct: 181 KEEEGGSGNGGWGN 184

[Close]

BLAST of Lsi10G013250 vs. ExPASy TrEMBL
Match: A0A067LAA9 (Homeobox domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_05620 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 77/124 (62.10%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 1   MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 60
           MSP+  T++ SRWCPTPEQ+MILEE+YRNG++TPNA+QIQ IT+HLSLYGKIEGKNVFYW
Sbjct: 1   MSPSSTTSSSSRWCPTPEQLMILEELYRNGIRTPNASQIQRITAHLSLYGKIEGKNVFYW 60

Query: 61  FQNHKARDRQKLRRKLYKQLQ--QHHFFMKRHRFDDHNHFFQYFLPQHHQLVPQLLPLPS 120
           FQNHKARDRQKLRRKL KQLQ  Q   F   H    H +   Y    HH L+      P 
Sbjct: 61  FQNHKARDRQKLRRKLIKQLQQPQQQLFYPYHDHQLHQNMSNYHHHHHHHLLGSFFDSPP 120

Query: 121 PASS 123
           P ++
Sbjct: 121 PTAT 124

[Close]

BLAST of Lsi10G013250 vs. ExPASy TrEMBL
Match: A0A7J7DE76 (WUSCHEL-related homeobox 3 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G00237 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-33
Identity = 100/211 (47.39%), Postives = 117/211 (55.45%), Query Frame = 0


Query: 1   MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 60
           MSPAG     SRWCPTPEQ+MILEE+YR G++TPNA+QIQHIT+ LS YGKIEGKNVFYW
Sbjct: 1   MSPAG----SSRWCPTPEQLMILEELYRTGIRTPNASQIQHITAQLSFYGKIEGKNVFYW 60

Query: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFDDHNHFFQYFLPQHHQLVPQLLPLPSPA 120
           FQNHKARDRQKLRRK+ KQLQQ   +   H+    NH   YF P       QL    SP+
Sbjct: 61  FQNHKARDRQKLRRKINKQLQQQQLYNHHHQL-QQNH-LHYFEPPAACAFHQLSQHNSPS 120

Query: 121 SSHQREGEEEPATEVEGGGRTW-LGDDEGTTVAEE------------------------- 180
                 G E+ A        TW LG  E    AE+                         
Sbjct: 121 FLPHEGGLEDAAGASRATNYTWKLGIPETRETAEKSMMMYEHDWMMLMNVSPLPIQCSTT 180

Query: 181 DGETTCRTGTLRTLELFPVRASWVEEEEGTS 186
           +  T   T  L+TLELFPV A+ ++EE   S
Sbjct: 181 NTTTPTTTRPLKTLELFPVTATCLKEESDKS 205

[Close]

BLAST of Lsi10G013250 vs. NCBI nr
Match: XP_038902731.1 (WUSCHEL-related homeobox 3-like [Benincasa hispida])

HSP 1 Score: 334.7 bits (857), Expect = 5.2e-88
Identity = 168/192 (87.50%), Postives = 173/192 (90.10%), Query Frame = 0


Query: 1   MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 60
           MSP+GI  TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYW
Sbjct: 1   MSPSGI--TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYW 60

Query: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFDDHNHFFQYFLPQHHQLVPQLLPLPSPA 120
           FQNHKARDRQKLRRKLYKQLQQHHF MKRHRFD+H  FF YFLPQH   VPQLLP PSP 
Sbjct: 61  FQNHKARDRQKLRRKLYKQLQQHHFLMKRHRFDEHTQFFHYFLPQH---VPQLLPFPSP- 120

Query: 121 SSHQREGEEEPATEVEGGGRTWLGDDEGTTVAEEDGETTCRTGTLRTLELFPVRASWVEE 180
            SHQ+EGEEEPATEVEGG  TW G DEGTTVAEEDGETTCR GTLRTLELFPVRASW++E
Sbjct: 121 -SHQKEGEEEPATEVEGGRTTWFGGDEGTTVAEEDGETTCRNGTLRTLELFPVRASWMKE 180

Query: 181 EEGTSGNGGWGN 193
           EEGTSGNGGW N
Sbjct: 181 EEGTSGNGGWMN 185

[Close]

BLAST of Lsi10G013250 vs. NCBI nr
Match: XP_004148244.1 (WUSCHEL-related homeobox 3 [Cucumis sativus] >KGN47336.1 hypothetical protein Csa_022936 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 7.7e-84
Identity = 167/198 (84.34%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 60
           MSP+ I  TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYW
Sbjct: 1   MSPSSI--TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYW 60

Query: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFD----DHNHFFQYFLPQHHQLVPQLLP- 120
           FQNHKARDRQKLRRKLYKQLQQHHFFMKR RFD    DH+HFFQYFLP H   VPQLLP 
Sbjct: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHQHDHHHFFQYFLPHH---VPQLLPQ 120

Query: 121 LPSPASSHQREGEEEPATEVE-GGGRTWLGDDEGTTVAEEDGETTCRTGTLRTLELFPVR 180
           LPSP+S  +  GEEE ATEVE GGGR W+G DEGTTV EEDGETTC  GTLRTLELFPVR
Sbjct: 121 LPSPSSLQREVGEEEAATEVEGGGGRRWMGGDEGTTVEEEDGETTCGNGTLRTLELFPVR 180

Query: 181 ASWVEEEEGTSGNGGWGN 193
           ASWV+EEEGTSGNGGWGN
Sbjct: 181 ASWVKEEEGTSGNGGWGN 193

[Close]

BLAST of Lsi10G013250 vs. NCBI nr
Match: XP_008463857.1 (PREDICTED: WUSCHEL-related homeobox 3 [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 2.2e-83
Identity = 166/197 (84.26%), Postives = 173/197 (87.82%), Query Frame = 0


Query: 1   MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 60
           MSP+ I  TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYW
Sbjct: 1   MSPSSI--TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYW 60

Query: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFD---DHNHFFQYFLPQHHQLVPQLLP-L 120
           FQNHKARDRQKLRRKLYKQLQQHHFFMKR RFD   DH+HFFQYFLP H   VPQLLP L
Sbjct: 61  FQNHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDDHDHHHFFQYFLPHH---VPQLLPQL 120

Query: 121 PSPASSHQREGEEEPATEVE-GGGRTWLGDDEGTTVAEEDGETTCRTGTLRTLELFPVRA 180
           PSP+S  +  GEEE ATEVE GGGR WLG D+GTTVAEEDGETTC  G+LRTLELFPVR 
Sbjct: 121 PSPSSLQRELGEEEAATEVEGGGGRRWLGGDDGTTVAEEDGETTCGNGSLRTLELFPVRG 180

Query: 181 SWVEEEEGTSGNGGWGN 193
           SWV+EEEGTSGNGGWGN
Sbjct: 181 SWVKEEEGTSGNGGWGN 192

[Close]

BLAST of Lsi10G013250 vs. NCBI nr
Match: XP_022944088.1 (putative WUSCHEL-related homeobox 2 [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 5.2e-72
Identity = 149/194 (76.80%), Postives = 155/194 (79.90%), Query Frame = 0


Query: 1   MSP--AGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVF 60
           MSP  A    TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVF
Sbjct: 1   MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVF 60

Query: 61  YWFQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFDDHNHFFQYFLPQHHQLVPQLLPLPS 120
           YWFQNHKARDRQKLRRKLYKQLQQHHFF+KR RFDDH HFF  FL  H + +P LLPLP 
Sbjct: 61  YWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDH-HFFHCFLQHHQRFLPPLLPLP- 120

