Lsi10G003330 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G003330
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionmitochondrial import receptor subunit TOM6 homolog
Locationchr10: 5300500 .. 5303729 (+)
RNA-Seq ExpressionLsi10G003330
SyntenyLsi10G003330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCTTCCTTTCCAGCATCAGTATCTCCTTTAGCCTTCTTAAGATTGTTGATAGTGCCGACAAGGTCAAGTATGACTAGTTTATTATATTTGTGGGCGTCACTCTGTCCATTATTGATTTTTCTGTTCTTATTCGTACTTTAGCCGAGGTTAAACTCCTCATTATAAAGTCAACGAAACTATCATAGTAGTTGCCATCTGAATCCTCCTCACATTTTTCGTCTTTGGAACTGATATTGAAGGTGTGGATACGGAGGAACACAAGAGTCTATTTGTTTTCATGTGGGTCCTACTTTTTGACAGCTAGGATCGTGATTTTCATGATGAAAGTCGCCTGATATGGAATGATTTAGTTTTTTTTTTGTAATTTTTTACAACAAACAAGTCAGTGCGAATCAGAGTTGGGCTAGGGCCGCATTCTTTTTTAATTATTGATTTTCTACTATTCCTTAATAATGTTTTTATACAGGTTTTTTTTAGAAGAAGAAATAACAAACAATTCCAATGATCTCGAGGTCAAAAGACAAAGACAATTAGGGAAATCATCTGATAGTCGATATGCCAAAACTTGATTTTACCGCAAGTGTACGGATCAAGTTATAATAAAATGGTTAAGAGACTTAGTATCATCCTCTGGAGATCAAATGCCCATATTATACTTAGCTATTCTAAAGTTTTCTTGATTTTTATCTAAGGGTTGGACTTGTGATGATAATTTTTAATTGTTAACTAAAGAAACCAAAGTAAATGTATGGATGAAATTTAAGAGACAAAAGTGTTTAAGGGTGTTGATTTTCTTAATTACTTCATTAAGTAATGCAATGAATTTGATGGATTATCATGTTAATGATATACTTAAGTCTAGAAACTAAATTCCGGATTATTATCTTCCAGTAATAATTTTTTCTCATGCAAATCTAATTGATTACTAATCACTTGAAACCAAATTAAGAACGTGACATTAAGTTTGGTCATGATAAACTTTCACTAACAACTTGACTATTCACATGATAGGTTAGCAAATGATTCAATATTATAGATATGGTTAAACATGCAATCTTTGTAACTGAACATCTAACCTAACATTCATCTATGATCAATTGATGAGAGAAAGTACAATAACATTGAAAAGTAATCAAGAACACAACGTCCATAGAAAATACTAATGCATTAACTTAAATCCACAAACAAGTTCAGCAACATCCTAAAACTAAGTGTTTAACCACACATCGATGCTACAACCATAGTTTCATACATTCCAACAACCATAAATAATAAAGAAGAGTAAAGGGAATGAAGAAAAACTACTCTCGAAGCAATCTCCGCCGTTGAAGTTTGTCAATCTCGCCTTGATTTGCACCTTAGGATCTTGAAAGGCCTCCAAACGAACGTTTTAACTTTCCTTCTCTAAAACTAGGCTAAAATACTCTCTAGTGCTCTGGAAACATAGTCTAATGTGTTTAAATTTACTTGATGCCTTTAAGAATGTTTGAGAATTTAAATGAGAAGCTTTATTTTATTTTTAAGTTCAACCATTGTAGCTAGTGATTATACTATTGACCTTTAAGATAAGAATTGATATATATCTTATCCACAGAGTTATGCTTGAATCAACATTAATTCATTAACTTAAATTATGATAATTGATATATAATTTTATTAATATAACTTATGAAATTTAAGAGCAAAAATAATGATGAAAAATGTATCTAACTTATAAAACAAATAAATAAAGATTAAATTATAAGCGATTCCTTGAACTTTTAAGAATGTGTACTTAAAAGGATAGAGACGGACCTTATAAGGGTTCACACGTAATGGAAGGAGAATATTTATTTACACGAGAAATGAAGAGGGAACATAATGATTTTCTCTCTGTTGGTTAAATGGGGATGGATTCCCCGCCCCGTTCCTCATCATATTTTCTTTAAATAATGAAAATAATTTTTCGCAGAGAACCCAATTCTTACGAAAAAATCCATGTCTTAGATCCATGTAAAATTAAATGAAAATTTCTAAGAAATTTTAATGGCAAGCATGGATAAGATGCCATTTTTTTGCCTGCCCATGAACACCCCTATAAAAGGGCCATAAATCTTAAAATTATTTAAAATATTTTTTAACTTTTAATTTTATGTTTGAAAAATCCTTACACACTAAAATATGTGACATATTCAATTTGTTTAAATAAATAATTGGTATAATAGATTTAAGGTTAAATTTTAGATCCAATAGGACTCTAAACTTTTAATGTACAAAAACCATGATAATTGATCTAGGCTCACTATGGTCTCTAAACGTCTAATTTAGTAAACAATATATTTCTAAATTTTAGAAAATATCAAATAAATAAATAAAAAAAGGAGAGAAATTACTATGAAAAAAGAAAATATCAAACTATTTATAAATACAGAAAAATTTCACTGTATTTTTTCTATATTTGTAAATAGTTCGGCTCATTTTTTTATATTTGAAAACAACCTTAAAAAAAATCTATTTTACACTAAATTAAAATTTGAATACTTATTAATTACATAATAAAAAGTTTTATTTATTAATTACCTTTTATTTTTAAGAAATTTTCACCGATAGAAAAAATATCAAACTATTTACAGAAAATAGTAAAAAAAACACTGATAGACATTGATAGACTTCTATCAGCATCTATCAATGATAAACTTCTATTATTTCTATCATAGATTCTGATAGACTTTTATTAGTGTCTACCACAACTATGTAAAAATTTTACTATTTTGTGTAAATAGTTTCTCTTATTTTTCTATTTTTAATTTTTAATTTAATTTAATTTATTATTATTATTATTTTTTTATTTTTTTTTGAAGAAATTTAGATTTTAAAAATTAAGTACAAATAGACAATTTAATTTAACCATAGATTAAAAAAAAAAATGAAAAATGCGTGAAAATATGGCGGTGGGGCTGGGCCTTAAACCCACACCATAGCGACTCGAAAAATCCCAAATCTGAGTCTAGGGTTTTATCGTCGACCTCCGATCATTTCAATCTTCTGTTTGGCTTACAGCAAAGAAATCGAAACGAAAAATGTTTCCAGGAATGTTTATGCGTAAGCCTGACAAGGCTGCTGCTCTCAAGCAGCTCCGATCTCACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTCACCCCTTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

mRNA sequence

ATGTCCTCTTCCTTTCCAGCATCAGTATCTCCTTTAGCCTTCTTAAGATTGTTGATAGTGCCGACAAGGTCAACAAAGAAATCGAAACGAAAAATGTTTCCAGGAATGTTTATGCGTAAGCCTGACAAGGCTGCTGCTCTCAAGCAGCTCCGATCTCACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTCACCCCTTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Coding sequence (CDS)

ATGTCCTCTTCCTTTCCAGCATCAGTATCTCCTTTAGCCTTCTTAAGATTGTTGATAGTGCCGACAAGGTCAACAAAGAAATCGAAACGAAAAATGTTTCCAGGAATGTTTATGCGTAAGCCTGACAAGGCTGCTGCTCTCAAGCAGCTCCGATCTCACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTCACCCCTTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Protein sequence

MSSSFPASVSPLAFLRLLIVPTRSTKKSKRKMFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Homology
[Close]
BLAST of Lsi10G003330 vs. ExPASy Swiss-Prot
Match: Q9XIA7 (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM6 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.8e-18
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 32 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 86
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

[Close]
BLAST of Lsi10G003330 vs. ExPASy TrEMBL
Match: A0A6J1JEM5 (mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita maxima OX=3661 GN=LOC111484330 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 32 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 86
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of Lsi10G003330 vs. ExPASy TrEMBL
Match: A0A6J1FXI3 (mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita moschata OX=3662 GN=LOC111448504 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 32 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 86
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of Lsi10G003330 vs. ExPASy TrEMBL
Match: A0A5A7TQX5 (Mitochondrial import receptor subunit TOM6-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001260 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 32 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 86
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of Lsi10G003330 vs. ExPASy TrEMBL
Match: A0A0A0LP29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 32 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 86
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of Lsi10G003330 vs. ExPASy TrEMBL
Match: A0A1S3C9U8 (mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LOC103498428 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 32 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 86
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of Lsi10G003330 vs. NCBI nr
Match: XP_004154290.1 (mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_008459248.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis melo] >XP_011649217.1 mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_022943932.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022943933.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022948071.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022986654.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986655.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986656.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023007537.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023511843.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023511844.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023532551.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_038900853.1 mitochondrial import receptor subunit TOM6 homolog [Benincasa hispida] >KAA0045963.1 Mitochondrial import receptor subunit TOM6 -like protein [Cucumis melo var. makuwa] >KGN61761.1 hypothetical protein Csa_006573 [Cucumis sativus] >TYK13622.1 Mitochondrial import receptor subunit TOM6 -like protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 32 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 86
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]
BLAST of Lsi10G003330 vs. NCBI nr
Match: XP_022148517.1 (mitochondrial import receptor subunit TOM6 homolog [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 7.0e-21
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 32 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 86
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKL+F
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLEF 54

[Close]
BLAST of Lsi10G003330 vs. NCBI nr
Match: MBA0815198.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = 0 

Query: 19  IVPTRSTKKSKRK--MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSD 78
           + P  S  K++R+  MFPGMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSD
Sbjct: 75  LTPIYSAHKNQREATMFPGMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSD 134

Query: 79  EKEELKLDF 86
           EKEELK++F
Sbjct: 135 EKEELKIEF 143

[Close]
BLAST of Lsi10G003330 vs. NCBI nr
Match: OWM83775.1 (hypothetical protein CDL15_Pgr004206 [Punica granatum])

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-20
Identity = 54/68 (79.41%), Postives = 57/68 (83.82%), Query Frame = 0 

Query: 23  RSTKKSKRK-----MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDE 82
           +  KK KR+     MFPGMFMRKPDKA ALKQLR+HV MFGVWVAVIRVTPYVLHY SDE
Sbjct: 95  KKKKKKKRRPKQGIMFPGMFMRKPDKAEALKQLRTHVTMFGVWVAVIRVTPYVLHYFSDE 154

Query: 83  KEELKLDF 86
           KEELKLDF
Sbjct: 155 KEELKLDF 162

[Close]
BLAST of Lsi10G003330 vs. NCBI nr
Match: PKI47511.1 (hypothetical protein CRG98_032101 [Punica granatum])

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-20
Identity = 54/68 (79.41%), Postives = 57/68 (83.82%), Query Frame = 0 

Query: 23  RSTKKSKRK-----MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDE 82
           +  KK KR+     MFPGMFMRKPDKA ALKQLR+HV MFGVWVAVIRVTPYVLHY SDE
Sbjct: 61  KKKKKKKRRPKQGIMFPGMFMRKPDKAEALKQLRTHVTMFGVWVAVIRVTPYVLHYFSDE 120

Query: 83  KEELKLDF 86
           KEELKLDF
Sbjct: 121 KEELKLDF 128

[Close]
BLAST of Lsi10G003330 vs. TAIR 10
Match: AT1G49410.1 (translocase of the outer mitochondrial membrane 6 )

HSP 1 Score: 91.3 bits (225), Expect = 4.1e-19
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 32 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 86
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

The following BLAST results are available for this feature:
BLAST of Lsi10G003330 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XIA75.8e-1875.93Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=37... [more]
BLAST of Lsi10G003330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JEM51.2e-21100.00mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1FXI31.2e-21100.00mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita moschata OX=3662... [more]
A0A5A7TQX51.2e-21100.00Mitochondrial import receptor subunit TOM6-like protein OS=Cucumis melo var. mak... [more]
A0A0A0LP291.2e-21100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1[more]
A0A1S3C9U81.2e-21100.00mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LO... [more]
BLAST of Lsi10G003330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004154290.12.4e-21100.00mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_0084592... [more]
XP_022148517.17.0e-2198.15mitochondrial import receptor subunit TOM6 homolog [Momordica charantia][more]
MBA0815198.12.0e-2075.36hypothetical protein [Gossypium harknessii][more]
OWM83775.14.5e-2079.41hypothetical protein CDL15_Pgr004206 [Punica granatum][more]
PKI47511.14.5e-2079.41hypothetical protein CRG98_032101 [Punica granatum][more]
BLAST of Lsi10G003330 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G49410.14.1e-1975.93translocase of the outer mitochondrial membrane 6 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034554Mitochondrial import receptor subunit TOM6 homologue, plantsPANTHERPTHR35999MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM6 HOMOLOGcoord: 32..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G003330.1Lsi10G003330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005742 mitochondrial outer membrane translocase complex