Lsi10G005680 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATACTGATATACTTTATACTATATATTTTTGTCCCTTCCTTTCCCCATGTTGATTTGTAGTCTCTGATGGCATGCTTAGACATGTACAACTCCGACCACAAGTCCCTCCACCGCCGTGCTCCGGCCACCAGCCCTCGAATCTCCTTCTCCAGCGACTTCGTCGACATCCAACAGTCCCTCAAACACCAAGAACAACGCTCCACAGCTGCCCCACCCCCCGTCTCGTCCTCTTCCGATTTCGAATTCTCCGTCTCCAACTACTCTATGATGCCGGCCGACGAGCTCTTCTTCGAGGGCCGCCTTCTCCCTTATAAGGACTCCAACAGGGCGACTACTACTCTTAGAGACGAGCTTCTCGTCGAGGAAGAGGAAGGAGACGACAACGACGACGACAATGACGTTTTGCACCGCCCTACGTCTAGGGGTCGTTGGAAGGGCTTTCTTGGCTTGAAAAAGTCCCACAATAATGCTTCCAAGAAAGGGTGTAGAAATGACGGCTCTAGCGGCAGCCGTGACGTCGGCAGTGGCAAAAGGTCATTCGGTTGGTCGTCCTCTTCACCTAGTACTAGGGCAAACTCCTCCCACCAGGTAAAAAAAACAACCAACGAAAAATTATTCAACGTGACTGTCACTCCTTTTTAACTTTTGTTTGTTGTTAAATTATTGAAAGGGTACTTTTGGAATTTGTATTTTTTTCAGGTACAAAATGAAGGAGAATCAAGTTGCAAAGACGTGGAGATTGATTTCTAGAGAAAGGGAGAAGTTTAGTTAAAGTTTAAAAGGGAATGTAGAGCTTCTTGTTCAATCGGGTTTCAATTTATTTTTTTTTAATTTTTAAATTAACCATTTAGATTTTTGTGTTGTATGATCAATGCTAATGTTTTTCAGATTTGTA ATACTGATATACTTTATACTATATATTTTTGTCCCTTCCTTTCCCCATGTTGATTTGTAGTCTCTGATGGCATGCTTAGACATGTACAACTCCGACCACAAGTCCCTCCACCGCCGTGCTCCGGCCACCAGCCCTCGAATCTCCTTCTCCAGCGACTTCGTCGACATCCAACAGTCCCTCAAACACCAAGAACAACGCTCCACAGCTGCCCCACCCCCCGTCTCGTCCTCTTCCGATTTCGAATTCTCCGTCTCCAACTACTCTATGATGCCGGCCGACGAGCTCTTCTTCGAGGGCCGCCTTCTCCCTTATAAGGACTCCAACAGGGCGACTACTACTCTTAGAGACGAGCTTCTCGTCGAGGAAGAGGAAGGAGACGACAACGACGACGACAATGACGTTTTGCACCGCCCTACGTCTAGGGGTCGTTGGAAGGGCTTTCTTGGCTTGAAAAAGTCCCACAATAATGCTTCCAAGAAAGGGTGTAGAAATGACGGCTCTAGCGGCAGCCGTGACGTCGGCAGTGGCAAAAGGTCATTCGGTTGGTCGTCCTCTTCACCTAGTACTAGGGCAAACTCCTCCCACCAGGTACAAAATGAAGGAGAATCAAGTTGCAAAGACGTGGAGATTGATTTCTAGAGAAAGGGAGAAGTTTAGTTAAAGTTTAAAAGGGAATGTAGAGCTTCTTGTTCAATCGGGTTTCAATTTATTTTTTTTTAATTTTTAAATTAACCATTTAGATTTTTGTGTTGTATGATCAATGCTAATGTTTTTCAGATTTGTA ATGGCATGCTTAGACATGTACAACTCCGACCACAAGTCCCTCCACCGCCGTGCTCCGGCCACCAGCCCTCGAATCTCCTTCTCCAGCGACTTCGTCGACATCCAACAGTCCCTCAAACACCAAGAACAACGCTCCACAGCTGCCCCACCCCCCGTCTCGTCCTCTTCCGATTTCGAATTCTCCGTCTCCAACTACTCTATGATGCCGGCCGACGAGCTCTTCTTCGAGGGCCGCCTTCTCCCTTATAAGGACTCCAACAGGGCGACTACTACTCTTAGAGACGAGCTTCTCGTCGAGGAAGAGGAAGGAGACGACAACGACGACGACAATGACGTTTTGCACCGCCCTACGTCTAGGGGTCGTTGGAAGGGCTTTCTTGGCTTGAAAAAGTCCCACAATAATGCTTCCAAGAAAGGGTGTAGAAATGACGGCTCTAGCGGCAGCCGTGACGTCGGCAGTGGCAAAAGGTCATTCGGTTGGTCGTCCTCTTCACCTAGTACTAGGGCAAACTCCTCCCACCAGGTACAAAATGAAGGAGAATCAAGTTGCAAAGACGTGGAGATTGATTTCTAG MACLDMYNSDHKSLHRRAPATSPRISFSSDFVDIQQSLKHQEQRSTAAPPPVSSSSDFEFSVSNYSMMPADELFFEGRLLPYKDSNRATTTLRDELLVEEEEGDDNDDDNDVLHRPTSRGRWKGFLGLKKSHNNASKKGCRNDGSSGSRDVGSGKRSFGWSSSSPSTRANSSHQVQNEGESSCKDVEIDF Homology
BLAST of Lsi10G005680 vs. ExPASy TrEMBL
Match: A0A0A0LJI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285940 PE=4 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 7.0e-83 Identity = 169/191 (88.48%), Postives = 175/191 (91.62%), Query Frame = 0
BLAST of Lsi10G005680 vs. ExPASy TrEMBL
Match: A0A5A7TUK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00280 PE=4 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 4.5e-82 Identity = 169/192 (88.02%), Postives = 174/192 (90.62%), Query Frame = 0
BLAST of Lsi10G005680 vs. ExPASy TrEMBL
Match: A0A1S3C600 (uncharacterized protein LOC103497420 OS=Cucumis melo OX=3656 GN=LOC103497420 PE=4 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 4.5e-82 Identity = 169/192 (88.02%), Postives = 174/192 (90.62%), Query Frame = 0
BLAST of Lsi10G005680 vs. ExPASy TrEMBL
Match: A0A6J1KZD6 (uncharacterized protein LOC111499636 OS=Cucurbita maxima OX=3661 GN=LOC111499636 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 2.8e-60 Identity = 146/183 (79.78%), Postives = 155/183 (84.70%), Query Frame = 0
BLAST of Lsi10G005680 vs. ExPASy TrEMBL
Match: A0A6J1EMU8 (uncharacterized protein LOC111434969 OS=Cucurbita moschata OX=3662 GN=LOC111434969 PE=4 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 4.1e-59 Identity = 145/189 (76.72%), Postives = 152/189 (80.42%), Query Frame = 0
BLAST of Lsi10G005680 vs. NCBI nr
Match: XP_038902682.1 (uncharacterized protein LOC120089319 [Benincasa hispida]) HSP 1 Score: 330.5 bits (846), Expect = 9.6e-87 Identity = 173/191 (90.58%), Postives = 178/191 (93.19%), Query Frame = 0
BLAST of Lsi10G005680 vs. NCBI nr
Match: XP_004148034.1 (uncharacterized protein LOC101205218 [Cucumis sativus] >KGN62010.1 hypothetical protein Csa_006289 [Cucumis sativus]) HSP 1 Score: 316.6 bits (810), Expect = 1.4e-82 Identity = 169/191 (88.48%), Postives = 175/191 (91.62%), Query Frame = 0
BLAST of Lsi10G005680 vs. NCBI nr
Match: XP_008457833.1 (PREDICTED: uncharacterized protein LOC103497420 [Cucumis melo] >KAA0045816.1 uncharacterized protein E6C27_scaffold243G003410 [Cucumis melo var. makuwa] >TYJ99465.1 uncharacterized protein E5676_scaffold123G00280 [Cucumis melo var. makuwa]) HSP 1 Score: 313.9 bits (803), Expect = 9.3e-82 Identity = 169/192 (88.02%), Postives = 174/192 (90.62%), Query Frame = 0
BLAST of Lsi10G005680 vs. NCBI nr
Match: XP_023007016.1 (uncharacterized protein LOC111499636 [Cucurbita maxima]) HSP 1 Score: 241.5 bits (615), Expect = 5.9e-60 Identity = 146/183 (79.78%), Postives = 155/183 (84.70%), Query Frame = 0
BLAST of Lsi10G005680 vs. NCBI nr
Match: XP_023534650.1 (uncharacterized protein LOC111796161 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 239.2 bits (609), Expect = 2.9e-59 Identity = 145/183 (79.23%), Postives = 154/183 (84.15%), Query Frame = 0
BLAST of Lsi10G005680 vs. TAIR 10
Match: AT5G66800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 1.7e-25 Identity = 68/147 (46.26%), Postives = 92/147 (62.59%), Query Frame = 0
BLAST of Lsi10G005680 vs. TAIR 10
Match: AT3G50640.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66800.1); Has 67 Blast hits to 67 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 79.3 bits (194), Expect = 3.6e-15 Identity = 53/146 (36.30%), Postives = 85/146 (58.22%), Query Frame = 0
BLAST of Lsi10G005680 vs. TAIR 10
Match: AT4G34419.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19200.1). ) HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10 Identity = 51/122 (41.80%), Postives = 65/122 (53.28%), Query Frame = 0
BLAST of Lsi10G005680 vs. TAIR 10
Match: AT3G19200.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34419.1); Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.8 bits (133), Expect = 4.3e-08 Identity = 50/120 (41.67%), Postives = 61/120 (50.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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