Query: 121 PASSHQREGEEEPATEVEGGGRTWLGDDEGTTVAEEDGETTCRTGTLRTLELFPVRASWV 180
             +  Q EG E   TEVEGGG      D+G  V EED ETTC  GTLRTLELFPVRA WV
Sbjct: 121 --THFQGEGGEGRTTEVEGGG------DDGMAVGEEDAETTCGNGTLRTLELFPVRAGWV 180

Query: 181 EEEEGTSGNGGWGN 193
           +EEEG SGNGGWGN
Sbjct: 181 KEEEGGSGNGGWGN 184

[Close]

BLAST of Lsi10G013250 vs. NCBI nr
Match: KAG6570743.1 (WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.0 bits (702), Expect = 4.9e-70
Identity = 152/199 (76.38%), Postives = 156/199 (78.39%), Query Frame = 0


Query: 1   MSP-AGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFY 60
           MSP A    TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFY
Sbjct: 1   MSPAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFY 60

Query: 61  WFQNHKARDRQKLRRKLYKQLQQHHFFMKRHRFDDHNHFFQYFLPQ-----HHQ-LVPQL 120
           WFQNHKARDRQKLRRKLYKQLQQHHFF+KR RFDDH HFF  FL Q     HHQ   P L
Sbjct: 61  WFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDH-HFFHCFLQQQQHHHHHQRFPPPL 120

Query: 121 LPLPSPASSHQREGEEEPATEVEGGGRTWLGDDEGTTVAEEDGETTCRTGTLRTLELFPV 180
           LPLP   +  Q EG     TEVEGGG      D+G  V EED ETTCR GTLRTLELFPV
Sbjct: 121 LPLP---THFQGEGR---TTEVEGGG------DDGMAVGEEDAETTCRNGTLRTLELFPV 180

Query: 181 RASWVEEEEGTSGNGGWGN 193
           RA WV+EEEG SGNGGWGN
Sbjct: 181 RAGWVKEEEGGSGNGGWGN 186

[Close]

BLAST of Lsi10G013250 vs. TAIR 10
Match: AT2G28610.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-28
Identity = 68/127 (53.54%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 1   MSPAGITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 60
           MSP   T    RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+ YG+IEGKNVFYW
Sbjct: 1   MSPVAST----RWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYW 60

Query: 61  FQNHKARDRQKLRRKLYKQL--QQHHFFMK------------------RHRFDDHNHFFQ 108
           FQNHKARDRQKLR+KL KQL  QQH   ++                  ++  D HN +  
Sbjct: 61  FQNHKARDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMISQPVNKNIIDHHNPYHH 120

[Close]

BLAST of Lsi10G013250 vs. TAIR 10
Match: AT3G18010.1 (WUSCHEL related homeobox 1 )

HSP 1 Score: 102.1 bits (253), Expect = 5.2e-22
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 11  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQ 70
           SRW PTP+Q+ +LEE+YR G +TP+A  IQ IT+ L  YGKIEGKNVFYWFQNHKAR+RQ
Sbjct: 75  SRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQ 134

Query: 71  KLRRKL 77
           K RR++
Sbjct: 135 KRRRQM 140

[Close]

BLAST of Lsi10G013250 vs. TAIR 10
Match: AT1G46480.1 (WUSCHEL related homeobox 4 )

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-21
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 3   PAGITTTP--SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYW 62
           P  + T P  +RW PT EQ+ ILE +Y+ G++TPNA QI+HIT  L  YGKIEGKNVFYW
Sbjct: 79  PHQLETHPGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYW 138

Query: 63  FQNHKARDRQKLRR 75
           FQNHKAR+RQK +R
Sbjct: 139 FQNHKARERQKQKR 152

[Close]

BLAST of Lsi10G013250 vs. TAIR 10
Match: AT5G59340.1 (WUSCHEL related homeobox 2 )

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 7  TTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKA 66
          T + SRW PT +Q+ +LE +Y+ G++TP+A QIQ IT  L  YG IEGKNVFYWFQNHKA
Sbjct: 9  TASSSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKA 68

