Lsi10G001470 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G001470
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerase subunit beta''
Location	chr10: 2381740 .. 2399576 (+)
RNA-Seq Expression	Lsi10G001470
Synteny	Lsi10G001470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAAAGTGAATTTAATTATGGATTTAGATAAGAAAAGAAAGCTACAGAAACCAATAAAATATGTATAAGTGGATTTTGAAGGAAAATACATTTTGATTTTTTGTTCATTGTTATCTCCAGAGGTTGATGGAAACTTGTCTGTTGTGAGGTGCATTTGCAGGGCACGTAAGGGAAACCCATCCCTCTCTATGCTGCCATACTTGTCTTTCTCTCATCTTTCTGAATAGAATAGCCATAATCTTTGGTAATTCTTTTTACAGATTTTGTAACTGTGATTCTTGTTTATGTATAAGCTAAGGATTTTTGTGGGGATGATTAAATTATAGGTAAGTTTGTGGGTCAAATTAGGCGTCTGATGAGGAAATTCAGAAGAGTTCATTGGAATTTTCATCTCGAAATGTAATGTAATGGGCCGACGTGTCGTATTAGTTTGTTGACACGTTCAAGCAGTTTTAAGATGGACGTGTGATGTGTCGTAATGAAAATGCAAAAAGGTTACCATTTTACAAGTTTTTGCATATTATCAGCTACACATTGGCATTGTTATCTGAAACGTTGGGTAAAGGTAAAACCTTTAAGTCTGTTTTAAAAACTACAAACATAGAAAATTCTAAAAAAATAAAACTACAACATTGAAAAATTAGTAAAACAAAAAAAAAAAATTCAAAACTATTTATAGAAAATAATAAAAAAAAATATATATATATTGATAAGATATTGAAAGACTTTTATCATTTCTATTACTGATAGACTTTGATAGAGTTTTATCCGCGTCTATCACAACTATCTAAAAATTTTACTATTTTGTGTAAATATTTTTTCTTATTTTTTTATTTTTAAAAATTTTTCTTTAAATTAATTTTAAAAAGTTTTTTTTTTATTAAAATAAAGGATGAAAATCAATGGATAAAAGTTGATATGTGATATTATTTATTATGGTATGGAAAAGTAAAATGGTGTTTACCATTTATTTTATCTCAAGAGATTTTGTTAAAATTATTTACAAAAACAATTTTTATACCAGTTGTCACATCAATTTAATGATTTATTAATGATGTCATATATGTCTTCTAATTTTTTCACATTATTCGATCTTATATTAACAGAAAAAACTATAAATATTTTTGGAAAAAAATTTAATGATAATAAAAAAAAATTTAAATCTAAAGGCATAATTAAAACTTATCAAGTTTAGAGATATTTTGTATAAGTTAATCTTAATTTTATACGTAGTGAACTATATGTCATACAGATAGAAGAGACTTGAACCTACAACCTTTTAAAAACAACAGAAATATTTTAATTGGTTATAGCCAATACTAGACTAAATATTTGTCGATTAGTTGATATCTCTCTAAAGTATGACATCAATATCAGAGTTTAATGAGTCTTTGCAATATCTTGTATAATTATCATTAAATTACATATGATAAAATTAATTAATCACCAATAAAAATATGAGAAATTAGCAAAACTACTGAAAATATTTACAAATATAGCAAAATATCACAGTCTATCACTGATAAACACAAATAGATGTCTATTAGTATCTATCAGTATCTATAAGTAATAGATGATAGTAGTTTATTAGTGTCTATTGCTAATAAACAGTGACATTTTACTATATTCGTAACTATCTTGGTTCATTTTATTATATTTGAAAACTGTCCCTATAAATATAAATATTAATAATGTGATCTATTACTTATTGAAAGAGAAAAAAAAAAAACTTCGTTATTAATTTAAGTAATTTTTTTATTAATTATTTCACTTACAAGAATACATGTCAATATCAATATTTTATTCCTATATTATTCCTATATTTTTAGAGTTTGAAACATTTTTATCTTTAGTCATAGCTAATGAAATTAAATATATCCCTTCTTATTTACTCAACCATATTTATACTATATATATAAAAAAGAAGAATTTTTGCATCTTTATTTTGTCTTTATATTATTTAATAACTCTTATAGTCAAAAATGATATTCTTCTGTGTATAAATAATATTTAGACTCCAGTCTAAATAAAAAAAATTAAAAAATATTTTTGATCCCTAAACTTTTATGAAAGTAACAATTTAGTCTCTGAATTTTGGTTTATAATGATTTAGTTTCTGTACTTTTAATTTTGTAACAATTTAGTCCTCGAACTTTAGTATGTATCAATTTAGTCCTTGTACTTTCAAATATGTAACAATTTAGTCTCTAACGTAAAAAACAATTATCAAAATTAGATGATAATTTTTTTATTTTATGATGTAGACCCTGTATTTTATAAAAATATTGAGTCCTTAATTACTTTATCGGTTCATTTATTCAAGAAATCTCATTAAATTTTAACACTATTTTCTACAATAAAGACTAAATTGTTACAAATTTTAAAGTACAAAGACTAAAATGTTACACAGTAAAGTTTAGTGACTAAATTGTTACAAAATTAAAAGTTTAGGGACTAAATTGTTACGAACCAAAGTTCAGGGACTTAATTGTTACTTTTATGAAAGTTTTAGGGATTAAAAGTAATTTTTAACAAAATAAAAAAACATAAATAATCTAATATATTTAAGGAAAATTTTCACATATAGGAAAAATGTCAAACTATTTACAGAAAATAAAAAAATACTGATAGACATTGATAGATTTCTTTCAATATCTATTAGTGATAAACTTCTATCATTTCTATCTTTGATAGACTTTGATAGACTTCTATTAGCATCTATCACAACTATCTAAAAATTTTGCTAGTTTTTATAAATAGTTTTTTTATTTTTTTTATTTTTAAAAATTCTCTTATATTTAAATAGAAAACTACGATCTTCACTACAACGATTGAGATGGGAGAAAATATATAAAATAATTGGGTTAGTGATCGGTTAAAGAGGTTGGAAATGGATAAGCTTGGGGTGTGTTTCAAAATTTCATTCTATCTTGAAAATGAAAATGTTGGCGTATGTTTAATAATAATAATAATAATAATAATAAAATTTTAAATTTTTCAATAAAACAGTTAAATGAATGGTAGAGTATGAAAATGAATGCAAATTAAATGATCCGTATGGGTTGAAGGGATCCAAAGGAGGCTGCGTCAACTTATAATATTCCTATGAACTTAGTCGATAATAACTTGATGCACATCAACAACCCTTCCCCACCGCTTCACCTCATACTTTGTATTGTCAAATAAAAATAAACTTTCCATTGCATCCTAATCTTTTATTTTATTTATATTCTCACACAATTAATATTCTTATTACAAAGTTGATATAGTTAGATTCTTCAACTCTAATTAATATTTAATCTCAAAATATATGAGCTACTACAAATAAGTATGCTAGTTTTAGTTTGTAATACGATTCATCATGCATGAATTCTCGATAGTTTACGGGATAAATTGATAAAACTGTCATTTTCAGCTCAAAAAATAAAATCAGTGGTTTCTTTAAATTAACAATATTACATCATCATTTAGTTAAAGGTACCTATTAAAAAGTTTGTTATTAATTTGCTCACGTCATATAACTTTTGTAGATAAGTTTGAATTGGCTTTTTTTGTTATTATTCTATCTATTTAAGTAAGAACAATTTTCAGTGATAGAATTTTTTAATCTTTATATCTACATTTAAGATGGTAATAAATGTCTTAGTTTATAATTTTAAACATGGAGAATTTTTAAAAATAGGAAAGTAAGGAAAACTATTTATACAAAATAGCAAAAATTTTAAATAGTTATGATAGACGTTGATAGAAGTCTATCAGAGTATCAGTGATAAAAATGATAAATGTCTATATTAATAGATGCTGATAGAAGTCTATCAATATCTTTTAATATTTTTTTTACTATAAATAATTTAATATTTTTTTTATTTGTGAAAAGTTTCCAATATATAATTGGGAATGGATGATGATTAATTTTGGTTTGATATAGGTAGTCCTCGGGAGGTGTGAGAACAAAATTTGGGTTATCTTCAAAGGAGGGTGGAAAATGGGGCCAAGAGTGGCCATAGATTGGGTTACCTTTTTTCAGCATTTCGAGGAATATCTCGAAACCTTTCTACATTTTCTCTTCTTATTTATTTATTTGTTCTTAGACCTCATCTCATCCACATCATTTAAATAAATATACTTTTTTTCTTTTATTTTTATTTTTTGTTTTGCTTCTTAATAATTTCCCTTTCTTACAAGTACTCGTTTTTCCGACCTCTTTGTTTATTAAATTCAAATCTAATCTGACCAAGAAGAATCATAATGGTATCATTGTTCTTTTTATTTATGAAGATATATGAATAGAAGATAAAAAGAAATTATATTGAAACTTTGTTACAACAAAAATACTACTTCTTTGATGAAGCTATTTTGTTTTCCAACTTACATGGAAAAGTGGAAGTTGGAAGAGATTTTTTTACTTTTTTTTTTTTATGAAAAATTACTATAAACCGAAAAAAAATTAAACATTTACAAATATAGACTTCTATCGTTGTTTATCGCTCAAGCAATAGAATTCTATTGTGGTTTGTCGCTGATAGACAGTAAATTTTTTCTATATTTATAAATAGTTTGAAATGGATATTCTGATCGTAGTTTTCTATATTCTGATATGCCAAATATGTTAGAGCAATTACTGGAGAAACAACTCATTGAACTTCCTAAATGTAAACTACCTGCAGAAATGGGGAAAGTAAATGATCTCAATTATTGCAAATATCATCAAGTTGTTAGTCATCCAGTAGAAAAGTATTTTGTATTGAAAGAGTTAATTTTGAAGTTAGCCCAAGAGAAAAAGATTGAGTTGGACCTCAACGATGTGGCGCAAACAAATCATGCCACAGTAATGATTCATCCTAATATTCGACTGTCTGCTTCAGGAAGTTTAATCCAATTTGGATCTCTCGACCTTATTCTTATATATTCTTCACCGGAGGCCTCACAAAAGATCGACCTTCAAAAAGTTGATTCCCAAGAAAAGAAGAACAAGTGGAAGATGTAGATAATAGGTGGATGTTGGTAACCCATCAGAAGAAGCGTAAACAAAATTTTGTCCAAAAAGAATCCCGTTCGTACCAAGATCATAAGAGGAAAAGTAAGTCTCAAAGAAGAAAAACAAAGAAGAGTACGAGAAGACTTCAACCAATCATCAAAGAAAGCAAGAAGTTTCCTCGACCTTGACAACCAAAAACCTTAAAAGATTTCTTTCCAATGAGCTTTCCAGTTGAAATTGTTTCGTGTCACGTCGTCAATACGGAAGAAAATGATGGCACTCCTTCAAATTTTACAGAAGCAATGATCAAGCTGGAGTAACTACCTTCTTTCAGCATGAATGATTTATTGTCACTCCCACGAGAGACCAAAAACACGCTTATCAAAATACTAAAAGATGAAAGCATTCCAATTGCTTCTACTTCCCAAGCAAATACGTGTGTTTCATGTTGTATATCGATATCGTTTACTAAAGAAGATTTGTTACTTGGGGTCAAAACTTCATAATAGACCTCTATTCGTCTCAGGATGTGTCCAAGAGCAAAAGCTCAGTCGAATCCTCATCGACGATGGCTCAGCTGTCAACATAATGCCAAAGTCAACCATGAACCAACTTACATTTCAATGGATGAGTTATCAAATAGTAAGCTGGTGATTCAAGGTTTTAATTAGGGAGGACAGCAAGCCATAGGCATGATTTGCCTAGAACTCGTCATAGGGGATTTGAAAGCAAACACCCTATTTCATGTGATTGATTCAAGAACCACATACAAGCTTTTGTTAGGGAGTCCCTAAATTCATGAAAACAGAGTAGTAACATTCATGCTCCACTAGTGTTTTAAATTCTATCAGCAGGACATCAGGAAAGTTGATGCCGACACCAAGCCATTCTCAGAGGCCGAATCTCATTTTGCTGATGCAAATTTTTATATGAAAAGCGATAATATCAGTGAAGTTATATCAAATGAAATGCCTGTGCCAAAGGTGCTGATAAGCCTGAGCAACGAGCGAGCACAACAACGAAATAGAGTGAAGCAAACGTTCTCGACAGTTATTAAATATGTTCCTCTCTCTCGGCATAAGAAGGGTGACCATTTGTAGAGTGCCCAAAGAACCTAAAGATCGGAGATATCAAAATTTCAAAGAAAAACTTCACCACACTACTCATAAAAATAGCAAAAGGAATGGACCAAAAGACTGAAAAAGAAGAGGATAAGACGATTTTTTTCCAGAGAAACGGATAAAAGACAGGTTCAATCCAAAAGCATATAAGTTGCTAGCAAAGACGGGTTATGACTTTACGACTCATACTGAGTTCAAAAGCCTGAGGATATTTGACGAAAGGCTCGAGCTTTCCCCTACTTAAAAGAAGCTTCAAAATGAAGGATATGTTATTCCTAGTTCAAAAGTCGGACTCGGATATAAGTCCTTCGAACCAATTCACATAACTAAGAAAGGAAAAGTAAAAGTTGCAGATATGCGTCACATTACCGTGGAAAAGAGCAATGATTCCAAAGAAGACCAGAGAGGCGAAGGTCAGAGGATTTTTGCTTTCGTCTCATCACCCCTTCAGCGGCACGTTCATAAGTTTTTCAAATATGTCATTAGACATAGGGTTGACAAAAATTCCCGCGGGGTCGGGTCCCCGCCTTGGAAAATTCCTAGTTTGACCAGAGATTAGGGTCAAATCGGAGAATAAAATAGGGTGCGATCGGGGATGGGGCGATGATGGTGTTGGGACTAGTGTCCTAAATCTCGAGTTTCTCGTTGTTTGTAGTTCTTGTAAATACAAATTATTGTATAAATAAAATGAAGAGTTATTTTATTTGATTCTTGTTGCATTAACTCAAATCCAATAAACAAGATCCATGGTTATTTCATGTAAACTTAAACATGTATGTGGTTGACATACAAAGTTGGCTCATGTTTAAGTAATAACCAAAAAGGTCTGTAGTATAGGGATACGGTTGGGTGCCGTAACCTGATAACATTACGGATACGAGCCACTTTGTAATTGTTACAAAAGTTGTAAAGTGTTATAGACGATGTGATCCTAATCGCTCATGTGGTGATATGTGAGTGGAAGTATTCTATGCAAAGAGTTTGTATAAGACTGAATCACGAAATGTTTAATTTCTCCTTATAACATCGTTAATTGAAGAAATTAACATTTCATAGGATGACCATAGGTAACTTGACTTTAATCTTGAGTGGGATATAAACTCTTGCTTATGAGGGCAATTCTTTGAGTTATAAAGGTGAGAGTGGCCAGATCGCCGACTCAATAAGCATTTTGGGGATTTGTCTGAGTAAGAAGCTAGGAACGTATTCTCACAAGATGGAATTCACTCATTCCCATCTTTAGGGTAAGTAGATAATTGCTCCCTTAAGGGCTAATTCTGGGTCTTGAACAATGAGGCCTTACCCTCTCATTGGCCCGAGAGAGGTTAGTTTATAGTTGGACTATAAATTGTTTGTTCATTGGAGGGATCCGTGGTACTTAAGAAGTTAGATGTACTATAGGGGTAAATCAGTAATTTGACCCAACTATAGTTACGAGCAATTGTGAAGTGTCGACTTATTGTTGATTGGTTATATCTGTGGACACGGAAATACATCTATAGTGTGAAGAGTGCAACTGTAGGTCTTTAGTGGAGTGACCTACAGTGAATGAATATTGATTAATTTAATTAAAAAGTTTAATTAATTAATCTCATATCATTGGAGTTTCTAATCTATAGGTCAAGGTCCCCTTACTAGTTCATTAAGGGTTTTGATAAGAATCAATTATTTTGGATTAATTTGAATCGTTCAAATTAAATAACGAAATTAATTATATATGATACAATTAATATAATGTATGCAAATACATTATAATATATAGTTTATTTTGAATAAGATTCAAAATTATATTTTATATTATGAGAGAGATAAATATTTGCATAAGATTCAAATATTAGAAATATGAATGAGATTCATATAGAAACAATAGATTAAATTTAATGTGAATATGATTCATATTAAAACTATAGGTTATGTGAGATAATGTTATTTGAATATGGTTCAAATTAAATTAAATATGTGATATTTAATTAATTAATTAATTGTTAATTATTTAATTAAATATATTTAATATGATTTAATATATTTTTAATTAAATTAATATTATTAATTTAATAATATTAAATTTGATTTAGTTATTATTAATTAATAAATTATTTTTTAAAATAACTCCCTTGAGAGGTATCTTCACATGAGAGTGGGGAGTTATAACTCCCCACCGCCCCTCTCTCCCTCACATAAATACACCCTTCACATAGAAGAGTGTGAATGTAAAATATATTATTAGGAGAATTTTATGAAATTAGGAAATCTAGATCCTCTTATTTTGCTATTTCCTTATTTGTATCTATCAACATCTTGTATTTATTCTCCTTTGTATTATACATATTAATCAAGAAATATATTCAAGATATAATATCCTTTATGGTATCAAAGCTTAGGTTTTTCCTAACCTAGTTCCCGTCGCCGCTTCTGCTGTCACTGTCTCATATCGACCGCTGCAGTCCCCGCCTTAGGTCCGTCGCCGCCGCATCAAATCTCAGATCTTAGATCTCGAATCAGTCGCTAACCTCATATCTATTCCAACTCGCTTGCTAACCTCAGATCTGCAGACCCGAGTTTCATTCACCCAAGTTCCACCCGACATACAAGTTTGAGGTCCGTCCGATCCATCCAGATTCGAACGGTTAGATCTGCCAGATTGTTTCGACCTGAGTTTTGTTCGCCCAAGTTCCATTTGAAATAACAAGTTCGAGTTCCATCCAGATTCGTTCACCACCAGTTAGATCTGCCCAGATCAGATCTCGTCCAGATCTGTTGTTCGCTGCATTCAGTAGTACAGATTCGTCTGTTCATCTATTTGCATATCAGTAATCCATATCCATTCCGTCCAACTTTGTGACTTTGACCAGATCTGCTTCACGCGTGCTCCGACCATCCAGAGCGGTTCAGAACTGTGCTTCCACCGTCTCGCTGACCATTCAGATCTACAAGTTTGACTCTCCTCCGTTTGAATCTGTTCAGTCCACTGACCATTCAGATCTCTCTAATCTGCTAAGAGTGGTATTCTCTTTGGTAGCTATTTTATCTTCTGCTACTCAATTAATTTTATTATCATGAAGAAAGATCATATTTTTCGTCCTATTAGTACTGTTCTCAATGAGACCAATTATCTTACTTGGGCCCATCAAATGAAAAGTTTTTTTAATTAGGAGAAAATTGTGGCGAATTGTCACTGGTGATATCTCTAACCCAGTTAAATTAGCCTCTGAAGATGACATTAAGTTTAGTGAGCGACTCGAGGATTGAGACAGTAAGAATCACCAGATTATCACTTGGCTCAGTAATACATCTATCTCTGTCATTCATGTTCAGTTTGATGCCTTTGATAATGCTAAGAAATTGTGGGATTTTTTTGCTACTATTTTTCAATCTATTGTATTGACTCACTATTATCAATTGCACAATACACTTGGCAGTCTTAACCAGGATATTGGACAATCAGTCAATGAATATCTTGCAGTTCTCCAACCTATATGGACTCAGCTGGATCAAGTCAAGATTAGCTCAAACCATCTTAGCCTTATTAAAGTCCTTATGGGGCTCCGCCCAGAATATGAATCTGTCCATGTGACATTACTTCATCGCAATCCCTTACCGTCATTGGATACAACGATTCAGGAAATTTTGTTTGAAGAAAAACGGTTTGGAATCATCCCCTCCAAGCAATTAGAAGTTGTCTTTGCCAGCATTCATTTACACAATCCTTATGGGGCTCTCTTCTATAAAAAAACTGTAAGCTCACTGGTCATAAATTTATTGATTGTCCCAAAATAAAGTGCAAGTATTGTCACAAGCGTGGTCATATTTTGGACAATTGTCCCACGCGACCACCTAGACCGCCAGGTTATCCACCAAAATCAAAACAATTTACTAAACCTGGTTCCTCATTTGTTGTTGCTGTTGCCACTCCTTCTGATGATTCATCTGCTTTCAACCCTCAGATAAGTGATCTTCAGGACTTACTAAAACAGTTAATTTCGTCTACCTCTTCTACTCTTGCTGTCTCACTAGGTAATCAATGGCTTCTTGACTCTGCTTGTTGTAATTGTAGACACCATATTTAGTCTGGGGTATTTTTATTTTTATTTATTTATTTATTACTATTATTTGTTATTATTATTATTATTATTATTTATTATGCCTTTTGTCATTTATTTATTTATTTCATTTTAAAAAATGGTTGTATTTTTATTTTTGGAAAGAAATGAGTCCTAATTAATTATAGTTTTTTTTATCATCATTATAATTTTTATTTTACTATTTTTACTATTTTATTATTTTATTGTTATTATTTTAGTTTTTTTTTTCTTTCTTTTCCTCCCCACGTTTTCATTCATTCTTCCCTAACCTATTCTTCCTCCCTATTCTCCCTCCCTATTCTTCCTCCCCCACTTACTCACTCTACCATCCTTTTTTAGTTCCTATCACTAGTATAAATAGAGGTAAAGGAAAGGTTTGAAGGGAAGTTTTTCTTTGGGGGAGAGGAAGAGAAAGTTTATTTTAGAGAAGAAGAATTTATAAAATTTCTACCAACGATAATTCGATCCCTGCGAAATTCAATCTCCAACACTAAACTCGTGATCACGGTCACTTGCACACCATTCCGACAGCGGTGTCAAACTCATCTGATGCCCAAGTAGTAGCTTTGCAAGTTGTAGAAAGTTGGTCCAGTGAAGAAGTGGAAGAAAGCTTGGGAGGAAAAAGGAAGAGTTCACAAGGAAAAAGAAAGGTAAAAAAGGTGAGTCTTCCTCTTTTGTCATTTTCATAATAGTGATGTTGATATTTCTTTTTTATTTTGTTTTTTTTTTAAATTTAAAAGTGAAATTTCCTTTTTGTTTATCTTTTACAAACAAACAACTATTTTAGGGAATTCAGTAGTGTTCTCTTTTTGGGAAAATAATCCTAGAAACACATGAAATTTTCCTCAAAGAATTCGATGACGGAATATTAGGAAATATTGATTTTCTAATTTTCTTAAGTGAGGAATTATCTTGAAATTCAAGGTAAATTCCAAGATTTTTCTAATGGCCTGAAACCGCTCATAATTATTAATACATATTTCACTACTAAATGTGAATTAATATCATTGGGACATTAAAAAAAACAAATTCTAAAATACTTTTGTTAAGACCAAAGAATAATAAGATAATTTCAAAATAAGATGTGGTAACCGTTTTTCACAACGGGTGTTGTAGGGGTGCTAACACTTTCCCTACACTCAATCGACTCCCAAACCTTAAATCTGGTTTTGTAGATCATTTTTTATTTTTTAAAAATGGTGACCAATCACACCCGAAGATGATTGGTGGCGACTCCAAACCTCTTACCTCAAAAGAGACCTTTAGGGGAGGACATTGGTCGCTCCGCGTCGCGATGACGTTGCGACAGTAATCATATGACATCTGACTTCTCTTTTATAACTGCATTTACCCCTACAAAATCACTTCCTCCAATTTATGCTGCGAATGGCAATTGTATGACCATCTCTCGTGTTGGCACAATTGACACTCCCACATTGACCCTTCCCAATACTTATCATGTTCCAAACCTGACCTTTAATCTCCCTTCCGTGGGGCAATTATGTGATCTTGGCCTAACTGTTTCCTTTTGTTCTCATGGTTGTCAGGTTCAGGATCCACAGACGGGACAGACGATTGGTACGGATTGCAAAGTGAGAAGATTGTTTGAGCTCACATCACTTCAACCCCCTACCTCTTCCATTTCTGCTTCTGTCATTGACTCTGCTATATATCAGTGGCACCTTCGTCTTGGTAAACCTTCGTCATTAATTTCTATTAGAAACTTACATAATGTTAGCAAGTTTGTTCCTTTTGATTGTTTAAACTGTAAACTTGCAAAACAACCTGCTTTATCTTTTTCTCAGTCAAATTCTCTATGTGATCAACCGTTTGACTTAATTCACAGTGATATTTGGGGTCTTGCCCCCACTACTACTGTCAATGGTTATCGCTATTTTGTCTTATTCATTAATGATTTTTTTTCATTTTACGTGGATATATTTCCTCAAAAATCGTTCTGCCTTACCTCAAATTTATATTGATTTTGCTCATATAATTCAAACCAATTCTCCCGCACCATTAAAATTCTTCGAATAGATAATGCCATGGAGTATAAAGACTCCAACCTTCTTACTTTTCTAACCCAACATGACACTCTCATTCAGCGCTCTTGTCCTCATACATCTCAACAAAATGGGCGAGTAGAACGTAAACATTGACACATTCTGGATTCTGTTCGTGCTCAACTCCTGTTTGCTTCTTGTCTTGAAAAATTTTGGGGTGAGGCTGCACTTACTTCTGTATATACCATCAATCGTCTCCCTTCATCTATTCTTCAGAACATCTCCCCTTTCGAACGATTATATGGTACTCCTACTACCTACTCTAATCTTAAAGTTTCTGGTTGCGTTTGTTTTGTTCTACTTCCTCCACATGAACATACAAAATTAGAACCTCGCGCTCGCCTCTATTGCTTCCTTGGCTACGGAACCGAACATAAAGGTTTTCACTGTTGGGATCCCCTCTCTAATAGGCTACGCATCTCTCGCCATGTCACTTTTTGGGAACATACTATGTTCTCTAGTCTCTCATCATTTCATACCTCTCTCTCAAGTTCTCACTCTTTATTTACCGATACTTTCGTTGATCTCTTCCTTTCATCTGAGTCTGTTCATGATACTGAGCTTAATCATTCTATACCAGTCTCTGTAGACCCGAATCAGTCTTCTGTCTCTATTGAGGAATCTGCACCTGTGCATACCTCAGTTCCCATTGTTCGACGCTCCACTCAGGTAAGGGAAACTCCCACTCATCTCCAAGATTATCATTGTTTTTCTATTATAACTTCCTTCGTTGAACCCACCTCTTATCACGAGGCCAATACTAATTCTTTATGGCAGCAAGCAATGAATGAAGAAGTTCAGGCCTTAGAAAAGACACATACGTAGGACTATGTTGATCTACCACTGGTAAAAGACCCATTGGTTACAAATGGATTTATAAAATAAACACTCTGATGGATCCATTGAACGATATAAAGCACGACTCGTGCTGAAAGGTTATTCACAAGAATATGACATAGATTATGAAGAGACTTTTGCTCTTGTAGCCCAGATGACGTCTGTTCGAAGTCTCTTAGCAGTTGCAGCTGCCAAATAGTGACCCCTTCTTCAGATGGATGTCAATAATGCATTTCTTAATGGGACTTTATCTGAGGAAGTATATATGAAACCACCTCCAAGTACTTCTCCTCCACCACAGAAAGTATGTCTTCTTCGTCGTGCATTGTACGGTTTGAAACAAGCTCCCCGAGCATGGTTTGCCACTTTTAGTTCTACCATCATTCAATTGGGGTTTAGTCCGAGCCCTCATGATACAACACTCTTTACGTGCCAAACACCTCATGGTATTGTTCTTCTTCTTCTATATGTTGATGATATGATTATTACTGGTGATGATCCTTATGCCATATCAGACCTGCAACGTTACCTTGGAGAACACTTTGAGAGGAAAGACCTCGGATCACTCAATTACTTTCTTGGTCTTGAGGTGTCAATGCGATCTGATGGTTACTTGTTGTCTCAAGCCAAATATGCCTCTGATCTGTTGGCTTGCTCGGGTATCACTATTACTGTCATTGCTTCCACACCACTTGATCCCAATGTTCATTTGATCCCGTTTGACGGTGTTCCTCTTGAAGATGCAAGTCTGTATCGTCAACTTGTTGGCAGTCTTATTTATTTAAGAGTGACACGACCAGACATTGCATATGTTGTTCATATTGTTAGTAAATTCATGGCTGCTCCAAGGACCATTCGTTTCACTGTTGTTCTTCGTATTCTTCGCTATGTCAAAGGTACCTTGGGACATGACCTTCAATTTTCTTCCCAGTTCTCTCTTGTGCTATCTGGTTTCTTGGCAGAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGCACTGAATCTGAATATTGTGCTCTTGTTGATGCTACCTCAGAATTATTATGGCTCCGTTGGCTTCTTACCGACATGGGCGCACCTCAACAGTTTGCTACTATACTTCATTGTGATAATCACAGTGTCATCCAGATTGCTCACAATGATGTCTTTCATGAGCGCACCAAGCATATTGAGAATGGCTGTCATTTTGTCCGCCATCACCTCCTGAGTAACACTCTCATCTTACAATCCATTTCCACTGCCAAACAACCAGCTGACATCTTCACTAAAGCATTGTCATCTGGTCGCTTCAATCAGTTATTTACCAAACTCAAGTTGGTTGCCACTCTACCATCTTGAGTTTGAGGGAGGGTGTGAATGTAAAATATATTATTAGGATAATTTTATGAAATTAAGAAATCTAGATCCCCTTATTTTGCTATTTCCTTATTTTATTTATCAACATCTTGTATTTATTCTCCTTTGTACTATACACATTAATCAAGAAATATATTCAGATTTAATATCCTTCAAAGAGGATGAGTCCCTTTTTTGGATCTCTACAAGATTGATCTCTCTTCTCTCTATCTCTAAAATTCTCTCTCAATTGATATTCATTTGTCAAAAAGGTTAAGAGCTCACAACTCTTTAGAATTGATTCTTCCTTGGAGAATAGCGAGGAAGATCATTTTAGTGGTGTCCTAAGAGGAACGTTGAGTTCCAATAAGTTTTTGTGTGTTCGCTGCAAGGAGAAGGAAAAATTATAAGAAGAAAATCTACAAAGAATTGTTAATTTTCTCTCTTAAATCTCTTCTTCGAAAAGCATGTTACTGTGGTTTGATGTTTATCAATTCTTTGTTCTCTGTTTTTCCTGTATTTTCCTAAATGGAAGTTCTTGGCACAAATGTGATCATTCGCTTCCGTTGAGGAAATCAATTCCTTCAGATGGGGAGGATATCCCTGGCCCATCCCCGTTGTCAAACCTGCCCCATTAGTTTTTAAATATATTTTGTTAAAGTTAATTAGTGTTTATTCCTAATTTTATATTCTTTCATGTTAGTATTTTTCTTTTGTATTTCTTTCCTTTGTTGGGTCTGTTGTAACCTATTTATTTTGTAATTCATTGTATTCTATTCAAGTCAATTATTCAATATAATATATACAAAATTCATATGGTATCAAAGCCACAAGTCCTAGGGTTTTATACTTTCCGATCTCTGCATCCATTGACAATTAGTCGATGGAGGCAAATCCACAAAGTCTTGTCGTCGTTACACAGCCCTCTGCCTCTATTACTGATTTTGTTCTGTTTTTAGATATGCATTTGTGGGTCTCTGTTTTTTTTTTCAAATATGTGTTCGTAGGTCTCTGTTTCATTTTCAAATCATTTGTTTGTGGGTTATGTTTCAGATCTCTGTGTAGATCTGTTACCAGGCCAAAAATTCTTTGTGAGTCTCTATTTTCAACCCAAAAGTTATTCGTGGGTTTTGTTTTAGATCTTCTATGAGGATCTTTATTTCCAGCTCAAAAATTTTTTGTGGTCCCTATTTCCAGCCCAGTTATGTTGATTTGATTCAAAAGTTCTCTTTAGTTTCTGTCATTTGTCGTTTCAGCCCGTCACTTCATAAACTCAAGTTGGTCATCACTCTACCACCTTGAGTTTGAGGGATGGTGTTAAAGTTAATTAGTGTATTCCTAATTTTATAATCTTCCATGTTAGTATTTTCCTTTTCCGTTTCTTTCCTTTGTTGGGTTTGTTCGAGTCTATTTATTATGTAATTTATTGTATTCTATTCAAGTAAATTATTCAATATAATATATATACAAATTCAACATGACATATTTTTAAAATATATTATATATTATATAAATTATAAATATATATATATATATATATATATATTAACAAATTATTATTAAATATAAATATTCATATGATTTTTTTTAAAAAAAAAACCTCATGTCAATTTTCTATTTAGTGCTTAATTTTTTTTGAAAAAATATCTTCTTTCACTGTTTTTTCCTTTTCTTTTTTTCTTTTTTTCAATTTCACATGTATTGTTTTTTTTTAATTTTTTTATTTAGTGTTGTAAACCATTTACTTTTTTTTTTTTTAAATACTATTGGTAACAATTTATGTTTACAATCGGGGATGAGTCCTCGTAGGGACCTGATTCCCCAATGAGAATCCCCGTCCCCATCCTCTATTTCAATTGGCAGGGATTGGGGCAGGGATGGGTATGAAGTTCCTCGTCGGTCCTGCCTCGTTGCCAACCCTAATTAGACACTTAAAATCACTAGTTTGAAACCACGTGCTAAATTTTAAAACGTAATTTTATTAAATAGTTGAAATGTGACTTTATTAGATATGATTCAAATGTGAGTTTATAACTATTTTAGAAATTGATATTGTGTATGTCATTGTCAAATGAAGTTGGAATTTTTCTTAATATGAGCTTTATTATATACTAATATTATCATTATTGAAATGCATTTTGGAAAGAGTTATTTATGTCGTTGTACGAAATGGAATAGTAAGACTTTTATAACTCTACAACTTTATTATAGATTCTCGTAGATATCTTTAAAATTTTATAAATGAGAATTCTTTAAAAAATATATATTAATTTCATTTATCAATTATTATTGGTTCATTAAAAATTTTATTAATTTTTGTTTACATTTAAATTTTCATTAGTTCAATATAAATGAATGCTTTGAAAAAATATATTCATTTTATTTATCAATTAATTATAAGATTCAATAAATTATAAAGTTAATTTTAATTATTTTCAACATTTAAAAAATTAGATTGAAAAAGAACCACTTATTTTGTTGTAGGAAATTAAAGAGTTTCTGAACTTTTTGGAATTTTAAATTAAACTTCATGAGATTACTTTTCAATCATGATAAAATAATAAGTCTAAAAACACATTCCAACTAAAACTTTCTATATTCTATCTTTACACCCCTTCATCTATTAACAATTATGAGTATATTTAAATCTTCATTAATTTAAGGGTTGATTACAAATATAGCAAAATAGAAAAAAAGTTTTCTTAGCTCTTTGAAAAAAATTTCTATTTTTTTACTATAATTAAAAAATATTTCTAGCGGTTTTCCCGTTTAAAAGAATTTCTTCCTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTTATTTTGGAAAAACATCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGGTATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCCGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCTTTCCATTTTTAA

mRNA sequence

ATGGAGGTTGATGGAAACTTGTCTGTTGTGAGGTGCATTTGCAGGGCACCTACACATTGGCATTGTTATCTGAAACGTTGGGTAAAGCGGTTTTCCCGTTTAAAAGAATTTCTTCCTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTTATTTTGGAAAAACATCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGGTATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCCGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCTTTCCATTTTTAA

Coding sequence (CDS)

ATGGAGGTTGATGGAAACTTGTCTGTTGTGAGGTGCATTTGCAGGGCACCTACACATTGGCATTGTTATCTGAAACGTTGGGTAAAGCGGTTTTCCCGTTTAAAAGAATTTCTTCCTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTTATTTTGGAAAAACATCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGGTATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCCGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCTTTCCATTTTTAA

Protein sequence

MEVDGNLSVVRCICRAPTHWHCYLKRWVKRFSRLKEFLPATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPFHF

Homology

[Close]

BLAST of Lsi10G001470 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 1.9e-114
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 56  ATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 115

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 116 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 175

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSPG
Sbjct: 176 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPG 235

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 236 NRMIPERIFIQTLIGRVLADDIYMGP 261

[Close]

BLAST of Lsi10G001470 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 4.8e-113
Identity = 201/206 (97.57%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEVWYATSEYL
Sbjct: 56  ATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 115

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 116 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 175

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+SVSP 
Sbjct: 176 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPR 235

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           N M+PERIFIQTLIGRVLADDIYMGP
Sbjct: 236 NGMMPERIFIQTLIGRVLADDIYMGP 261

[Close]

BLAST of Lsi10G001470 vs. ExPASy Swiss-Prot
Match: B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.1e-112
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 52  ATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 111

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFR+TDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 112 RQEMNPNFRVTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 171

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP 
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPK 231

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NR +PERIFIQTLIGRVLADDIYMGP
Sbjct: 232 NRTMPERIFIQTLIGRVLADDIYMGP 257

[Close]

BLAST of Lsi10G001470 vs. ExPASy Swiss-Prot
Match: Q3C1G9 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 1.8e-112
Identity = 200/206 (97.09%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 56  ATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 115

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 116 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 175

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP 
Sbjct: 176 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPR 235

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           N M+PERIFIQTLIGRVLADDIYMGP
Sbjct: 236 NGMMPERIFIQTLIGRVLADDIYMGP 261

[Close]

BLAST of Lsi10G001470 vs. ExPASy Swiss-Prot
Match: P38550 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum OX=4097 GN=rpoC2 PE=3 SV=2)

HSP 1 Score: 406.8 bits (1044), Expect = 1.8e-112
Identity = 200/206 (97.09%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 56  ATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 115

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 116 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 175

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP 
Sbjct: 176 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPR 235

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           N M+PERIFIQTLIGRVLADDIYMGP
Sbjct: 236 NGMMPERIFIQTLIGRVLADDIYMGP 261

[Close]

BLAST of Lsi10G001470 vs. ExPASy TrEMBL
Match: A0A2I6C070 (DNA-directed RNA polymerase subunit beta'' OS=Lagenaria siceraria OX=3668 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.2e-113
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL
Sbjct: 56  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 115

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 116 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 175

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG
Sbjct: 176 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 235

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 236 NRMIPERIFIQTLIGRVLADDIYMGP 261

[Close]

BLAST of Lsi10G001470 vs. ExPASy TrEMBL
Match: A0A7G9IT27 (DNA-directed RNA polymerase subunit beta'' OS=Lagenaria siceraria var. microcarpa OX=2726058 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.2e-113
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL
Sbjct: 56  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 115

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 116 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 175

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG
Sbjct: 176 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 235

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 236 NRMIPERIFIQTLIGRVLADDIYMGP 261

[Close]

BLAST of Lsi10G001470 vs. ExPASy TrEMBL
Match: A0A6H0ERC0 (DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes tubiflora OX=1144424 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.8e-113
Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 52  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 111

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 112 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 171

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPG
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPG 231

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 232 NRMIPERIFIQTLIGRVLADDIYMGP 257

[Close]

BLAST of Lsi10G001470 vs. ExPASy TrEMBL
Match: A0A1P8LFL6 (DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 56  ATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 115

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 116 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 175

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG
Sbjct: 176 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 235

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 236 NRMIPERIFIQTLIGRVLADDIYMGP 261

[Close]

BLAST of Lsi10G001470 vs. ExPASy TrEMBL
Match: A0A6H0EPT4 (DNA-directed RNA polymerase subunit beta'' OS=Luffa aegyptiaca OX=3670 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 52  ATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 111

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 112 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 171

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 231

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 232 NRMIPERIFIQTLIGRVLADDIYMGP 257

[Close]

BLAST of Lsi10G001470 vs. NCBI nr
Match: YP_009456136.1 (RNA polymerase beta'' subunit [Lagenaria siceraria] >AUJ21902.1 RNA polymerase beta'' subunit [Lagenaria siceraria] >QNM38521.1 RNA polymerase beta'' subunit [Lagenaria siceraria var. microcarpa])

HSP 1 Score: 418.3 bits (1074), Expect = 4.6e-113
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL
Sbjct: 56  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 115

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 116 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 175

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG
Sbjct: 176 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 235

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 236 NRMIPERIFIQTLIGRVLADDIYMGP 261

[Close]

BLAST of Lsi10G001470 vs. NCBI nr
Match: YP_009752486.1 (RNA polymerase beta'' subunit [Trichosanthes tubiflora] >QIT04882.1 RNA polymerase beta'' subunit [Trichosanthes tubiflora])

HSP 1 Score: 417.5 bits (1072), Expect = 7.8e-113
Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 52  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 111

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 112 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 171

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPG
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPG 231

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 232 NRMIPERIFIQTLIGRVLADDIYMGP 257

[Close]

BLAST of Lsi10G001470 vs. NCBI nr
Match: YP_009751896.1 (RNA polymerase beta'' subunit [Cyclanthera pedata] >QIT04714.1 RNA polymerase beta'' subunit [Cyclanthera pedata])

HSP 1 Score: 415.6 bits (1067), Expect = 3.0e-112
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 52  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 111

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 112 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 171

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 231

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIY GP
Sbjct: 232 NRMIPERIFIQTLIGRVLADDIYTGP 257

[Close]

BLAST of Lsi10G001470 vs. NCBI nr
Match: YP_009560825.1 (RpoC2 [Trichosanthes kirilowii] >QAB33181.1 RpoC2 [Trichosanthes kirilowii])

HSP 1 Score: 415.6 bits (1067), Expect = 3.0e-112
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 52  ATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 111

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 112 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 171

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 231

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 232 NRMIPERIFIQTLIGRVLADDIYMGP 257

[Close]

BLAST of Lsi10G001470 vs. NCBI nr
Match: AXU40565.1 (RNA polymerase beta'' subunit [Gomphogyne cissiformis var. cissiformis])

HSP 1 Score: 415.6 bits (1067), Expect = 3.0e-112
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 56  ATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 115

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 116 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 175

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG
Sbjct: 176 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPG 235

Query: 220 NRMIPERIFIQTLIGRVLADDIYMGP 246
           NRMIPERIFIQTLIGRVLADDIYMGP
Sbjct: 236 NRMIPERIFIQTLIGRVLADDIYMGP 261

[Close]

BLAST of Lsi10G001470 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 397.9 bits (1021), Expect = 6.0e-111
Identity = 198/207 (95.65%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 40  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYL 99
           ATSISLGIDDLLTIPSKGWLVQDAEQQS+ILEKHHHYGNVHAVEKLRQSIE+WYATSEYL
Sbjct: 52  ATSISLGIDDLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYL 111

Query: 100 RQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 159
           RQEMNPNFRMTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE
Sbjct: 112 RQEMNPNFRMTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLRE 171

Query: 160 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP- 219
           GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP 
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPR 231

Query: 220 -GNRMIPERIFIQTLIGRVLADDIYMG 245
             NRM+ ERIFIQTLIGRVLADDIY+G
Sbjct: 232 NKNRMMSERIFIQTLIGRVLADDIYIG 258

[Close]

BLAST of Lsi10G001470 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-06
Identity = 23/60 (38.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 153 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 212
           ++++   GL+  E+     G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+    GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 876

[Close]

BLAST of Lsi10G001470 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 48.9 bits (115), Expect = 6.8e-06
Identity = 22/63 (34.92%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 153 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 212
           + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 835 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 894

Query: 213 GIS 216
             S
Sbjct: 895 NAS 895

[Close]

BLAST of Lsi10G001470 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 48.9 bits (115), Expect = 6.8e-06
Identity = 22/63 (34.92%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 153 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 212
           + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 852 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 911

Query: 213 GIS 216
             S
Sbjct: 912 NAS 912

[Close]

BLAST of Lsi10G001470 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-05
Identity = 38/119 (31.93%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 114  NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 173
            N + +M+ SGA+G   N  Q+   +G + L      +M+    LP              I
Sbjct: 936  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995

Query: 174  QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 213
                  GL   EY   C   R+G+VDTAV+TS +GYL R L++ ++ + V   DC T+R
Sbjct: 996  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKV-NYDC-TVR 1052

The following BLAST results are available for this feature:

BLAST of Lsi10G001470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	1.9e-114	98.54	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
Q49L08	4.8e-113	97.57	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
B1A925	1.1e-112	97.09	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=...	[more]
Q3C1G9	1.8e-112	97.09	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rp...	[more]
P38550	1.8e-112	97.09	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum OX=4097 GN=rpoC2...	[more]

BLAST of Lsi10G001470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I6C070	2.2e-113	100.00	DNA-directed RNA polymerase subunit beta'' OS=Lagenaria siceraria OX=3668 GN=rpo...	[more]
A0A7G9IT27	2.2e-113	100.00	DNA-directed RNA polymerase subunit beta'' OS=Lagenaria siceraria var. microcarp...	[more]
A0A6H0ERC0	3.8e-113	99.03	DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes tubiflora OX=1144424...	[more]
A0A1P8LFL6	1.4e-112	99.03	DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 S...	[more]
A0A6H0EPT4	1.4e-112	99.03	DNA-directed RNA polymerase subunit beta'' OS=Luffa aegyptiaca OX=3670 GN=rpoC2 ...	[more]

BLAST of Lsi10G001470 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009456136.1	4.6e-113	100.00	RNA polymerase beta'' subunit [Lagenaria siceraria] >AUJ21902.1 RNA polymerase b...	[more]
YP_009752486.1	7.8e-113	99.03	RNA polymerase beta'' subunit [Trichosanthes tubiflora] >QIT04882.1 RNA polymera...	[more]
YP_009751896.1	3.0e-112	99.03	RNA polymerase beta'' subunit [Cyclanthera pedata] >QIT04714.1 RNA polymerase be...	[more]
YP_009560825.1	3.0e-112	99.03	RpoC2 [Trichosanthes kirilowii] >QAB33181.1 RpoC2 [Trichosanthes kirilowii]	[more]
AXU40565.1	3.0e-112	99.03	RNA polymerase beta'' subunit [Gomphogyne cissiformis var. cissiformis]	[more]

BLAST of Lsi10G001470 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	6.0e-111	95.65	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	1.4e-06	38.33	RNA polymerase II large subunit	[more]
AT5G60040.1	6.8e-06	34.92	nuclear RNA polymerase C1	[more]
AT5G60040.2	6.8e-06	34.92	nuclear RNA polymerase C1	[more]
AT3G57660.1	1.5e-05	31.93	nuclear RNA polymerase A1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 86..145 e-value: 7.9E-11 score: 41.9
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 44..184 e-value: 8.4E-48 score: 164.0
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 160..217 e-value: 6.8E-20 score: 71.6
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 40..245
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 40..245
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 36..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G001470.1	Lsi10G001470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding