Lsi10G002190 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G002190
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	S5 DRBM domain-containing protein
Location	chr10: 3545727 .. 3547611 (-)
RNA-Seq Expression	Lsi10G002190
Synteny	Lsi10G002190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACAAAAACCAAATTGAAAGAAAAAAAAAAATCCTCTCTCTTTCTTTCCCTACTCGTATTTCCTTTACCGTGAGTTCTTCCTTCCCATCTTTGCCGCAGCCGCACGCCCCATCGGCAGCTTCCTTCTCTCCTATCAGTATCTCCATTGCTTCTCAGCGCCAACCCTCCCCATCCATTGTTTCCTATCTTTCTCTCTCTCAGCTGCTGCCGTCGCCAGCCGCCGGCACGCCACCACACCAACAACGCAATGTCGTTTTTTTGAGAAAAGAATGTGATTGAATTGAATGGTTTATACATTTTATGCATTTGAAACCGTATTGATGTGTGATTGAAGTTTATACTCAAAGAAATGGTGAACAAGTCGCAAGCATTTTCTTGGTCGCGTCTCCTTCTCAATCAGGTCGTTCACCAAAACCCCACTAAAACCCCACTTCATATTTCCCGGAAAATCTCCTGTCTCCAACGCTTCCCGATTGAGGAAATTCCGAAGATTTCAGCGACGCGGTGTTACTCCACTGCTTCAGCTAGAGTTGTGCAAGATCTTCTCGCTGAGGTGGAGAAGGAGAAGCAGAGAGAAAGGGAGCAGAGGAGAAGGGCTGGTATTGATACCAAGGATATTGACGATGAAGATGGAGAGGATTATATGGGTGTTGGGCCATTGATAGAGAAGCTCGAGAAGCAAAATTTAAAGGACACTGGGGACTTGAACGCCTATGAAGAGCCCACTGATTCTGATAATGATGAAGACGATGAAAGGTTTAGTCCTGAATCCGTCAAAAAGAGGTTTGATGATTTTGAGAGGAAATTCAAAAGACACGAGGAATTGCTGAAGAACTTCACTGACACTGGTATGGCCATTTATGGAGAATGCCTCCATTTCCTACTTGTTTTTGTTTCTTAGCATCTGGATGGGTTTTGGTAATGCATATTGATTCAAATTTTGTAGAACTCCAAGTATAGCCAGTGGCATCCTCAAACTTTTGTTTTCCTCAAATTTTTGCTTTTTCGTTATTCGATACTTGTTGCAATAGACTAACGTGTGGGTTAAACTTTTAATAACGTTTTCTATGCATGCAACGAAATATGAACATACGTGTATTCAAATGTTGCAAGAGTCCAGCAGTTATTGATGCCATTTTTCGATCTTAACATTGGAAGATGCCTTCTCTTTCTCTCCATCGTAACCAAAAGAGAATTCATTTAACCATCTTTTTCGTTTATTTCAACATTTTGGACTTGTGTTAAAATCTGCCAACATCTCCAACATGTTTTTGACAGAAAACATCGATGATGCTTTCAAATGGATGAGTAAAATCGACAGGTTTGAGCAAAAACACTTCCGGCTTCGCCCTGAATATCGGGTAATTGGTGAATTAATGAACCGCTTGAAAGTCGCAGAGGGCAAGGAAAAGTTCATTCTTCAGCAAAAGTTAAATAGGGCTATGAGAATAGTGGAGTGGAAGGAAGCTTATGACCCAAATAATCCTGCCAACTATGGAGTTATTCAACACAGAAAAGTAGGTCCATCAGCTGATCCCATGGATCAATCAGGATTTGAAAAAGAGAAGCAAACCATACTAGGGGCTGATGATGATGATGAGGAAGAGTTTGATGACATGAAAGAAAGGGATAATATACTACTGGAGAAGCTTAATGCTATAGATAAGAAACTCGAAGAGAAGCTAGCAGAGCTGGATCATACCTTTGGAAAGAAAGGAAAGGTTCTAGAAGAAGAAATCCGAGATCTTGCAGAGGAGAGAAATTCTTTAACTGAGAAGAAGAGAACACCTCTTTATCGAAAAGTATGTTACTCCATCATCTTGTTTGTGCCTTCTACTTTGTCGTCTTCTGTCTTCTTGTGGCAGTTGATAGTTTCCAACTAA