Query: 67 RDRQKLRRK 76
          R RQK +++
Sbjct: 69 RQRQKQKQE 77

[Close]

BLAST of Lsi10G013250 vs. TAIR 10
Match: AT3G11260.1 (WUSCHEL related homeobox 5 )

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-19
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 5  GITTTPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNH 64
          G  T   RW PT EQ+ IL +++R GL+TP   QIQ I++ LS YGKIE KNVFYWFQNH
Sbjct: 17 GTGTKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNH 76

Query: 65 KARDRQKLRRKLYKQLQQHH 85
          KAR+RQK RRK+      HH
Sbjct: 77 KARERQK-RRKISIDFDHHH 95

The following BLAST results are available for this feature:

BLAST of Lsi10G013250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5W7C3	6.2e-28	57.14	Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q9SIB4	1.8e-27	53.54	WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1	[more]
A2XZR3	5.3e-27	64.13	Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica OX=39946 GN=WO...	[more]
Q70UV1	4.5e-26	68.83	WUSCHEL-related homeobox 3A OS=Zea mays OX=4577 GN=WOX3A PE=2 SV=1	[more]
Q6S3I3	4.5e-26	68.83	WUSCHEL-related homeobox 3B OS=Zea mays OX=4577 GN=WOX3B PE=2 SV=1	[more]

BLAST of Lsi10G013250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHT6	3.7e-84	84.34	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G301060 PE...	[more]
A0A1S3CK69	1.1e-83	84.26	WUSCHEL-related homeobox 3 OS=Cucumis melo OX=3656 GN=LOC103501892 PE=3 SV=1	[more]
A0A6J1FXP0	2.5e-72	76.80	putative WUSCHEL-related homeobox 2 OS=Cucurbita moschata OX=3662 GN=LOC11144863...	[more]
A0A067LAA9	1.8e-33	62.10	Homeobox domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_05620 PE...	[more]
A0A7J7DE76	8.7e-33	47.39	WUSCHEL-related homeobox 3 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G002...	[more]

BLAST of Lsi10G013250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902731.1	5.2e-88	87.50	WUSCHEL-related homeobox 3-like [Benincasa hispida]	[more]
XP_004148244.1	7.7e-84	84.34	WUSCHEL-related homeobox 3 [Cucumis sativus] >KGN47336.1 hypothetical protein Cs...	[more]
XP_008463857.1	2.2e-83	84.26	PREDICTED: WUSCHEL-related homeobox 3 [Cucumis melo]	[more]
XP_022944088.1	5.2e-72	76.80	putative WUSCHEL-related homeobox 2 [Cucurbita moschata]	[more]
KAG6570743.1	4.9e-70	76.38	WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi10G013250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28610.1	1.3e-28	53.54	Homeodomain-like superfamily protein	[more]
AT3G18010.1	5.2e-22	68.18	WUSCHEL related homeobox 1	[more]
AT1G46480.1	3.4e-21	63.51	WUSCHEL related homeobox 4	[more]
AT5G59340.1	1.4e-19	59.42	WUSCHEL related homeobox 2	[more]
AT3G11260.1	1.9e-19	58.75	WUSCHEL related homeobox 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 8..75 e-value: 9.7E-6 score: 35.1
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 11..70 e-value: 2.1E-17 score: 62.7
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 16..71 score: 9.604237
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 12..71 e-value: 1.06275E-4 score: 36.8377
None	No IPR available	GENE3D	1.10.10.60		coord: 10..81 e-value: 5.7E-9 score: 37.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..159
None	No IPR available	PANTHER	PTHR45940:SF24	WUSCHEL-RELATED HOMEOBOX 3	coord: 9..124
IPR044555	Protein WUSCHEL-like	PANTHER	PTHR45940	WUSCHEL-RELATED HOMEOBOX 1-RELATED	coord: 9..124
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G013250.1	Lsi10G013250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity