Lsi10G006770 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G006770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ubiquitin carboxyl-terminal hydrolase, putative isoform 1
Location	chr10: 9473939 .. 9475401 (+)
RNA-Seq Expression	Lsi10G006770
Synteny	Lsi10G006770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGCTTCCATGCAAACGCATCCTCCTCCTCCTCCTCCTCCTTCTCTGTTGTTTCTCAAACACGGCTATAGGTAGACTTTTCCATTTAACGACTTTTCTGTTTCTTTATTAACTTTATGTTTTAAGTTATGGTTAACCAACATGTTAAACTAATTGATTATGGTAAATCAAATCGGTTTTTGTTTATGTATTTCTTCTCTAGTTTTGTTTATGTATTCCTTTACTATTATCTGTCTTCGAGGTTTCAAAATATATATTGACATTTTAATGCAATTCTTGTTAACTTATGTAACGGTCATAAATAAGATGAGATCTTATTTACAATTTTCTCATGCATGATATCTAGAATTTTAAATTCTAACAAATAATATTTGCAAGTAAGCTAGATGCATATACTTTATTAATATTTGAGAAATTTTGGAAGATGTGTGACAAACATAGGTACATTCAAACATGACATATGTTTCTTGATGCTTGTTTTGCAAATTTAATGGGACTATGGAAGTATCATTTTATAAAACGGTATCTTTCTTCTTTTTTTTTTTAAAGAAAATGAAGTTTTTCTTAGAGTAAATTTACCTATTTTATAATCTACTTTCTAAAATCTTATTTCAAAAAGAAGGATTTCTATCCAGAAAATAAACCAAACAAAAAACCAGTTAAAATTAAACTTTAACGTTTTGTCTCCAACCCTATATGATTTTGACGGATTTCAAACAATTTCGTTGTTTGTTATTTAAAAGAAAGAGAATGATTTTTAAATATGAAGTGATTTCAAATCTTACTTTTATGTAAAAAAATCTGATTAAAATGGTCGGATTTGTAAGATTTCCTAGAATTTAGGGTAAACTAGTTAAGTTATTTAACCTTGTATAATGAAAAGCCTATTATCAGTAAACTTTCTATGGTTTCTTTTTCTTAAATAATCGATTGTCCTACAACCTTAAGTTAATGGGTGAAGACAATATTATATTATCTAATATATTTCTTTTTTCTGTTACCATTAAACTACAAAATTTTAAATACAATCCTCTCAAGTCTTTTTCAAATGAAGTAAGGAATTTAAAATTATTTTTTGGATTTTAAATCCATGATTTAAAATCATTTCTAGATCTTTCTTGAATCCAAAGGATGAGTAACTAAGGAAAACTATACTCAGAATTAAAAAATACAAAATACAAACTCATTCTATTGAAGTTTTTCTTCTCTTTGGAAATCAAAATTTTAATTATAAAGTTGGATTTAGAATATCACTGATGGGATTTTGCTATTGATTTGTGTTTTGCAGCAGCAAGAAGTTTGGGAGTGCCTCATCAGATTAAAAGTGATACTGATCATAATCAGAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

mRNA sequence

ATGGCTATGCTTCCATGCAAACGCATCCTCCTCCTCCTCCTCCTCCTTCTCTGTTGTTTCTCAAACACGGCTATAGCAGCAAGAAGTTTGGGAGTGCCTCATCAGATTAAAAGTGATACTGATCATAATCAGAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

Coding sequence (CDS)

ATGGCTATGCTTCCATGCAAACGCATCCTCCTCCTCCTCCTCCTCCTTCTCTGTTGTTTCTCAAACACGGCTATAGCAGCAAGAAGTTTGGGAGTGCCTCATCAGATTAAAAGTGATACTGATCATAATCAGAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

Protein sequence

MAMLPCKRILLLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKVINDDLKVHDEEHFSSTDDLGAMDYTPASKKPPIHN

Homology

[Close]

BLAST of Lsi10G006770 vs. ExPASy TrEMBL
Match: A0A5A7TWX6 (Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002040 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAMLPCKRIL---LLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKV--INDDL-KVH 60
          MAMLPCKRIL   LL+L+LL CFSNTAIAARS+GV  ++K++    +KV  INDD+ KVH
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVA-EMKNEISQREKVININDDVNKVH 60

Query: 61 ---DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
             DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of Lsi10G006770 vs. ExPASy TrEMBL
Match: A0A0A0LMV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1  MAMLPCKRIL---LLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKVIN---DDLKVH 60
          MAMLPCKRIL   +L+L+LLCCFSN AIAARS+GV  ++K+++  N+KVIN   D  KVH
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVA-EMKNES-QNEKVINMNDDAYKVH 60

Query: 61 --DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
            DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of Lsi10G006770 vs. ExPASy TrEMBL
Match: A0A6A1VC82 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024140 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-07
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 2  AMLPCKRILLLLLLLLCCFSNTAIAARSL-GVPHQIKSDTDHNQKVINDDLKVHDEEHFS 61
          A+LPCKR++L+ L++LC FSN A AARSL  V     S   H+Q    D     ++   +
Sbjct: 4  AVLPCKRLVLIALVMLCFFSNAARAARSLRAVASNEISQMSHDQ----DPFSPKEDRVLA 63