mRNA sequence

TAAACAAAAACCAAATTGAAAGAAAAAAAAAAATCCTCTCTCTTTCTTTCCCTACTCGTATTTCCTTTACCGTGAGTTCTTCCTTCCCATCTTTGCCGCAGCCGCACGCCCCATCGGCAGCTTCCTTCTCTCCTATCAGTATCTCCATTGCTTCTCAGCGCCAACCCTCCCCATCCATTGTTTCCTATCTTTCTCTCTCTCAGCTGCTGCCGTCGCCAGCCGCCGGCACGCCACCACACCAACAACGCAATGTCGTTTTTTTGAGAAAAGAATGTGATTGAATTGAATGGTTTATACATTTTATGCATTTGAAACCGTATTGATGTGTGATTGAAGTTTATACTCAAAGAAATGGTGAACAAGTCGCAAGCATTTTCTTGGTCGCGTCTCCTTCTCAATCAGGTCGTTCACCAAAACCCCACTAAAACCCCACTTCATATTTCCCGGAAAATCTCCTGTCTCCAACGCTTCCCGATTGAGGAAATTCCGAAGATTTCAGCGACGCGGTGTTACTCCACTGCTTCAGCTAGAGTTGTGCAAGATCTTCTCGCTGAGGTGGAGAAGGAGAAGCAGAGAGAAAGGGAGCAGAGGAGAAGGGCTGGTATTGATACCAAGGATATTGACGATGAAGATGGAGAGGATTATATGGGTGTTGGGCCATTGATAGAGAAGCTCGAGAAGCAAAATTTAAAGGACACTGGGGACTTGAACGCCTATGAAGAGCCCACTGATTCTGATAATGATGAAGACGATGAAAGGTTTAGTCCTGAATCCGTCAAAAAGAGGTTTGATGATTTTGAGAGGAAATTCAAAAGACACGAGGAATTGCTGAAGAACTTCACTGACACTGAAAACATCGATGATGCTTTCAAATGGATGAGTAAAATCGACAGGTTTGAGCAAAAACACTTCCGGCTTCGCCCTGAATATCGGGTAATTGGTGAATTAATGAACCGCTTGAAAGTCGCAGAGGGCAAGGAAAAGTTCATTCTTCAGCAAAAGTTAAATAGGGCTATGAGAATAGTGGAGTGGAAGGAAGCTTATGACCCAAATAATCCTGCCAACTATGGAGTTATTCAACACAGAAAAGTAGGTCCATCAGCTGATCCCATGGATCAATCAGGATTTGAAAAAGAGAAGCAAACCATACTAGGGGCTGATGATGATGATGAGGAAGAGTTTGATGACATGAAAGAAAGGGATAATATACTACTGGAGAAGCTTAATGCTATAGATAAGAAACTCGAAGAGAAGCTAGCAGAGCTGGATCATACCTTTGGAAAGAAAGGAAAGGTTCTAGAAGAAGAAATCCGAGATCTTGCAGAGGAGAGAAATTCTTTAACTGAGAAGAAGAGAACACCTCTTTATCGAAAAGTATGTTACTCCATCATCTTGTTTGTGCCTTCTACTTTGTCGTCTTCTGTCTTCTTGTGGCAGTTGATAGTTTCCAACTAA

Coding sequence (CDS)

ATGGTGAACAAGTCGCAAGCATTTTCTTGGTCGCGTCTCCTTCTCAATCAGGTCGTTCACCAAAACCCCACTAAAACCCCACTTCATATTTCCCGGAAAATCTCCTGTCTCCAACGCTTCCCGATTGAGGAAATTCCGAAGATTTCAGCGACGCGGTGTTACTCCACTGCTTCAGCTAGAGTTGTGCAAGATCTTCTCGCTGAGGTGGAGAAGGAGAAGCAGAGAGAAAGGGAGCAGAGGAGAAGGGCTGGTATTGATACCAAGGATATTGACGATGAAGATGGAGAGGATTATATGGGTGTTGGGCCATTGATAGAGAAGCTCGAGAAGCAAAATTTAAAGGACACTGGGGACTTGAACGCCTATGAAGAGCCCACTGATTCTGATAATGATGAAGACGATGAAAGGTTTAGTCCTGAATCCGTCAAAAAGAGGTTTGATGATTTTGAGAGGAAATTCAAAAGACACGAGGAATTGCTGAAGAACTTCACTGACACTGAAAACATCGATGATGCTTTCAAATGGATGAGTAAAATCGACAGGTTTGAGCAAAAACACTTCCGGCTTCGCCCTGAATATCGGGTAATTGGTGAATTAATGAACCGCTTGAAAGTCGCAGAGGGCAAGGAAAAGTTCATTCTTCAGCAAAAGTTAAATAGGGCTATGAGAATAGTGGAGTGGAAGGAAGCTTATGACCCAAATAATCCTGCCAACTATGGAGTTATTCAACACAGAAAAGTAGGTCCATCAGCTGATCCCATGGATCAATCAGGATTTGAAAAAGAGAAGCAAACCATACTAGGGGCTGATGATGATGATGAGGAAGAGTTTGATGACATGAAAGAAAGGGATAATATACTACTGGAGAAGCTTAATGCTATAGATAAGAAACTCGAAGAGAAGCTAGCAGAGCTGGATCATACCTTTGGAAAGAAAGGAAAGGTTCTAGAAGAAGAAATCCGAGATCTTGCAGAGGAGAGAAATTCTTTAACTGAGAAGAAGAGAACACCTCTTTATCGAAAAGTATGTTACTCCATCATCTTGTTTGTGCCTTCTACTTTGTCGTCTTCTGTCTTCTTGTGGCAGTTGATAGTTTCCAACTAA

Protein sequence

MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASARVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKIDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYGVIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRKVCYSIILFVPSTLSSSVFLWQLIVSN

Homology

[Close]

BLAST of Lsi10G002190 vs. ExPASy TrEMBL
Match: A0A6J1FXC7 (DEAD-box ATP-dependent RNA helicase 42 OS=Cucurbita moschata OX=3662 GN=LOC111448419 PE=3 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 6.7e-167
Identity = 308/341 (90.32%), Postives = 324/341 (95.01%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQNP KTPLHISR+IS LQRFP EE PK  ATRCYSTASAR
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNPIKTPLHISRQISPLQRFPFEETPKTPATRCYSTASAR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VVQDLLAEVEKEKQREREQRRRAG+DTKDIDDED EDYMGVGPLIEKLEK+ LKDTG+LN
Sbjct: 61  VVQDLLAEVEKEKQREREQRRRAGLDTKDIDDEDREDYMGVGPLIEKLEKEKLKDTGNLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEE TDSD+DEDDERFS ESVKKRFD+FERKFKRHEELLK+FT+T+NIDDAFKWMSKID
Sbjct: 121 AYEEATDSDSDEDDERFSSESVKKRFDEFERKFKRHEELLKHFTETDNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           +FEQKHFRLRPEYRVIGELMNRLK+A+GKEKFILQQKLNRAMR+VEWKEAYDPNNPANYG
Sbjct: 181 KFEQKHFRLRPEYRVIGELMNRLKMADGKEKFILQQKLNRAMRLVEWKEAYDPNNPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
           VIQH +VGPS D M+QSGFEKEKQ I G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 VIQHEQVGPSVDLMEQSGFEKEKQIIQGVDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

[Close]

BLAST of Lsi10G002190 vs. ExPASy TrEMBL
Match: A0A6J1KZ96 (uncharacterized protein LOC111499608 OS=Cucurbita maxima OX=3661 GN=LOC111499608 PE=3 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 1.2e-163
Identity = 300/341 (87.98%), Postives = 322/341 (94.43%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAF+WSRL+LNQVV QNP KTP+HISRKIS   RFP EEIPK SA RCYSTASAR
Sbjct: 1   MVNKSQAFAWSRLILNQVVQQNPIKTPIHISRKISSFARFPFEEIPKTSAARCYSTASAR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VVQDLLAEVEKEKQREREQRRRAG+DTKDIDDEDGEDYMGVGPLIEKLEK+ LKDTG+LN
Sbjct: 61  VVQDLLAEVEKEKQREREQRRRAGLDTKDIDDEDGEDYMGVGPLIEKLEKEKLKDTGNLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEEP+DSD+DE+DERFS ES+KKRFD+F+RKFKRHEELLKNFT+T+NI+DAFKWMSKID
Sbjct: 121 AYEEPSDSDSDEEDERFSSESLKKRFDEFKRKFKRHEELLKNFTETDNIEDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           +FEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRA R+VEWK+AYDPN PANYG
Sbjct: 181 KFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRATRLVEWKDAYDPNCPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
           VIQH +VGPS D M+QSGFE+EKQ I G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 VIQHEQVGPSVDLMEQSGFEEEKQIIQGVDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

[Close]

BLAST of Lsi10G002190 vs. ExPASy TrEMBL
Match: A0A6J1G7C4 (uncharacterized protein LOC111451428 OS=Cucurbita moschata OX=3662 GN=LOC111451428 PE=3 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 1.1e-161
Identity = 299/341 (87.68%), Postives = 319/341 (93.55%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRL+LNQVV +NP +TP+HISRKIS   RFP EEIPK  A RCYSTASAR
Sbjct: 1   MVNKSQAFSWSRLILNQVVQRNPIQTPIHISRKISSFARFPFEEIPKTLAARCYSTASAR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VVQDLLAEVEKEKQREREQRRRAG+DTKDIDDED EDYMGVGPLIEKLEK+ LKDTG+LN
Sbjct: 61  VVQDLLAEVEKEKQREREQRRRAGLDTKDIDDEDREDYMGVGPLIEKLEKEKLKDTGNLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEEP+DSD+DE+DERFS ES+KKR D+FERKFKRHEELLKNFT+T+NI+DAFKWMSKID
Sbjct: 121 AYEEPSDSDSDEEDERFSSESLKKRVDEFERKFKRHEELLKNFTETDNIEDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           +FEQKHF LRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMR+VEWKEAYDPN PANYG
Sbjct: 181 KFEQKHFWLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRLVEWKEAYDPNCPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
           VIQH +VGPS D M+QSGFEKEKQ I G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 VIQHEQVGPSVDLMEQSGFEKEKQIIQGVDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

[Close]

BLAST of Lsi10G002190 vs. ExPASy TrEMBL
Match: A0A6J1D5I3 (uncharacterized protein LOC111017222 OS=Momordica charantia OX=3673 GN=LOC111017222 PE=3 SV=1)

HSP 1 Score: 568.9 bits (1465), Expect = 1.5e-158
Identity = 300/343 (87.46%), Postives = 320/343 (93.29%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRC--YSTAS 60
           MVNKSQAFSWSRL+L+QVV QNPTKTPLHI+R IS L+RFP EEIPK S +    YSTAS
Sbjct: 1   MVNKSQAFSWSRLILSQVV-QNPTKTPLHITRNISNLRRFPFEEIPKFSFSGAARYSTAS 60

Query: 61  ARVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGD 120
           ARVVQDLLAEVEKEKQREREQRRRAG+DTKDIDDED EDYMGVGPLIEKLEK+ LKDTGD
Sbjct: 61  ARVVQDLLAEVEKEKQREREQRRRAGLDTKDIDDEDQEDYMGVGPLIEKLEKEKLKDTGD 120

Query: 121 LNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSK 180
           LNAYEEPTDSD+DEDDERFSPESVK+RFD FERKFKRHEELLK+FT++EN+DDAFKWM+K
Sbjct: 121 LNAYEEPTDSDSDEDDERFSPESVKERFDKFERKFKRHEELLKHFTESENMDDAFKWMNK 180

Query: 181 IDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPAN 240
           ID+FEQKHF LRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMR+VEWKEAYDPNNPAN
Sbjct: 181 IDKFEQKHFGLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRLVEWKEAYDPNNPAN 240

Query: 241 YGVIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKL 300
           YGVIQ  +VG S D ++QSGF KEKQ I GADDDDEEEFDDMKERD+ILLEKLNAIDKKL
Sbjct: 241 YGVIQQEQVGSSVDLLEQSGFAKEKQIIQGADDDDEEEFDDMKERDDILLEKLNAIDKKL 300

Query: 301 EEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           EEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 EEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 342

[Close]

BLAST of Lsi10G002190 vs. ExPASy TrEMBL
Match: A0A5D3BRU3 (Putative 37S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001480 PE=3 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 2.0e-155
Identity = 290/341 (85.04%), Postives = 315/341 (92.38%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQN  KTPLHISRKISCLQR PI++I KIS TRCYSTA +R
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNLIKTPLHISRKISCLQRLPIDKISKISLTRCYSTAHSR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VV DLLAEVEKEK+RERE R RAG+DTKDID+ED EDYMGVGPLIEKL+K+N + TGDLN
Sbjct: 61  VVHDLLAEVEKEKKREREMRIRAGLDTKDIDNEDEEDYMGVGPLIEKLDKKNSRVTGDLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEEP+DSD+DEDDERFS ESV+KRF +F+RKF+RH+ELLKNFTD +NIDDAFKWMSKID
Sbjct: 121 AYEEPSDSDSDEDDERFSTESVRKRFQNFQRKFERHKELLKNFTDADNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           RFEQKHF+LRPEYRVIGELMNRLKVAEGKEKF+LQQKLNRAMRIVEWKEAYDPN+PANYG
Sbjct: 181 RFEQKHFQLRPEYRVIGELMNRLKVAEGKEKFMLQQKLNRAMRIVEWKEAYDPNDPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
            IQ R+ GPS +  +QS F K+KQTI G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 AIQRRQGGPSVNLEEQSEFAKQKQTIQGIDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

[Close]

BLAST of Lsi10G002190 vs. NCBI nr
Match: XP_038902106.1 (uncharacterized protein LOC120088744 [Benincasa hispida] >XP_038902107.1 uncharacterized protein LOC120088744 [Benincasa hispida] >XP_038902108.1 uncharacterized protein LOC120088744 [Benincasa hispida])

HSP 1 Score: 610.9 bits (1574), Expect = 7.1e-171
Identity = 319/341 (93.55%), Postives = 325/341 (95.31%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQNP KTPLHIS K SC  RFP EEIPKISATRCYSTASAR
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNPIKTPLHISWKNSCFLRFPFEEIPKISATRCYSTASAR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VVQDLLAEVEKEKQREREQR RAGIDTKDIDDEDGEDYMGVGPLIEKLEK+ LKDTGDLN
Sbjct: 61  VVQDLLAEVEKEKQREREQRLRAGIDTKDIDDEDGEDYMGVGPLIEKLEKEKLKDTGDLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEEPTDSD+DEDDERFSPESVKKRFDDFERKFKRHEELLKNFT TENIDDAFKWMSKID
Sbjct: 121 AYEEPTDSDSDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTATENIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG
Sbjct: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
           VIQH +VGPS D  +QSGFEKE+QTI  ADDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 VIQHGQVGPSDDLTEQSGFEKERQTIQRADDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

[Close]

BLAST of Lsi10G002190 vs. NCBI nr
Match: KAG6571211.1 (hypothetical protein SDJN03_30126, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 600.9 bits (1548), Expect = 7.4e-168
Identity = 310/341 (90.91%), Postives = 325/341 (95.31%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQNP K+PLHISRKIS LQRFP EE PK  ATRCYSTASAR
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNPIKSPLHISRKISPLQRFPFEETPKTPATRCYSTASAR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VVQDLLAEVEKEKQREREQRRRAG+DTKDIDDED EDYMGVGPLIEKLEK+ LKDTG+LN
Sbjct: 61  VVQDLLAEVEKEKQREREQRRRAGLDTKDIDDEDREDYMGVGPLIEKLEKEKLKDTGNLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEEPTDSD+DEDDERFS ESVKKRFD+FERKFKRHEELLK+FT+T+NIDDAFKWMSKID
Sbjct: 121 AYEEPTDSDSDEDDERFSSESVKKRFDEFERKFKRHEELLKHFTETDNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           +FEQKHFRLRPEYRVIGELMNRLKVA+GKEKFILQQKLNRAMR+VEWKEAYDPNNPANYG
Sbjct: 181 KFEQKHFRLRPEYRVIGELMNRLKVADGKEKFILQQKLNRAMRLVEWKEAYDPNNPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
           VIQH +VGPS D M+QSGFEKEKQ I G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 VIQHEQVGPSVDLMEQSGFEKEKQIIQGVDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

[Close]

BLAST of Lsi10G002190 vs. NCBI nr
Match: KAG7011014.1 (rpsE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 597.0 bits (1538), Expect = 1.1e-166
Identity = 311/342 (90.94%), Postives = 325/342 (95.03%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQNP KTPLHISRKIS LQRFP EE PK  ATRCYSTASAR
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNPIKTPLHISRKISPLQRFPFEETPKTPATRCYSTASAR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VVQDLLAEVEKEKQREREQRRRAG+DTKDIDDED EDYMGVGPLIEKLEK+NLKDTG+LN
Sbjct: 61  VVQDLLAEVEKEKQREREQRRRAGLDTKDIDDEDREDYMGVGPLIEKLEKENLKDTGNLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEE TDSD+DEDDERFS ESVKKRFD+FERKFKRHEELLK+FT+T+NIDDAFKWMSKID
Sbjct: 121 AYEEATDSDSDEDDERFSSESVKKRFDEFERKFKRHEELLKHFTETDNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           +FEQKHFRLRPEYRVIGELMNRLKVA+GKEKFILQQKLNRAMR+VEWKEAYDPNNPANYG
Sbjct: 181 KFEQKHFRLRPEYRVIGELMNRLKVADGKEKFILQQKLNRAMRLVEWKEAYDPNNPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGA-DDDDEEEFDDMKERDNILLEKLNAIDKKLE 300
           VIQH +VGPS D M+QSGFEKEKQ I G  DDDDEEEFDDMKERD+ILLEKLNAIDKKLE
Sbjct: 241 VIQHEQVGPSVDLMEQSGFEKEKQIIQGVDDDDDEEEFDDMKERDDILLEKLNAIDKKLE 300

Query: 301 EKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           EKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 EKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 342

[Close]

BLAST of Lsi10G002190 vs. NCBI nr
Match: XP_022943762.1 (DEAD-box ATP-dependent RNA helicase 42 [Cucurbita moschata] >XP_022943763.1 DEAD-box ATP-dependent RNA helicase 42 [Cucurbita moschata])

HSP 1 Score: 596.7 bits (1537), Expect = 1.4e-166
Identity = 308/341 (90.32%), Postives = 324/341 (95.01%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQNP KTPLHISR+IS LQRFP EE PK  ATRCYSTASAR
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNPIKTPLHISRQISPLQRFPFEETPKTPATRCYSTASAR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VVQDLLAEVEKEKQREREQRRRAG+DTKDIDDED EDYMGVGPLIEKLEK+ LKDTG+LN
Sbjct: 61  VVQDLLAEVEKEKQREREQRRRAGLDTKDIDDEDREDYMGVGPLIEKLEKEKLKDTGNLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEE TDSD+DEDDERFS ESVKKRFD+FERKFKRHEELLK+FT+T+NIDDAFKWMSKID
Sbjct: 121 AYEEATDSDSDEDDERFSSESVKKRFDEFERKFKRHEELLKHFTETDNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           +FEQKHFRLRPEYRVIGELMNRLK+A+GKEKFILQQKLNRAMR+VEWKEAYDPNNPANYG
Sbjct: 181 KFEQKHFRLRPEYRVIGELMNRLKMADGKEKFILQQKLNRAMRLVEWKEAYDPNNPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
           VIQH +VGPS D M+QSGFEKEKQ I G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 VIQHEQVGPSVDLMEQSGFEKEKQIIQGVDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

[Close]

BLAST of Lsi10G002190 vs. NCBI nr
Match: XP_023512942.1 (uncharacterized protein LOC111777531 [Cucurbita pepo subsp. pepo] >XP_023512943.1 uncharacterized protein LOC111777531 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 596.3 bits (1536), Expect = 1.8e-166
Identity = 309/341 (90.62%), Postives = 323/341 (94.72%), Query Frame = 0


Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQNP KTPLHISRKIS LQRFP EE PK  ATRCYSTASAR
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNPIKTPLHISRKISPLQRFPFEETPKTPATRCYSTASAR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VVQDLLAEVEKEKQREREQRRRAG+DTKDIDDED EDYMGVGPLIEKLEK+ LKDTG+LN
Sbjct: 61  VVQDLLAEVEKEKQREREQRRRAGLDTKDIDDEDREDYMGVGPLIEKLEKEKLKDTGNLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEE TDSD+DEDDERFS ESVKKRFD+FERKFKRHEELLK+FT+T+NIDDAFKWMSKID
Sbjct: 121 AYEEATDSDSDEDDERFSSESVKKRFDEFERKFKRHEELLKHFTETDNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           +FEQKHF LRPEYRVIGELMNRLKVA+GKEKFILQQKLNRAMR+VEWKEAYDPNNPANYG
Sbjct: 181 KFEQKHFWLRPEYRVIGELMNRLKVADGKEKFILQQKLNRAMRLVEWKEAYDPNNPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
           VIQH +VGPS D M+QSGFEKEKQ I G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 VIQHEQVGPSVDLMEQSGFEKEKQIIQGVDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

