Lsi10G009090 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G009090
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr10: 13562690 .. 13563242 (-)
RNA-Seq ExpressionLsi10G009090
SyntenyLsi10G009090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGGTTTTTTGGTTGGTCATTCTGTAAGTTCTATGCTCCATGTGGATCGTAATCTTTCCTATATTTCTGCCACTTGGAAGAGTTTTTCATAGTTTCCTTGGCTTGGAGTTTGATTTTCCTTCCCCCTTTCTGAAATCTCGTGTGTTCTATGAAATGAAATCCTTTCTCCTTGAAGGAAAAAAGGGTGTTTCTCTTACACCTAGCTTGGGAGGTTGTGCTACCCCCTGCGTGCTCACCCACATATTTTGTTTTCAGCTTTATTCATTTCTTTTATTTTTGATACAGTAACCAACCAATTATAGCATCAATTTTTACTATTTTCTGTCTGCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAG

mRNA sequence

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAG

Coding sequence (CDS)

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAG

Protein sequence

MVATSKFLFLAKDGEEHKLFNNKVKSIGGILDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADVSILISDYETC
Homology
[Close]
BLAST of Lsi10G009090 vs. ExPASy TrEMBL
Match: A0A6J1CT50 (uncharacterized protein LOC111014335 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014335 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSGLDVSRSK+SRHFQV D
Sbjct: 202 LSGISHFGNGDNGSTSGLDVSRSKISRHFQVVD 234

[Close]
BLAST of Lsi10G009090 vs. ExPASy TrEMBL
Match: A0A6J1CT92 (uncharacterized protein LOC111014335 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014335 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSGLDVSRSK+SRHFQV D
Sbjct: 202 LSGISHFGNGDNGSTSGLDVSRSKISRHFQVVD 234

[Close]
BLAST of Lsi10G009090 vs. ExPASy TrEMBL
Match: A0A6J1CUM7 (uncharacterized protein LOC111014335 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111014335 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSGLDVSRSK+SRHFQV D
Sbjct: 202 LSGISHFGNGDNGSTSGLDVSRSKISRHFQVVD 234

[Close]
BLAST of Lsi10G009090 vs. ExPASy TrEMBL
Match: A0A0A0KWY7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G266940 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.8e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 201 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 233

[Close]
BLAST of Lsi10G009090 vs. ExPASy TrEMBL
Match: A0A1S4DXR6 (uncharacterized protein LOC103491645 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491645 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.8e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 192 LSGISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 224

[Close]
BLAST of Lsi10G009090 vs. NCBI nr
Match: XP_038901807.1 (uncharacterized protein LOC120088513 isoform X1 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-06
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 25  KSIGGILDQ---TSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           K + G++ Q    SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 200 KCLSGVMYQFFYISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 241

[Close]
BLAST of Lsi10G009090 vs. NCBI nr
Match: XP_038901809.1 (uncharacterized protein LOC120088513 isoform X3 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-06
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 25  KSIGGILDQ---TSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           K + G++ Q    SHFGNGDNGSTSG DVSRSKLSRHFQVAD
Sbjct: 200 KCLSGVMYQFFYISHFGNGDNGSTSGPDVSRSKLSRHFQVAD 241

[Close]
BLAST of Lsi10G009090 vs. NCBI nr
Match: XP_022144764.1 (uncharacterized protein LOC111014335 isoform X2 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSGLDVSRSK+SRHFQV D
Sbjct: 202 LSGISHFGNGDNGSTSGLDVSRSKISRHFQVVD 234

[Close]
BLAST of Lsi10G009090 vs. NCBI nr
Match: XP_022144718.1 (uncharacterized protein LOC111014335 isoform X1 [Momordica charantia] >XP_022144724.1 uncharacterized protein LOC111014335 isoform X1 [Momordica charantia] >XP_022144732.1 uncharacterized protein LOC111014335 isoform X1 [Momordica charantia] >XP_022144739.1 uncharacterized protein LOC111014335 isoform X1 [Momordica charantia] >XP_022144748.1 uncharacterized protein LOC111014335 isoform X1 [Momordica charantia] >XP_022144755.1 uncharacterized protein LOC111014335 isoform X1 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSGLDVSRSK+SRHFQV D
Sbjct: 202 LSGISHFGNGDNGSTSGLDVSRSKISRHFQVVD 234

[Close]
BLAST of Lsi10G009090 vs. NCBI nr
Match: XP_022144772.1 (uncharacterized protein LOC111014335 isoform X3 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVAD 64
           L   SHFGNGDNGSTSGLDVSRSK+SRHFQV D
Sbjct: 202 LSGISHFGNGDNGSTSGLDVSRSKISRHFQVVD 234

The following BLAST results are available for this feature:
BLAST of Lsi10G009090 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi10G009090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CT506.0e-0684.85uncharacterized protein LOC111014335 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CT926.0e-0684.85uncharacterized protein LOC111014335 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CUM76.0e-0684.85uncharacterized protein LOC111014335 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A0A0KWY77.8e-0687.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G266940 PE=4 SV=1[more]
A0A1S4DXR67.8e-0687.88uncharacterized protein LOC103491645 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Lsi10G009090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038901807.17.2e-0673.81uncharacterized protein LOC120088513 isoform X1 [Benincasa hispida][more]
XP_038901809.17.2e-0673.81uncharacterized protein LOC120088513 isoform X3 [Benincasa hispida][more]
XP_022144764.11.2e-0584.85uncharacterized protein LOC111014335 isoform X2 [Momordica charantia][more]
XP_022144718.11.2e-0584.85uncharacterized protein LOC111014335 isoform X1 [Momordica charantia] >XP_022144... [more]
XP_022144772.11.2e-0584.85uncharacterized protein LOC111014335 isoform X3 [Momordica charantia][more]
BLAST of Lsi10G009090 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G009090.1Lsi10G009090.1mRNA