Lsi10G007960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G007960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosome-binding factor PSRP1
Locationchr10: 10763286 .. 10765643 (-)
RNA-Seq ExpressionLsi10G007960
SyntenyLsi10G007960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAAAATTTGGAGGTATTTTAACTTCATCTTTGCTCTTGTTTCTCACGCAATGCAAATTCTTATTTCTTTTATGTGTTTCACAAAACCTCTACCTGTTTGATGTCCCATTCTCTATGCTATTCTAATCACCATATCCCTTCTCTCAAACACTACCCTTGTAATTGTCAACTTCTCCATTTCCACTAAATGTAATTTACAAACCCTAATTTTAATTTCTCCAAGTAAGTCTGCATGCTAATTTCTGCCTCATTTCTTCAAATATTTTCCATATCAACATTCGTGTCCCTTAGAAATTACCTACTAACACTTATAAACAAGCTTCCTTAGTGGTAGAAAGTCTGTTGCTGCAAAATGACAAGACCACCTACTAACTAGAAATTCTAATGTCTGTCTCTAGAAATTATCAGAGTTTCAGTTACCCAATTTATTGTATCCCCATGTTTCATATTTCAAACCTTGAGTGGATTTATTTTTCATTATGCAAAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTATTCTGTTGCTCCTTTATTTTAAAATTTTTTCTTATGAATTGAACCCTCATTCTTTTCCAACAACATTTGTGTTTATATAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTGTTCAAGAAGATGGTGGAGAAGTTATTGATGAGGTTATTCCTTCAACCTTTGGGTGTTTACTTTGAGTTCATTTCGCTGTAGATATTAATCATTTAAGGTGATATTAAGTTATAAAAACTCATGCATGCCATGCCTATTAATTTTTTTCTACATATCAAACTTACTGTGACTTCAGAATTACTAAACCACAACTTTTCTCACTTAGTTTTTGAAATCGTTGTTCTCTATGAAGAAAAAAAAACACATCAATTTCGTAGTTAATTTTCTTGCTCCTTTCCATTGATTGGCATTGGGAAGATTCTAGAGGCAGTACTCAGACTAGTTGAACCATGTGCAATAAGTTACTCCTTGCATAGGAGGCTAGAATGGAAAGAAGTGTATTCTCAATCTTGATTTCCCCTTATGATGAGCTATTTTCAACTGAATTCAGCCCAAAGTCGTAGCATTTTTATTTACATTATATAATTAATTAGTCCGTTCTTTTATTTCACAACATGATAGTTTAGATGAACATGAAAACATCGGAAGTTGGACCTTACAGCTGTAAGATAGAGGGCCTCCATAGTTTGTACAAGACTGTTATTTGTTATTTCTCACTGAGCTAACACTGTGTTCGAGTTATTTTATTGATCCTTTGCTCTTAATGAGTGTTTTGTGGTCCATTCGAATGTACTTGATCGTTCTCTGTTATAGCTTTTGATTCCCTAGCTTATTTTGTTGACATTCAATGTTGGTATCTCATTACTCATTTTTATCTTGATTTTAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGCGTTGATTTTATTATAATGATAATCTTGTTTTGTTGGGATTCTGTGCTGTTTATATCGTAGCTTATTGTCTTCATCCTTGGCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAATCTGTGACGGTTGAAGCAGCCAGAGAACCATCCTTGGCGGAATGA

mRNA sequence

ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTGTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAATCTGTGACGGTTGAAGCAGCCAGAGAACCATCCTTGGCGGAATGA

Coding sequence (CDS)

ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTGTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAATCTGTGACGGTTGAAGCAGCCAGAGAACCATCCTTGGCGGAATGA

Protein sequence

MVATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE
Homology
[Close]
BLAST of Lsi10G007960 vs. ExPASy Swiss-Prot
Match: P19954 (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 325.9 bits (834), Expect = 5.3e-88
Identity = 184/314 (58.60%), Postives = 234/314 (74.52%), Query Frame = 0 

Query: 18  SLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTI 77
           +++P L++S S+S + SS+ ++                    LSS  S F NSC     +
Sbjct: 10  NMNPNLTNSLSNSINLSSTPTN--------------------LSSLRSTFTNSCSLGLNV 69

Query: 78  ETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLV 137
              S     +    + MSWDGPLSSVKLI+QG+NLE+++ V+ HVE+KVGK+V KHSHLV
Sbjct: 70  AVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLV 129

Query: 138 REVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR 197
           REVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLR
Sbjct: 130 REVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLR 189

Query: 198 KIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEE--EEV------VQEDGGEVIDEIVRTK 257
           KIK+K SD GRHMKGF+RSKVR+P P+ +  EE  EEV      V  +  + I+E+VRTK
Sbjct: 190 KIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDFIEEVVRTK 249

Query: 258 YFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLE 317
           YFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GGYGLIIPK+ G+ EKLE
Sbjct: 250 YFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPKD-GKTEKLE 302

Query: 318 SVTVEAAREPSLAE 324
           S+ V+  ++PS AE
Sbjct: 310 SLPVQTDKQPSFAE 302

[Close]
BLAST of Lsi10G007960 vs. ExPASy Swiss-Prot
Match: P74518 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.8e-35
Identity = 86/202 (42.57%), Postives = 130/202 (64.36%), Query Frame = 0 

Query: 103 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 162
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 163 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVR 222
            EVT++     V+RA+E +E +YASIDLV+  I R+LRK KE+  D  +       S++ 
Sbjct: 61  AEVTVYA-NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERIQD--KQHGNVKTSEIV 120

Query: 223 EPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEE 282
           E  P+     EE ++ +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN++
Sbjct: 121 EDKPV-----EENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRNKD 180

Query: 283 TGEINILYKRKDGGYGLIIPKE 302
           T EIN++Y R  GGYG+I P +
Sbjct: 181 TDEINVIYIRNHGGYGVIQPHQ 189

[Close]
BLAST of Lsi10G007960 vs. ExPASy Swiss-Prot
Match: P47908 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-31
Identity = 80/198 (40.40%), Postives = 123/198 (62.12%), Query Frame = 0 

Query: 103 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 162
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 163 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA 222
           T++     V+RA+E +E +YASIDLVS  I R+LRK KEK+  +  H+    + K  E  
Sbjct: 61  TVYA-NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHV----QEKTSEVL 120

Query: 223 PIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGE 282
           P   +   + ++ +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T  
Sbjct: 121 P--EDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTNA 180

Query: 283 INILYKRKDGGYGLIIPK 301
           IN++Y R  GGYG+I P+
Sbjct: 181 INVIYIRNHGGYGVIQPR 189

[Close]
BLAST of Lsi10G007960 vs. ExPASy Swiss-Prot
Match: Q9RVE7 (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=hpf PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.7e-20
Identity = 65/194 (33.51%), Postives = 113/194 (58.25%), Query Frame = 0 

Query: 107 VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 166
           + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L  
Sbjct: 6   LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 65

Query: 167 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSK---VREPAP 226
              G++RAEE    +YA+ID  S +++R+LRK K       R+MK     +   +  PA 
Sbjct: 66  VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMKQRQEGRPEPLPGPAE 125

Query: 227 IVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEI 286
             V  +      +D  E   EIVR K F++ P++ E+A+ Q++ + HDFY F++ + G+ 
Sbjct: 126 AEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-GQT 185

Query: 287 NILYKRKDGGYGLI 298
            ++Y+R+DG YGLI
Sbjct: 186 GVVYRRRDGHYGLI 188

[Close]
BLAST of Lsi10G007960 vs. ExPASy Swiss-Prot
Match: P47995 (Ribosome hibernation promotion factor OS=Staphylococcus carnosus (strain TM300) OX=396513 GN=hpf PE=3 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 4.7e-20
Identity = 66/200 (33.00%), Postives = 112/200 (56.00%), Query Frame = 0 

Query: 103 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 162
           ++  + G NL +T+A++ ++E+KVGK ++++   V  V+  + V+           + EV
Sbjct: 2   IRFEIHGDNLTITDAIRNYIEDKVGK-LERYFTNVPNVNAHVKVK----TYANSSTKIEV 61

Query: 163 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA 222
           T+       +RAEE  + +YA IDL+++ ++R++RK K + + + R      +    EP 
Sbjct: 62  TI-PLNDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRKKR------KESEHEPF 121

Query: 223 PIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGE 282
           P   E   E  V  D  + I EI+R+K F + P+  EEA+ Q+  + HDF+ F + ET  
Sbjct: 122 PATPETPPETAVDHDKDDEI-EIIRSKQFSLKPMDSEEAVLQMDLLGHDFFIFNDRETDG 181