[Close]

BLAST of Lsi10G002190 vs. TAIR 10
Match: AT1G64880.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 371.3 bits (952), Expect = 8.9e-103
Identity = 215/369 (58.27%), Postives = 269/369 (72.90%), Query Frame = 0


Query: 4   KSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQR-----------------FPIEEIP 63
           +++A SW RLLL     +NP  +    SR+IS L                   FP+ + P
Sbjct: 4   RTRASSWPRLLL----RRNPRSS---FSRQISTLDSSTSTFPRRISGYYSSSFFPVNQTP 63

Query: 64  KISATRCYSTASA--------RVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDY 123
            IS+ R    +S+        RVV++L+AEVEKEKQRERE+R+R G+D KDID ED EDY
Sbjct: 64  WISSQRYRFFSSSTMSPSEADRVVRELIAEVEKEKQREREERQRQGLDYKDIDAEDEEDY 123

Query: 124 MGVGPLIEKLEKQNLKDTGDLNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEE 183
           +G+ P IEKL+KQNLKD G+LN  EE +DSD++ D+     E  +K+ D F +KF+RH+E
Sbjct: 124 LGIEPFIEKLKKQNLKDDGELNRREESSDSDSEYDEIDLDEE--RKKEDIFNKKFQRHKE 183

Query: 184 LLKNFTDTENIDDAFKWMSKIDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKL 243
           LL+  T +E +D+AF+WM+K+D+FE+KHF+LRPEYRVIGELMNRLKVAEGKEKF+LQQKL
Sbjct: 184 LLQTLTKSETLDEAFRWMNKLDKFEEKHFKLRPEYRVIGELMNRLKVAEGKEKFVLQQKL 243

Query: 244 NRAMRIVEWKEAYDPNNPANYGVIQHRKVGPSADPMDQSGFEKEKQTILGA------DDD 303
           NRAMR+VEWKEA+DPNNPANYGVI+        D +   G E+E++ +         DDD
Sbjct: 244 NRAMRLVEWKEAFDPNNPANYGVIER-------DNVQGGGEEREERLVADGPKDDNDDDD 303

Query: 304 DEEEFDDMKERDNILLEKLNAIDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTE 342
           DEEEFDDMKERD+ILLEKLNAIDKKLE KL+ELDHTFGKKGK LEEEIR+LAE+RN+LTE
Sbjct: 304 DEEEFDDMKERDDILLEKLNAIDKKLEIKLSELDHTFGKKGKRLEEEIRELAEDRNALTE 356

The following BLAST results are available for this feature:

BLAST of Lsi10G002190 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G002190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXC7	6.7e-167	90.32	DEAD-box ATP-dependent RNA helicase 42 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1KZ96	1.2e-163	87.98	uncharacterized protein LOC111499608 OS=Cucurbita maxima OX=3661 GN=LOC111499608...	[more]
A0A6J1G7C4	1.1e-161	87.68	uncharacterized protein LOC111451428 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]
A0A6J1D5I3	1.5e-158	87.46	uncharacterized protein LOC111017222 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5D3BRU3	2.0e-155	85.04	Putative 37S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lsi10G002190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902106.1	7.1e-171	93.55	uncharacterized protein LOC120088744 [Benincasa hispida] >XP_038902107.1 unchara...	[more]
KAG6571211.1	7.4e-168	90.91	hypothetical protein SDJN03_30126, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011014.1	1.1e-166	90.94	rpsE, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022943762.1	1.4e-166	90.32	DEAD-box ATP-dependent RNA helicase 42 [Cucurbita moschata] >XP_022943763.1 DEAD...	[more]
XP_023512942.1	1.8e-166	90.62	uncharacterized protein LOC111777531 [Cucurbita pepo subsp. pepo] >XP_023512943....	[more]

BLAST of Lsi10G002190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64880.1	8.9e-103	58.27	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..86
None	No IPR available	COILS	Coil	Coil	coord: 313..336
None	No IPR available	COILS	Coil	Coil	coord: 288..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..89
None	No IPR available	PANTHER	PTHR13718:SF61	28S RIBOSOMAL PROTEIN S5, MITOCHONDRIAL	coord: 60..343
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 60..343

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G002190.1	Lsi10G002190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome