Lsi10G010930 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G010930
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr10: 15198727 .. 15201113 (-)
RNA-Seq ExpressionLsi10G010930
SyntenyLsi10G010930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTAGATTGAGCCACACTTTTAGTTAAGATTTACAATCACAATCTCATCAGTCTAACGACTTTAGTTGAAACTTTATGTACACAACTTTAAGTTCAAAGATAATTGTTACAGTCTAATTATGACATACATGAACATGATATTTAAAACACACATCACCTTCATGTGATAGTAATGGTAAATTTGTAAGTTGGAAAAGTAATAACCTGCAAAACGCAAAGAAAAAAAAAAGCTATGATGCCAAAGTCAGAATGAAAACTCTAGAATGGAGAATAAATTAGAGATTTAAGTTCCAGATTAAGTTCTTAGATCTCCCATCTAGTTAAAATTACTTCATATGGAGTAGGGATGACAACGGGACAGGGTCGAGGATGCACTTCCCATCCCCGCCCCAATCGGGGTCGGGGGATTGGGACCCCACGGAAAAAAATCTCCAACTGGGGACCCGATTTAAATCTCCGGTTTGACCCTCATATCCGATCAAACTGAGGATTCCCCGCCCCGTTCAAATCGGGGACCCGGCCTCGCGAAGAATTTTGACATCCCTAGTATGGAGCCATAATAATGTATCTATAGGGAGAATGAATTATATTTATGTTTCTTAGTCTTGTTTTGGCCTTTGATCTATTTCATCAAGTACATGTTTATCTATAACACTATCCTTTTTAAAATTTAACAATATGTGAGTATGTAATTTGAAACTATATGACATGATTAATGATATAATGTTTGACCAATTGACATCTAATGCCCCAATTAATTACAACAACATGCTAGAATCAAAATAAAAAATTCATAGAAATAATCCCATTGTTGTTGTTTTTTAAAAGAAAAAAAAATTATCAATTACGTTCTTGTAATTTAAAGAGAAAAAAAAAACATTTTCTTGATCAACTTCAACATGATTTTATTTGATGTTAAAAAAAGAAAATTATATAGTTGTTGTGGAAGCTCTACGAGCAAGAACAATCCAACAGAGCAATCGATACAACACAAAGAAAGCAATCATAATCCCAACATTCATCCACCGGAGATCCCCATCAAGCCCTCTGTTCTTCAGCACATCGTCGCCGGTGAGAACGCAGAGCCGCCGTCGCCCTTGTTCGATCCACGAATAACACTCCGATTTCACATCCCAGTACTCATTCACCAGCATCGCCTCCAAAGGGTATCGATACAGCGAGATGTAGTACATGAACATCCAAAATTTCGGAATGTTCTGTTTCGGAATGAAGTAGCCGGAGAAGAGGAAGAATCCGCCGAGGACGGTGCAGATTAAGGAGTTTCCGGTTATGAAATCCGGAGAAATGGCGCTCAGGAAGAGCACTAATGAACTAGCCATCATCACGATGAGCCAAACGACGAAGGTGAAGAAGGCGAAGGCCTCGATTGAAGGATTTAGCCCTACGATCCAATAGACTGGAGCGGCGAAGAGAATCGCGACGGCGAGCAAAAATGGGAGGAAGATGATGGCGTTGGCTATTAGGTAAGAGGAAATTTTGTAGACTCCTCTTGAGGCTTCTTTCATTAGAACCTTTCTTTCTTGCAGGAAAATGGGGAGGGATTCTACTGTGGAAGAGAGAAGGAAACTGAGACTGAAAGCAAAGAGGCCCAATCTTTCTGCAACTCCTTCTTCATCTCTTTTCACTCTCAGGTAAACACTTCCTAGCCCAATTCCTCCAACAATGGCTTGCAATGTTCTACCTAGAAATAGTTGCTTTGTTCTGTATAATAACTTCCAGAATCTTGAGCAAAGTAGCATAATCTCTAGGAAATGTGATGAGGAAAAGATTGATATCTGTTTACTGGTATTGTTGTCTTGTTGAACTCTTTCAATGGCTTCTTCTGGCCAAATTGGGGAGGAGAAGAGCTGGTTTCCTTCTTCTTCTTCAATCTGGGAAGTTGGGGGGTTTGAATCTTCTTTCAGTTTATCTATGATTTCCATAGCAAATTCTAGTGCATTTAATTGAATTGGGATTTGAATTCCCATTTCACCAATCTTCTTTTCCAGTGATTTAAGGCTTCCAAAATGAACTGTTAAACCATGGGATAGAATCAAGAAGTTGGAAATATATTGGAGGATTCTGTAGCCTGGTTGGTGGATTGAAAGAATAACAGTTCTTTGTTTACTTCTGGTCATTGAAGAGAGTAGCTCAACAACTTGAAGAGCAGAAGTGCTGTCCAAGCCTGAAGTTGGTTCATCAAGCAGAAGAATTGGTGGATCATGAATCATTTCTACTCCAATTGAAACCCTTTTCCTCTCTCCTCCAGATATCCCTCTTTTCTCTTCATCTCCTACAAAACTATCTGCCACATGAAACAAACCAAGCTCCTGCATTAATCTCTCTACTCTTTCTTCTTTCTCTTCTGAACCCAATTCTCTAA

