Lsi10G002120 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGGAAAGTGAAGTTTCCTGACATTACTAATTTTCCTGCTCTTTATCTCTCCCACGCTTTGTCTGGTGATACTCCCTTCTTTCAAATTGCTTCCAAGCTCCAACCTCTACAACTTCCTCTTTCTCCAAGAAATTCGTCGAATTCTTCGATCATTAGCTATGCAGGTAACAAATCCCTCAATTTCCACTTCTTTCTTTCAACTTTTGCTCTCTGATTTCCGTAATCAACTTCAAATTTTCCTTGTTTTTTCATCTTCATTTCTTCTGTTCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGGAGAAATTGAGCATATAGAGATTCAATGGTAGGTGATTAACTCTCTGTTCCTGTAAACAGAGTTTCAAAAAGTGGTAAAAGAGAAGATGTGCGTGATTGATTGATTAATTATGATTCTCTTTTCTATGCTGCTGATTTAGTTTTAGGTTTCTTATTGTTTGGCTTCCGAGGGAAAGTAGTTAGCAATTAAGCATGCGAGTTTTGTGGATTTCTCTTTATTTTTCTTTTTGATTCTTGTTTTTCTTTATCAATAATAAGTGTGAGGGTTGTAATTGTTATAGCTGACAAGTAATTAAGATTGACAAGTAATTAAGATTGTTATTCTAATTTTTTTCTTGTTGCTGCAGTGAACAAGGGGAATCCAAGACTGCGTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGTATTTCATTATCTCGATTCTCTTTCATTTTCACGAAGTCAGTTATTGGGATGTGTTTGTTGAACTTGTGGTCTTACAATGAATGTCAAAGAGCGTCATGTTGAAGTTTGGTTCATGTGGGTCTACATTTGGCTGTGTTTACCTTCTTATTTAAGCCATTTGATTTGTTAGTGTCTAGTTAGTTCTATAGCCTCTTTACTTTTATTTCCTTCATTTTCGTGCCATTAGTTTTGATTGAATTGAAAAGTGAAGGATGAGTAGAATCTCGGTTTATTTTATTTTATTTTTTTTAATGAAAATACTTTTTCTTCATAAGAAGATTTTTCTACACGTAATCTCAAACATACAGGAGAAATTTCTTTAGAGCTGTCATATACGATCTTTTAGTTGAAGCTACCCTGCTTTTGCATTTTGTATTTCTCATCACCACCCCACTCTTTCTAATAAAATAATACTAATATTAAATCATAGATTAGTTATCAAACTAATGTTAAAAGTGGCATGCTCTGGGATAGTTCTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGTGAAGAAAGAAAGAAAGAAGAAGAAGAAGAAGAAGATGATGAGAGTTGAGTAATGGTTGAAACTTGAAAGTGAAAACTATTAAACTGAACTTTATGAATAAACATCTGCCTTGCTTTTACTTTTTGTTACGAATAAAAGCATTAGTGAGAATTACTAAATGGACATGTTTCTAGAAAAAGAAGGAAGCTAATACCTTTTCTTTGCATGATCATTTCTTTATGCAATAGTGGAATTATTTGATATTTTCATCACGCAATACTGGAAATATACCTTTTCTTCTTCATATCTGGCTGATGCCATAAGCTACTATAAACAATTTCTATTGTTTATTTGTTTGTTATTTAGGGAGCAACTATTGTAGATCAGATCGTGAGCATATCTCCTGCTGAAAATCATGTACCAAGAAGAGAAATGCAGGTATTATTCTTGTGTTTGAATATTTTTCCAGGCCCGTCTAGCTTATTATATATTCAATATTTTAAATTTTCTATGTTTGCAGGAAGTACGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGTAAATGTGTTGACCTCAATCTATGAATATCAAGTATTTGTGTAGCATATTCTTTCACGTTGATCTACTATTTAAAGAAAAACCAAGGCGGGGGAGTTTCATCAAATGGGAAAGTTTAGGACATGTTTCATGTTTTCTGTATTTAGATTTTCTTAAATTGATGTAGATGGATGATAAGTAAAACCTCAATTGAATGCATGTCGTCATGGACCTCACTACACTTGCTAAAACCATGGTGAAGAACTGGTGAAACAGTTTCACACTTTTAGTTTTCATGTGGATCTTCATTTCCGTGATTTGTGCACCTTTTCTTTTTTTCCCACCTTAAATCTTTTTGTGTTTATAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTAGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCGGTTAACAGCTAGTGCATCTGCAAAGGTATTATCCTTTGACAGAAGGGTTGGGCTCACAGAGAAATTAACAGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTAGATCAAAAACTTCACGTTTCAGATAAAACAATGGCTGCAATCTTCGCAGCTGAGAGGAAACTCAATGATACAGGTTCTGCTGTCAAAACAAGCAAGTATGAATCATCCTTCTTGAGGAAACATACGTTGCCATTTTTATTTGCACTGCTCTATTTTGTTAGCTTATCCCCTAAGAAATTTTTACTTCCCTTCTGCTATCTTCAAATTTTAGAACTTGAATATTCTCCACTCCTAGCAAGAAAGCAGAAAATTAGATTTCTAGAATAGCTCCCAAACAACTCCCTAGTGTTTCAACTTCTTGAGAACTTTAGATCATCGTATATTTCTTTTATCCCAAATAAATTACAAATGGATCTACTATTCGTTCAGAATAAATCAGTTATGACAATAGACGGAAGTGAATTAATTGAATTGTTTCACTCCATCTTGGCGTTGAACAGGTATGTGACAGCAGGAGCTGCTTGGCTAAATGGTGCTTTTGGCAAAGTCGCAAAAGCAGGGCAGGCAGCAGGTACGAAAACCAGAGAGAAGTTCAATTTGGCTATGTCAAACTTAGTTTCAAAGGTGCGTTTATGAAACCCTTTTATTTAAGTCAGAATTCTTCGAAAATCGCTTTGCTGTGAGTAACTTAAGGACAAGCTTAGGAACAACAGTTTTGATGAATTAGTTCTCAAATATATTTTTCTAGTCTTTTGTTTTATGCATTAGCCAAAACCATGCCAAAAGAAGAGAAAGCTCCCTAA TGGAAAGTGAAGTTTCCTGACATTACTAATTTTCCTGCTCTTTATCTCTCCCACGCTTTGTCTGGTGATACTCCCTTCTTTCAAATTGCTTCCAAGCTCCAACCTCTACAACTTCCTCTTTCTCCAAGAAATTCGTCGAATTCTTCGATCATTAGCTATGCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGATGAACAAGGGGAATCCAAGACTGCGTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAACTATTGTAGATCAGATCGTGAGCATATCTCCTGCTGAAAATCATGTACCAAGAAGAGAAATGCAGGAAGTACGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTAGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCGGTTAACAGCTAGTGCATCTGCAAAGGTATTATCCTTTGACAGAAGGGTTGGGCTCACAGAGAAATTAACAGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTAGATCAAAAACTTCACGTTTCAGATAAAACAATGGCTGCAATCTTCGCAGCTGAGAGGAAACTCAATGATACAGGTTCTGCTGTCAAAACAAGCAAGTATGTGACAGCAGGAGCTGCTTGGCTAAATGGTGCTTTTGGCAAAGTCGCAAAAGCAGGGCAGGCAGCAGCCAAAACCATGCCAAAAGAAGAGAAAGCTCCCTAA ATGCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGATGAACAAGGGGAATCCAAGACTGCGTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAACTATTGTAGATCAGATCGTGAGCATATCTCCTGCTGAAAATCATGTACCAAGAAGAGAAATGCAGGAAGTACGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTAGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCGGTTAACAGCTAGTGCATCTGCAAAGGTATTATCCTTTGACAGAAGGGTTGGGCTCACAGAGAAATTAACAGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTAGATCAAAAACTTCACGTTTCAGATAAAACAATGGCTGCAATCTTCGCAGCTGAGAGGAAACTCAATGATACAGGTTCTGCTGTCAAAACAAGCAAGTATGTGACAGCAGGAGCTGCTTGGCTAAATGGTGCTTTTGGCAAAGTCGCAAAAGCAGGGCAGGCAGCAGCCAAAACCATGCCAAAAGAAGAGAAAGCTCCCTAA MQSQTRTVQVKHVSDLATEREIHDEQGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAAKTMPKEEKAP Homology
BLAST of Lsi10G002120 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 3.8e-38 Identity = 100/253 (39.53%), Postives = 150/253 (59.29%), Query Frame = 0
BLAST of Lsi10G002120 vs. ExPASy TrEMBL
Match: A0A0A0LNE8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G431170 PE=4 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 3.8e-110 Identity = 227/254 (89.37%), Postives = 231/254 (90.94%), Query Frame = 0
BLAST of Lsi10G002120 vs. ExPASy TrEMBL
Match: A0A5D3BPG7 (Binding partner of ACD11 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001350 PE=4 SV=1) HSP 1 Score: 403.3 bits (1035), Expect = 7.2e-109 Identity = 225/254 (88.58%), Postives = 230/254 (90.55%), Query Frame = 0
BLAST of Lsi10G002120 vs. ExPASy TrEMBL
Match: A0A1S3CIA3 (binding partner of ACD11 1-like OS=Cucumis melo OX=3656 GN=LOC103501087 PE=4 SV=1) HSP 1 Score: 403.3 bits (1035), Expect = 7.2e-109 Identity = 225/254 (88.58%), Postives = 230/254 (90.55%), Query Frame = 0
BLAST of Lsi10G002120 vs. ExPASy TrEMBL
Match: A0A6J1IKN1 (binding partner of ACD11 1 OS=Cucurbita maxima OX=3661 GN=LOC111478298 PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 1.8e-107 Identity = 221/254 (87.01%), Postives = 232/254 (91.34%), Query Frame = 0
BLAST of Lsi10G002120 vs. ExPASy TrEMBL
Match: A0A6J1GFF4 (binding partner of ACD11 1 OS=Cucurbita moschata OX=3662 GN=LOC111453443 PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 1.8e-107 Identity = 221/254 (87.01%), Postives = 232/254 (91.34%), Query Frame = 0
BLAST of Lsi10G002120 vs. NCBI nr
Match: XP_038881171.1 (binding partner of ACD11 1-like isoform X2 [Benincasa hispida]) HSP 1 Score: 407.9 bits (1047), Expect = 6.1e-110 Identity = 228/254 (89.76%), Postives = 231/254 (90.94%), Query Frame = 0
BLAST of Lsi10G002120 vs. NCBI nr
Match: XP_004151849.1 (binding partner of ACD11 1 [Cucumis sativus]) HSP 1 Score: 407.5 bits (1046), Expect = 7.9e-110 Identity = 227/254 (89.37%), Postives = 231/254 (90.94%), Query Frame = 0
BLAST of Lsi10G002120 vs. NCBI nr
Match: KAE8652335.1 (hypothetical protein Csa_022102 [Cucumis sativus]) HSP 1 Score: 406.4 bits (1043), Expect = 1.8e-109 Identity = 226/254 (88.98%), Postives = 231/254 (90.94%), Query Frame = 0
BLAST of Lsi10G002120 vs. NCBI nr
Match: XP_008462804.1 (PREDICTED: binding partner of ACD11 1-like [Cucumis melo] >KAA0066322.1 binding partner of ACD11 1-like [Cucumis melo var. makuwa] >TYK00958.1 binding partner of ACD11 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 403.3 bits (1035), Expect = 1.5e-108 Identity = 225/254 (88.58%), Postives = 230/254 (90.55%), Query Frame = 0
BLAST of Lsi10G002120 vs. NCBI nr
Match: XP_038902413.1 (binding partner of ACD11 1-like [Benincasa hispida]) HSP 1 Score: 402.9 bits (1034), Expect = 2.0e-108 Identity = 220/240 (91.67%), Postives = 223/240 (92.92%), Query Frame = 0
BLAST of Lsi10G002120 vs. TAIR 10
Match: AT5G32450.1 (RNA binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 294.3 bits (752), Expect = 9.1e-80 Identity = 170/250 (68.00%), Postives = 200/250 (80.00%), Query Frame = 0
BLAST of Lsi10G002120 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 166.0 bits (419), Expect = 3.7e-41 Identity = 102/239 (42.68%), Postives = 149/239 (62.34%), Query Frame = 0
BLAST of Lsi10G002120 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 ) HSP 1 Score: 159.8 bits (403), Expect = 2.7e-39 Identity = 100/253 (39.53%), Postives = 150/253 (59.29%), Query Frame = 0
BLAST of Lsi10G002120 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 ) HSP 1 Score: 157.9 bits (398), Expect = 1.0e-38 Identity = 98/254 (38.58%), Postives = 150/254 (59.06%), Query Frame = 0
BLAST of Lsi10G002120 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 156.4 bits (394), Expect = 3.0e-38 Identity = 93/240 (38.75%), Postives = 154/240 (64.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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