Query: 283 INILYKRKDGGYGLIIPKEN 303
            +I+Y+RKDG YGLI   EN
Sbjct: 182 TSIVYRRKDGKYGLIETVEN 188

[Close]
BLAST of Lsi10G007960 vs. ExPASy TrEMBL
Match: A0A5D3BQR1 (Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00050 PE=3 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.6e-148
Identity = 288/322 (89.44%), Postives = 297/322 (92.24%), Query Frame = 0 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLPPP------------HPSSSTVSYFPAPFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 301
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 300

Query: 302 NGRAEKLESVTVEAAREPSLAE 324
           NG AEKLE VTVEAAREPSLAE
Sbjct: 301 NGTAEKLEPVTVEAAREPSLAE 310

[Close]
BLAST of Lsi10G007960 vs. ExPASy TrEMBL
Match: A0A1S3CCT7 (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.6e-148
Identity = 288/322 (89.44%), Postives = 297/322 (92.24%), Query Frame = 0 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLPPP------------HPSSSTVSYFPAPFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 301
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 300

Query: 302 NGRAEKLESVTVEAAREPSLAE 324
           NG AEKLE VTVEAAREPSLAE
Sbjct: 301 NGTAEKLEPVTVEAAREPSLAE 310

[Close]
BLAST of Lsi10G007960 vs. ExPASy TrEMBL
Match: A0A6J1E3S3 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430564 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 2.2e-137
Identity = 275/327 (84.10%), Postives = 289/327 (88.38%), Query Frame = 0 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKV 61
           +A LTSSMQ N+LS HSL+P          SSSSSSSST+S FP+SFSL    + + LK 
Sbjct: 1   MAALTSSMQTNLLSAHSLTP----------SSSSSSSSTVSTFPTSFSLPTSTNSAVLKT 60

Query: 62  QALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTE 121
            ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSWDGPLSSVKLIVQGKNLELTE
Sbjct: 61  HALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTE 120

Query: 122 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 181
           AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE
Sbjct: 121 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 180

Query: 182 DAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQE 241
           DAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDRSK+REPAPIVVEDEEEEV QE
Sbjct: 181 DAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQE 240

Query: 242 DGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL 301
           DGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL
Sbjct: 241 DGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL 300

Query: 302 IIPKENGRAEKLESVTVEAAREPSLAE 324
           IIPKE+G AEK+E+VTVE ARE SLAE
Sbjct: 301 IIPKEDGNAEKIETVTVEVAREASLAE 317

[Close]
BLAST of Lsi10G007960 vs. ExPASy TrEMBL
Match: A0A6J1CJG5 (ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011561 PE=3 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.3e-134
Identity = 272/328 (82.93%), Postives = 282/328 (85.98%), Query Frame = 0 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKV 61
           +ATLTSSM  N+L                  S+ SSSST S FP+SFSL    + SALK+
Sbjct: 1   MATLTSSMHTNLL------------------SAPSSSSTFSTFPASFSLLTSTNSSALKI 60

Query: 62  QALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEA 121
             LSS+TS FFNSC  F TI+ A RNRH +NSF+IRMSWDGPLSSVKLIVQGKNLELTEA
Sbjct: 61  HPLSSHTSPFFNSCNCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEA 120

Query: 122 VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEED 181
           VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EED
Sbjct: 121 VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEED 180

Query: 182 AETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVED--EEEEVVQ 241
           AETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDR KVREPAPIVVED  EEEEV  
Sbjct: 181 AETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSL 240

Query: 242 EDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYG 301
           ED GEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYG
Sbjct: 241 EDSGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYG 300

Query: 302 LIIPKENGRAEKLESVTVEAAREPSLAE 324
           LIIPKENGRAEKLE VTVE AREPSLAE
Sbjct: 301 LIIPKENGRAEKLEPVTVEPAREPSLAE 310

[Close]
BLAST of Lsi10G007960 vs. ExPASy TrEMBL
Match: A0A6J1J523 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482691 PE=3 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.7e-134
Identity = 265/300 (88.33%), Postives = 276/300 (92.00%), Query Frame = 0 

Query: 29  SSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRN 88
           SSSSSSSSSSST+S FP+SFSL    + + LK+ ALSS+ SAFFNSC   FRTI  A R 
Sbjct: 24  SSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRK 83

Query: 89  RHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 148
           RH + SFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR
Sbjct: 84  RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 143

Query: 149 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKD 208
           LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKD
Sbjct: 144 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKD 203

Query: 209 SDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIE 268
           SD GRHMKGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIE
Sbjct: 204 SDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIE 263

Query: 269 QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE 324
           QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG AEK+E+VTVE ARE SLAE
Sbjct: 264 QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 323

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: XP_004147328.1 (ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hypothetical protein Csa_016934 [Cucumis sativus])

HSP 1 Score: 545.0 bits (1403), Expect = 4.2e-151
Identity = 290/322 (90.06%), Postives = 300/322 (93.17%), Query Frame = 0 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSLSPP              SSST+S+FP+SFSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLSPPF------------HSSSTVSYFPASFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDGPLSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 301
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 300

Query: 302 NGRAEKLESVTVEAAREPSLAE 324
           NG AEKLE VT+EA REPSLAE
Sbjct: 301 NGTAEKLEPVTIEATREPSLAE 310

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: XP_008460813.1 (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023.1 ribosome-binding factor PSRP1 [Cucumis melo var. makuwa])

HSP 1 Score: 535.4 bits (1378), Expect = 3.4e-148
Identity = 288/322 (89.44%), Postives = 297/322 (92.24%), Query Frame = 0 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLPPP------------HPSSSTVSYFPAPFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 301
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 300

Query: 302 NGRAEKLESVTVEAAREPSLAE 324
           NG AEKLE VTVEAAREPSLAE
Sbjct: 301 NGTAEKLEPVTVEAAREPSLAE 310

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: XP_038900446.1 (ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 525.4 bits (1352), Expect = 3.5e-145
Identity = 287/324 (88.58%), Postives = 298/324 (91.98%), Query Frame = 0 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQAL- 61
           +A LTSSM  ++L DHSL           SSSSSSSSSTISFFP+SFSLHFSALKV AL 
Sbjct: 1   MAALTSSMHTSLLPDHSL-----------SSSSSSSSSTISFFPASFSLHFSALKVHALS 60

Query: 62  -SSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVK 121
            SS  SAFFNSCKSFRT ETASRNRH SNSF++RMSWDGPLSSVKLIVQ KNLELTEAVK
Sbjct: 61  CSSTASAFFNSCKSFRTFETASRNRHASNSFNVRMSWDGPLSSVKLIVQAKNLELTEAVK 120

Query: 122 KHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE 181
           KHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE
Sbjct: 121 KHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE 180

Query: 182 TVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGG 241
           TVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDE+EEV +ED G
Sbjct: 181 TVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEDEEVFEED-G 240

Query: 242 EVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP 301
           EVIDEIVR KYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP
Sbjct: 241 EVIDEIVRRKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP 300

Query: 302 KENGRAEKLESVTVEAAREPSLAE 324
           KENGRAEKLESVT++AAREPSLAE
Sbjct: 301 KENGRAEKLESVTIDAAREPSLAE 312

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: KAG7014676.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 501.9 bits (1291), Expect = 4.1e-138
Identity = 278/327 (85.02%), Postives = 293/327 (89.60%), Query Frame = 0 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKV 61
           +A LTSSMQ N+LS HSL+P      SSSSSSSSSSSST+S FP+SFSL    + + LK 
Sbjct: 1   MAALTSSMQTNLLSAHSLTP------SSSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKT 60

Query: 62  QALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTE 121
            ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSWDGPLSSVKLIVQGKNLELTE
Sbjct: 61  HALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTE 120

Query: 122 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 181
           AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE
Sbjct: 121 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 180

Query: 182 DAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQE 241
           DAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDRSK+R+PAPIVVEDEEEEV QE
Sbjct: 181 DAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQE 240

Query: 242 DGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL 301
           DGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL
Sbjct: 241 DGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL 300

Query: 302 IIPKENGRAEKLESVTVEAAREPSLAE 324
           IIPKE+G AEK+E+VTVE ARE SLAE
Sbjct: 301 IIPKEDGNAEKIETVTVEVAREASLAE 321

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: KAG6576623.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 498.8 bits (1283), Expect = 3.5e-137
Identity = 277/327 (84.71%), Postives = 291/327 (88.99%), Query Frame = 0 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSF----SLHFSALKV 61
           +A LTSSMQ N+LS HSL+P      SSSSSSSSSSSST+S FP+SF    S + + LK 
Sbjct: 1   MAALTSSMQTNLLSTHSLTP------SSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKT 60

Query: 62  QALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTE 121
            ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSWDGPLSSVKLIVQGKNLELTE
Sbjct: 61  HALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTE 120

Query: 122 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 181
           AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE
Sbjct: 121 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 180

Query: 182 DAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQE 241
           DAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDRSK+REPAPIVVEDEEEEV QE
Sbjct: 181 DAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQE 240

Query: 242 DGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL 301
           DGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL
Sbjct: 241 DGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL 300

Query: 302 IIPKENGRAEKLESVTVEAAREPSLAE 324
           IIPKE+G AEK+E+VTV  ARE SLAE
Sbjct: 301 IIPKEDGNAEKIETVTVGVAREASLAE 321

[Close]
BLAST of Lsi10G007960 vs. TAIR 10
Match: AT5G24490.1 (30S ribosomal protein, putative )

HSP 1 Score: 352.1 bits (902), Expect = 4.9e-97
Identity = 182/248 (73.39%), Postives = 214/248 (86.29%), Query Frame = 0 

Query: 82  RNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVD 141
           R+ +  +S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 142 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE 201
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 202 KDSDRGRHMKGFDRSKVREPA--PIV--VEDEEEEVV--QEDGGEVIDEIVRTKYFDMPP 261
           KDSD GRHMKGF+R KVREP   P+V  VED  +  V  +E+  ++I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPP 240

Query: 262 LTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEA 321
           LTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIPK++G+AEK+E +  E 
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQ 300

Query: 322 AREPSLAE 324
             E S AE
Sbjct: 301 LNEHSFAE 308

The following BLAST results are available for this feature:
BLAST of Lsi10G007960 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P199545.3e-8858.60Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR... [more]
P745186.8e-3542.57Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka... [more]
P479081.6e-3140.40Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ... [more]
Q9RVE74.7e-2033.51Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13... [more]
P479954.7e-2033.00Ribosome hibernation promotion factor OS=Staphylococcus carnosus (strain TM300) ... [more]
BLAST of Lsi10G007960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BQR11.6e-14889.44Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3CCT71.6e-14889.44ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349... [more]
A0A6J1E3S32.2e-13784.10ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1CJG51.3e-13482.93ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1J5231.7e-13488.33ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
BLAST of Lsi10G007960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147328.14.2e-15190.06ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hyp... [more]
XP_008460813.13.4e-14889.44PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023... [more]
XP_038900446.13.5e-14588.58ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida][more]
KAG7014676.14.1e-13885.02Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su... [more]
KAG6576623.13.5e-13784.71Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su... [more]
BLAST of Lsi10G007960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G24490.14.9e-9773.3930S ribosomal protein, putative [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032528Sigma 54 modulation/S30EA ribosomal protein, C-terminalPFAMPF16321Ribosom_S30AE_Ccoord: 243..296
e-value: 4.7E-26
score: 90.2
IPR038416Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamilyGENE3D3.30.505.50coord: 255..307
e-value: 2.2E-21
score: 77.1
IPR036567Ribosome hibernation promotion factor-likeGENE3D3.30.160.100coord: 104..214
e-value: 1.1E-21
score: 79.1
IPR036567Ribosome hibernation promotion factor-likeSUPERFAMILY69754Ribosome binding protein Y (YfiA homologue)coord: 104..209
IPR003489Ribosome hibernation promoting factor/RaiAPFAMPF02482Ribosomal_S30AEcoord: 106..202
e-value: 1.6E-22
score: 80.0
IPR003489Ribosome hibernation promoting factor/RaiATIGRFAMTIGR00741TIGR00741coord: 104..206
e-value: 1.0E-18
score: 65.7
IPR003489Ribosome hibernation promoting factor/RaiACDDcd00552RaiAcoord: 104..202
e-value: 1.71255E-24
score: 93.3485
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..36
NoneNo IPR availablePANTHERPTHR33231:SF130S RIBOSOMAL PROTEINcoord: 88..303
NoneNo IPR availablePANTHERPTHR3323130S RIBOSOMAL PROTEINcoord: 88..303
IPR034694Ribosome hibernation promoting factor, long/plastidHAMAPMF_00839HPFcoord: 103..300
score: 20.448185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G007960.1Lsi10G007960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045900 negative regulation of translational elongation
biological_process GO:0044238 primary metabolic process
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0043024 ribosomal small subunit binding
molecular_function GO:0043022 ribosome binding