mRNA sequence

ATGCATTGTTGTGGAAGCTCTACGAGCAAGAACAATCCAACAGAGCAATCGATACAACACAAAGAAAGCAATCATAATCCCAACATTCATCCACCGGAGATCCCCATCAAGCCCTCTGTTCTTCAGCACATCGTCGCCGGTGAGAACGCAGAGCCGCCGTCGCCCTTGTTCGATCCACGAATAACACTCCGATTTCACATCCCAGTACTCATTCACCAGCATCGCCTCCAAAGGGTATCGATACAGCGAGATGTAGTACATGAACATCCAAAATTTCGGAATGTTCTGTTTCGGAATGAACCGGAGAAGAGGAAGAATCCGCCGAGGACGGTGCAGATTAAGGAGTTTCCGGTTATGAAATCCGGAGAAATGGCGCTCAGGAAGAGCACTAATGAACTAGCCATCATCACGATGAGCCAAACGACGAAGACTGGAGCGGCGAAGAGAATCGCGACGGCGAGCAAAAATGGGAGGAAGATGATGGCGTTGGCTATTAGGAAAATGGGGAGGGATTCTACTGTGGAAGAGAGAAGGAAACTGAGACTGAAAGCAAAGAGGCCCAATCTTTCTGCAACTCCTTCTTCATCTCTTTTCACTCTCAGCCCAATTCCTCCAACAATGGCTTGCAATGTTCTACCTAGAAATAGTTGCTTTGTTCTGTATAATAACTTCCAGAATCTTGAGCAAAGTAGCATAATCTCTAGGAAATGTGATGAGGAAAAGATTGATATCTGTTTACTGAGAGTAGCTCAACAACTTGAAGAGCAGAAGTGCTGTCCAAGCCTGAAGTTGGTTCATCAAGCAGAAGAATTGGTGGATCATGAATCATTTCTACTCCAATTGAAACCCTTTTCCTCTCTCCTCCAGATATCCCTCTTTTCTCTTCATCTCCTACAAAACTATCTGCCACATGAAACAAACCAAGCTCCTGCATTAATCTCTCTACTCTTTCTTCTTTCTCTTCTGAACCCAATTCTCTAA

Coding sequence (CDS)

ATGCATTGTTGTGGAAGCTCTACGAGCAAGAACAATCCAACAGAGCAATCGATACAACACAAAGAAAGCAATCATAATCCCAACATTCATCCACCGGAGATCCCCATCAAGCCCTCTGTTCTTCAGCACATCGTCGCCGGTGAGAACGCAGAGCCGCCGTCGCCCTTGTTCGATCCACGAATAACACTCCGATTTCACATCCCAGTACTCATTCACCAGCATCGCCTCCAAAGGGTATCGATACAGCGAGATGTAGTACATGAACATCCAAAATTTCGGAATGTTCTGTTTCGGAATGAACCGGAGAAGAGGAAGAATCCGCCGAGGACGGTGCAGATTAAGGAGTTTCCGGTTATGAAATCCGGAGAAATGGCGCTCAGGAAGAGCACTAATGAACTAGCCATCATCACGATGAGCCAAACGACGAAGACTGGAGCGGCGAAGAGAATCGCGACGGCGAGCAAAAATGGGAGGAAGATGATGGCGTTGGCTATTAGGAAAATGGGGAGGGATTCTACTGTGGAAGAGAGAAGGAAACTGAGACTGAAAGCAAAGAGGCCCAATCTTTCTGCAACTCCTTCTTCATCTCTTTTCACTCTCAGCCCAATTCCTCCAACAATGGCTTGCAATGTTCTACCTAGAAATAGTTGCTTTGTTCTGTATAATAACTTCCAGAATCTTGAGCAAAGTAGCATAATCTCTAGGAAATGTGATGAGGAAAAGATTGATATCTGTTTACTGAGAGTAGCTCAACAACTTGAAGAGCAGAAGTGCTGTCCAAGCCTGAAGTTGGTTCATCAAGCAGAAGAATTGGTGGATCATGAATCATTTCTACTCCAATTGAAACCCTTTTCCTCTCTCCTCCAGATATCCCTCTTTTCTCTTCATCTCCTACAAAACTATCTGCCACATGAAACAAACCAAGCTCCTGCATTAATCTCTCTACTCTTTCTTCTTTCTCTTCTGAACCCAATTCTCTAA

Protein sequence

MHCCGSSTSKNNPTEQSIQHKESNHNPNIHPPEIPIKPSVLQHIVAGENAEPPSPLFDPRITLRFHIPVLIHQHRLQRVSIQRDVVHEHPKFRNVLFRNEPEKRKNPPRTVQIKEFPVMKSGEMALRKSTNELAIITMSQTTKTGAAKRIATASKNGRKMMALAIRKMGRDSTVEERRKLRLKAKRPNLSATPSSSLFTLSPIPPTMACNVLPRNSCFVLYNNFQNLEQSSIISRKCDEEKIDICLLRVAQQLEEQKCCPSLKLVHQAEELVDHESFLLQLKPFSSLLQISLFSLHLLQNYLPHETNQAPALISLLFLLSLLNPIL
Homology
[Close]
BLAST of Lsi10G010930 vs. ExPASy TrEMBL
Match: A0A6A5MPB2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00016190 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09
Identity = 56/119 (47.06%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 101 PEKRKNPPRTVQIKEFPVMKSGEMALRKSTNELAIITMSQTTK----------------- 160
           PEKRK  PRTVQI EFP MKSGE AL+KST ELA+ TMSQTTK                 
Sbjct: 16  PEKRKKAPRTVQISEFPEMKSGETALKKSTRELAMSTMSQTTKMKKVKAVREGLSPTIQY 75

Query: 161 TGAAKRIATASKNGRKMMALAI--RKMGRDSTVEERRKLRLKAK---RPNLSATPSSSL 198
           TG AKRI T +K GRK   LAI    +    T+++R  +  +A+   RP+L    S  L
Sbjct: 76  TGTAKRIDTTNKKGRKTKVLAIITTVLRFALTIDDRSSITWRAEVLSRPDLEEEASCPL 134

[Close]
BLAST of Lsi10G010930 vs. NCBI nr
Match: KAF1873070.1 (hypothetical protein Lal_00016190 [Lupinus albus])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-09
Identity = 56/119 (47.06%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 101 PEKRKNPPRTVQIKEFPVMKSGEMALRKSTNELAIITMSQTTK----------------- 160
           PEKRK  PRTVQI EFP MKSGE AL+KST ELA+ TMSQTTK                 
Sbjct: 16  PEKRKKAPRTVQISEFPEMKSGETALKKSTRELAMSTMSQTTKMKKVKAVREGLSPTIQY 75

Query: 161 TGAAKRIATASKNGRKMMALAI--RKMGRDSTVEERRKLRLKAK---RPNLSATPSSSL 198
           TG AKRI T +K GRK   LAI    +    T+++R  +  +A+   RP+L    S  L
Sbjct: 76  TGTAKRIDTTNKKGRKTKVLAIITTVLRFALTIDDRSSITWRAEVLSRPDLEEEASCPL 134

The following BLAST results are available for this feature:
BLAST of Lsi10G010930 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi10G010930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5MPB21.0e-0947.06Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00016190 PE=4 SV=1[more]
BLAST of Lsi10G010930 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF1873070.12.1e-0947.06hypothetical protein Lal_00016190 [Lupinus albus][more]
BLAST of Lsi10G010930 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G010930.1Lsi10G010930.1mRNA