Lsi10G008690 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGGGCTTACTCTGAAAGCCCTCGAGCTTCCACCGCTTCCAAGCCCACTAAAAAGCTCTCCAATTTGGATACTTTCCGGATATTCCGATGCCTCGAGAAATGGAGCTCCCTTGATTCGGCTGAAGAGAATTGCCCTAGCTGACGAGACCCTCTCTCTGCCAAAATTGAAGCCACCCCAGCAGGCGACAGGTAAAATTTATAACGAAAAAGTTTTCCCTTTTCTCGTTAAATCAGTTTCCATGGACGACATTTTCGATTCTTCCCTCAATCTTGAAGAGACCCACTTGAAGGAAGGCTATACCGAGGGCTATAAAGATGGTCTAGTCGCTGGCAAAGAAGAGGCACAACAAGTAGGCCTTAAAGTTGGTTTCGAGGTCGGCGAGGAACTAGGATTCTACAGAGGGTGTGTGGACGTGTGGAATTCTGTAATTCGGATCGAACCAGAACGGTTTTCGATTCGGGTTCGGAAGACTGTGAAGCAAATGGAGGAGTTGCTTGAGAAATACCCACTTCAGGATCCTGAGAATGAGCAAGTTCAGGAGCTGATGGAAGGGTTGAGGCTCAAATTCAGAGCGATTTCTGCCACTTTGGGTGTCAAATTGGAGTATAATGGCTATCCTAAATCGACTTCAGATGGAAAGGATATTGAGTTTTAA ATGGGTGGGCTTACTCTGAAAGCCCTCGAGCTTCCACCGCTTCCAAGCCCACTAAAAAGCTCTCCAATTTGGATACTTTCCGGATATTCCGATGCCTCGAGAAATGGAGCTCCCTTGATTCGGCTGAAGAGAATTGCCCTAGCTGACGAGACCCTCTCTCTGCCAAAATTGAAGCCACCCCAGCAGGCGACAGGTAAAATTTATAACGAAAAAGTTTTCCCTTTTCTCGTTAAATCAGTTTCCATGGACGACATTTTCGATTCTTCCCTCAATCTTGAAGAGACCCACTTGAAGGAAGGCTATACCGAGGGCTATAAAGATGGTCTAGTCGCTGGCAAAGAAGAGGCACAACAAGTAGGCCTTAAAGTTGGTTTCGAGGTCGGCGAGGAACTAGGATTCTACAGAGGGTGTGTGGACGTGTGGAATTCTGTAATTCGGATCGAACCAGAACGGTTTTCGATTCGGGTTCGGAAGACTGTGAAGCAAATGGAGGAGTTGCTTGAGAAATACCCACTTCAGGATCCTGAGAATGAGCAAGTTCAGGAGCTGATGGAAGGGTTGAGGCTCAAATTCAGAGCGATTTCTGCCACTTTGGGTGTCAAATTGGAGTATAATGGCTATCCTAAATCGACTTCAGATGGAAAGGATATTGAGTTTTAA ATGGGTGGGCTTACTCTGAAAGCCCTCGAGCTTCCACCGCTTCCAAGCCCACTAAAAAGCTCTCCAATTTGGATACTTTCCGGATATTCCGATGCCTCGAGAAATGGAGCTCCCTTGATTCGGCTGAAGAGAATTGCCCTAGCTGACGAGACCCTCTCTCTGCCAAAATTGAAGCCACCCCAGCAGGCGACAGGTAAAATTTATAACGAAAAAGTTTTCCCTTTTCTCGTTAAATCAGTTTCCATGGACGACATTTTCGATTCTTCCCTCAATCTTGAAGAGACCCACTTGAAGGAAGGCTATACCGAGGGCTATAAAGATGGTCTAGTCGCTGGCAAAGAAGAGGCACAACAAGTAGGCCTTAAAGTTGGTTTCGAGGTCGGCGAGGAACTAGGATTCTACAGAGGGTGTGTGGACGTGTGGAATTCTGTAATTCGGATCGAACCAGAACGGTTTTCGATTCGGGTTCGGAAGACTGTGAAGCAAATGGAGGAGTTGCTTGAGAAATACCCACTTCAGGATCCTGAGAATGAGCAAGTTCAGGAGCTGATGGAAGGGTTGAGGCTCAAATTCAGAGCGATTTCTGCCACTTTGGGTGTCAAATTGGAGTATAATGGCTATCCTAAATCGACTTCAGATGGAAAGGATATTGAGTTTTAA MGGLTLKALELPPLPSPLKSSPIWILSGYSDASRNGAPLIRLKRIALADETLSLPKLKPPQQATGKIYNEKVFPFLVKSVSMDDIFDSSLNLEETHLKEGYTEGYKDGLVAGKEEAQQVGLKVGFEVGEELGFYRGCVDVWNSVIRIEPERFSIRVRKTVKQMEELLEKYPLQDPENEQVQELMEGLRLKFRAISATLGVKLEYNGYPKSTSDGKDIEF Homology
BLAST of Lsi10G008690 vs. ExPASy Swiss-Prot
Match: Q8CH62 (Protein LTO1 homolog OS=Mus musculus OX=10090 GN=Lto1 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.5e-12 Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 0
BLAST of Lsi10G008690 vs. ExPASy Swiss-Prot
Match: Q75JW3 (Protein LTO1 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0272178 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11 Identity = 41/132 (31.06%), Postives = 69/132 (52.27%), Query Frame = 0
BLAST of Lsi10G008690 vs. ExPASy Swiss-Prot
Match: Q8WV07 (Protein LTO1 homolog OS=Homo sapiens OX=9606 GN=LTO1 PE=1 SV=2) HSP 1 Score: 69.7 bits (169), Expect = 4.6e-11 Identity = 38/136 (27.94%), Postives = 72/136 (52.94%), Query Frame = 0
BLAST of Lsi10G008690 vs. ExPASy TrEMBL
Match: A0A0A0KE52 (Yae1_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G124070 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 2.3e-66 Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0
BLAST of Lsi10G008690 vs. ExPASy TrEMBL
Match: A0A5D3BVB4 (Formimidoyltransferase-cyclodeaminase isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00590 PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 2.2e-64 Identity = 123/138 (89.13%), Postives = 133/138 (96.38%), Query Frame = 0
BLAST of Lsi10G008690 vs. ExPASy TrEMBL
Match: A0A6J1I414 (oral cancer-overexpressed protein 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469699 PE=4 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 1.5e-60 Identity = 118/136 (86.76%), Postives = 130/136 (95.59%), Query Frame = 0
BLAST of Lsi10G008690 vs. ExPASy TrEMBL
Match: A0A6J1G6H8 (oral cancer-overexpressed protein 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451317 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 3.3e-60 Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of Lsi10G008690 vs. ExPASy TrEMBL
Match: A0A1S3BJ53 (formimidoyltransferase-cyclodeaminase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490466 PE=4 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 3.4e-57 Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = 0
BLAST of Lsi10G008690 vs. NCBI nr
Match: XP_038902357.1 (formimidoyltransferase-cyclodeaminase-like [Benincasa hispida]) HSP 1 Score: 267.3 bits (682), Expect = 1.2e-67 Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 0
BLAST of Lsi10G008690 vs. NCBI nr
Match: KAA0047887.1 (formimidoyltransferase-cyclodeaminase isoform X2 [Cucumis melo var. makuwa] >TYK02166.1 formimidoyltransferase-cyclodeaminase isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 255.4 bits (651), Expect = 4.5e-64 Identity = 123/138 (89.13%), Postives = 133/138 (96.38%), Query Frame = 0
BLAST of Lsi10G008690 vs. NCBI nr
Match: XP_022970845.1 (oral cancer-overexpressed protein 1 homolog [Cucurbita maxima]) HSP 1 Score: 242.7 bits (618), Expect = 3.0e-60 Identity = 118/136 (86.76%), Postives = 130/136 (95.59%), Query Frame = 0
BLAST of Lsi10G008690 vs. NCBI nr
Match: XP_022947461.1 (oral cancer-overexpressed protein 1 homolog [Cucurbita moschata]) HSP 1 Score: 241.5 bits (615), Expect = 6.8e-60 Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of Lsi10G008690 vs. NCBI nr
Match: XP_023532878.1 (oral cancer-overexpressed protein 1 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 240.0 bits (611), Expect = 2.0e-59 Identity = 117/136 (86.03%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of Lsi10G008690 vs. TAIR 10
Match: AT2G20830.2 (transferases;folic acid binding ) HSP 1 Score: 126.7 bits (317), Expect = 2.3e-29 Identity = 58/117 (49.57%), Postives = 85/117 (72.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|