Query: 62 STDDLGAMDYTPASKKPPIHN 82
           +DDL  +DYTPA +KPPIHN
Sbjct: 64 DSDDLVTVDYTPARRKPPIHN 80

[Close]

BLAST of Lsi10G006770 vs. ExPASy TrEMBL
Match: A0A2N9HRC3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42165 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MAMLPCKRILLLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKVINDDLKVHDEEHFS 60
          MA +PCKR++L++L++LC FS TA   R L  P + +S  +H      D+L    EE   
Sbjct: 1  MAAVPCKRLILVVLIMLCLFSTTAKGGRDLREPSK-ESQMNH------DELFPVKEERVL 60

Query: 61 STDDLGAMDYTPASKKPPIHN 82
           +D+L A DYTPA +KPPIHN
Sbjct: 61 ESDELLAADYTPARRKPPIHN 74

[Close]

BLAST of Lsi10G006770 vs. ExPASy TrEMBL
Match: A0A6J5WGE6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS13997 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.5e-06
Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 1  MAMLPCKRILLLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKVINDDLKVHDEEHF- 60
          MA +P K +LL+  +LLC  S TA   RSLGV  +   D       ++D  K  +E+H  
Sbjct: 1  MAAIPFKHLLLVAFILLCFISITA-EGRSLGVVSKSSDDGHQKSHDLHDPFKQKEEDHEG 60

Query: 61 ---SSTDDLGAMDYTPASKKPPIHN 82
               ++DL AMDYTPASKKPPIHN
Sbjct: 61 LLPDESNDLLAMDYTPASKKPPIHN 84

[Close]

BLAST of Lsi10G006770 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 7  KRILLLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKVINDDLKVHDEEHFSSTDDLG 66
          KR+L+L+L+LLC FSN  IA RSLGVP QIK D DH  K  NDDL VH+EEHFSSTDDLG
Sbjct: 5  KRVLVLVLVLLCSFSNKVIATRSLGVP-QIKKD-DHKLKG-NDDLAVHEEEHFSSTDDLG 64

Query: 67 AMDYTPASKKPPIHN 82
          AMDYTPASKKPPIHN
Sbjct: 65 AMDYTPASKKPPIHN 76

[Close]

BLAST of Lsi10G006770 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-18
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAMLPCKRIL---LLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKV--INDDL-KVH 60
          MAMLPCKRIL   LL+L+LL CFSNTAIAARS+GV  ++K++    +KV  INDD+ KVH
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVA-EMKNEISQREKVININDDVNKVH 60

Query: 61 ---DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
             DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of Lsi10G006770 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1  MAMLPCKRIL---LLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKVIN---DDLKVH 60
          MAMLPCKRIL   +L+L+LLCCFSN AIAARS+GV  ++K+++  N+KVIN   D  KVH
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVA-EMKNES-QNEKVINMNDDAYKVH 60

Query: 61 --DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
            DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of Lsi10G006770 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 58/83 (69.88%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 3  MLPCKR---ILLLLLLLLCCFSNTAIAARSLGV-PHQIKSDTDHNQKVINDDLKVHDEEH 62
          M PCKR   +LL+LL+LL CFSNTAI ARSLGV   QIK D DH+ KV + DL V DEEH
Sbjct: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKD-DHSLKV-DGDLNVDDEEH 60

Query: 63 FSSTDDLGAMDYTPASKKPPIHN 82
          F ST DL AMDYT ASKKPPIHN
Sbjct: 61 FMSTVDLVAMDYTQASKKPPIHN 81

[Close]

BLAST of Lsi10G006770 vs. NCBI nr
Match: KAB1210353.1 (hypothetical protein CJ030_MR6G024140 [Morella rubra])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 2  AMLPCKRILLLLLLLLCCFSNTAIAARSL-GVPHQIKSDTDHNQKVINDDLKVHDEEHFS 61
          A+LPCKR++L+ L++LC FSN A AARSL  V     S   H+Q    D     ++   +
Sbjct: 4  AVLPCKRLVLIALVMLCFFSNAARAARSLRAVASNEISQMSHDQ----DPFSPKEDRVLA 63

Query: 62 STDDLGAMDYTPASKKPPIHN 82
           +DDL  +DYTPA +KPPIHN
Sbjct: 64 DSDDLVTVDYTPARRKPPIHN 80

The following BLAST results are available for this feature:

BLAST of Lsi10G006770 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G006770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWX6	1.5e-18	71.43	Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0LMV6	2.0e-18	71.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1	[more]
A0A6A1VC82	7.7e-07	46.91	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024140 PE=4 SV=1	[more]
A0A2N9HRC3	3.8e-06	45.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42165 PE=4 SV=1	[more]
A0A6J5WGE6	6.5e-06	45.88	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS13997 PE=4 S...	[more]

BLAST of Lsi10G006770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571377.1	1.1e-18	77.33	hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0045905.1	3.1e-18	71.43	Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684...	[more]
KGN62102.1	4.1e-18	71.11	hypothetical protein Csa_006036 [Cucumis sativus]	[more]
KAG6605281.1	2.1e-14	69.88	hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB1210353.1	1.6e-06	46.91	hypothetical protein CJ030_MR6G024140 [Morella rubra]	[more]

BLAST of Lsi10G006770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..81
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 1..81
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G006770.1	Lsi10G006770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity