Lsi10G000560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G000560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	glucan endo-1,3-beta-glucosidase 1
Location	chr10: 952969 .. 953792 (+)
RNA-Seq Expression	Lsi10G000560
Synteny	Lsi10G000560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGAAATCCCATAAGTTGAAACATTATCACATGTGCTAGCTCATCAACAGATGCGTTTAAGAAGGCACTATTTGTGGCCATTATACTTTCTTACTTAGATAGATCTCTGTCTTCTTCGCTTTTTCTCTGCCATGGTTGCTCTGTTGACTAAAACACTGCTCATTCTGCTGTTACTCTCAACAATTCACCATAATGCAGGTAACAACCAATGCCCATTTGAAATTTCATGTCAATAAATACTTTAGTTCCAAATAATCAATTTTTCTTTTTACATTGAATGGATTGGATGGTGCATCAGAGAAGTTTGTTTCCAGATTTATGTGAATATGTCCACCAACTGTTTGTTAAAATGTCTAGGTGGGGAGTTTGAGCAATGGTGTGTAGCAGATGAGCAGACCCCAGACGATGAATTACAAATGGCTTTGGATTGGGCATGTGGAATGGGAGGTGCTAACTGCAGCAAGATCCAAACAAACCAGCCTTGTTTTAACCCAAATACAGTGAAAGACCATGCTTCATTTGCCTTCAACACCTACTTTCAGAGCTTCAAGCATCAAGGTGGATCCTGCTTCTTCAAAGGAGCTGCCATCATTACAGAGCTTGATCCTAGTAAGCCACATTTTTACTGTCTACCATATCTAATTTATGATTCTCTTTCTTTCTGGTAAATTGCAAAAGTTACCCAACTGCAGTTTCTTTTAGATTATTCTATCTTGAAAATGCTCTAAAGGGAGTTGCCATCATTGCAATGCTTTGTCTTTTTACATTATTGAGACAATACTTTGAAACCCATGTGGAAGCTATGAATCAGCATGTTGTGTGA

mRNA sequence

AATGAAATCCCATAAGTTGAAACATTATCACATGTGCTAGCTCATCAACAGATGCGTTTAAGAAGGCACTATTTGTGGCCATTATACTTTCTTACTTAGATAGATCTCTGTCTTCTTCGCTTTTTCTCTGCCATGGTTGCTCTGTTGACTAAAACACTGCTCATTCTGCTGTTACTCTCAACAATTCACCATAATGCAGGTGGGGAGTTTGAGCAATGGTGTGTAGCAGATGAGCAGACCCCAGACGATGAATTACAAATGGCTTTGGATTGGGCATGTGGAATGGGAGGTGCTAACTGCAGCAAGATCCAAACAAACCAGCCTTGTTTTAACCCAAATACAGTGAAAGACCATGCTTCATTTGCCTTCAACACCTACTTTCAGAGCTTCAAGCATCAAGGTGGATCCTGCTTCTTCAAAGGAGCTGCCATCATTACAGAGCTTGATCCTATTTCTTTTAGATTATTCTATCTTGAAAATGCTCTAAAGGGAGTTGCCATCATTGCAATGCTTTGTCTTTTTACATTATTGAGACAATACTTTGAAACCCATGTGGAAGCTATGAATCAGCATGTTGTGTGA

Coding sequence (CDS)

ATGGTTGCTCTGTTGACTAAAACACTGCTCATTCTGCTGTTACTCTCAACAATTCACCATAATGCAGGTGGGGAGTTTGAGCAATGGTGTGTAGCAGATGAGCAGACCCCAGACGATGAATTACAAATGGCTTTGGATTGGGCATGTGGAATGGGAGGTGCTAACTGCAGCAAGATCCAAACAAACCAGCCTTGTTTTAACCCAAATACAGTGAAAGACCATGCTTCATTTGCCTTCAACACCTACTTTCAGAGCTTCAAGCATCAAGGTGGATCCTGCTTCTTCAAAGGAGCTGCCATCATTACAGAGCTTGATCCTATTTCTTTTAGATTATTCTATCTTGAAAATGCTCTAAAGGGAGTTGCCATCATTGCAATGCTTTGTCTTTTTACATTATTGAGACAATACTTTGAAACCCATGTGGAAGCTATGAATCAGCATGTTGTGTGA

Protein sequence

MVALLTKTLLILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDPISFRLFYLENALKGVAIIAMLCLFTLLRQYFETHVEAMNQHVV

Homology

[Close]

BLAST of Lsi10G000560 vs. ExPASy Swiss-Prot
Match: Q8VYE5 (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana OX=3702 GN=At4g29360 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-21
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 17  TIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNPNTVKDHAS 76
           TI    GG  ++WC+A  Q    ELQ ALDWACG G  +CS +Q +QPCF P+TV  HAS
Sbjct: 379 TIGGGGGGGTKKWCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHAS 438

Query: 77  FAFNTYFQSFKHQGGSCFFKGAAIITELDPISFRLFYL 115
           +AFNTY+Q        C F GA++  + DP      Y+
Sbjct: 439 YAFNTYYQQSGASSIDCSFNGASVEVDKDPSYGNCLYM 476

[Close]

BLAST of Lsi10G000560 vs. ExPASy Swiss-Prot
Match: Q94CD8 (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.3e-20
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 29  WCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNPNTVKDHASFAFNTYFQSFKH 88
           +CVA     DD+L   L+WACG G ANC+ IQ  QPC+ PN VK HASFAFN Y+Q  K 
Sbjct: 362 FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKS 421

Query: 89  QGGSCFFKGAAIITELDP 107
            GG+C F G AI T  DP
Sbjct: 422 AGGTCDFDGTAITTTRDP 439

[Close]

BLAST of Lsi10G000560 vs. ExPASy Swiss-Prot
Match: O65399 (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 18  IHHNAGGEF-------EQWCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNPNT 77
           +H +  G F       + +C+A +      LQ ALDWACG G +NCS+IQ  + C+ PN 
Sbjct: 363 LHVSGSGTFLANDTTNQTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNN 422

Query: 78  VKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
           VK HASFAFN+Y+Q      GSC FKG A+IT  DP
Sbjct: 423 VKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDP 458

[Close]

BLAST of Lsi10G000560 vs. ExPASy Swiss-Prot
Match: Q9FJU9 (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-18
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 21  NAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNPNTVKDHASFAFN 80
           N+ G    WC+A  +  + +L+ ALDWACG G  +C+ IQ +QPCF P+T+  HASF FN
Sbjct: 361 NSSGSSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFN 420

Query: 81  TYFQSFKHQGGSCFFKGAAIITELDPISFRLFYL 115
           +YFQ  +    +C F GA +    DP   +  Y+
Sbjct: 421 SYFQQNRATDVACSFGGAGVKVNKDPSYDKCIYI 454

[Close]

BLAST of Lsi10G000560 vs. ExPASy Swiss-Prot
Match: Q9FZ86 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-16
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 9   LLILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNP 68
           +L+++LL+   H++G     WCV  E   +  LQ  LD+ACG  GA+C  I    PCFNP
Sbjct: 5   VLVMILLAMAGHSSG----TWCVCKEGLSEAMLQKTLDYACG-AGADCGPIHQTGPCFNP 64

Query: 69  NTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
           NTVK H S+A N++FQ      G+C F G A  +  DP
Sbjct: 65  NTVKSHCSYAVNSFFQKKGQSLGTCDFAGTATFSASDP 97

[Close]

BLAST of Lsi10G000560 vs. ExPASy TrEMBL
Match: A0A0A0KDX6 (X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G110840 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.1e-51
Identity = 99/106 (93.40%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MVALLTKTLLILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQ 60
           MVALLTKTLL+LLLLSTIH N GGEFEQWCVADEQTPDDELQMALDWACG GGANCS IQ
Sbjct: 1   MVALLTKTLLVLLLLSTIHQNTGGEFEQWCVADEQTPDDELQMALDWACGRGGANCSSIQ 60

Query: 61  TNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
            NQPCFNPNTVKDHASFAFN YFQSFKHQGGSCFFKGAAIITELDP
Sbjct: 61  PNQPCFNPNTVKDHASFAFNNYFQSFKHQGGSCFFKGAAIITELDP 106

[Close]

BLAST of Lsi10G000560 vs. ExPASy TrEMBL
Match: A0A5A7TVX0 (Glucan endo-1,3-beta-glucosidase 12 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00840 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.2e-51
Identity = 99/106 (93.40%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MVALLTKTLLILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQ 60
           MVALLTKTLLILLLLSTIH N GGEFEQWCVADEQ PDDELQMALDWACG GGANCS IQ
Sbjct: 1   MVALLTKTLLILLLLSTIHQNTGGEFEQWCVADEQIPDDELQMALDWACGKGGANCSSIQ 60

Query: 61  TNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
            NQPCFNPNTVKDHASFAFN YFQSFKHQGGSCFFKGAAIITELDP
Sbjct: 61  PNQPCFNPNTVKDHASFAFNNYFQSFKHQGGSCFFKGAAIITELDP 106

[Close]

BLAST of Lsi10G000560 vs. ExPASy TrEMBL
Match: A0A1S3CKX6 (glucan endo-1,3-beta-glucosidase 12 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502123 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.2e-51
Identity = 99/106 (93.40%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MVALLTKTLLILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQ 60
           MVALLTKTLLILLLLSTIH N GGEFEQWCVADEQ PDDELQMALDWACG GGANCS IQ
Sbjct: 1   MVALLTKTLLILLLLSTIHQNTGGEFEQWCVADEQIPDDELQMALDWACGKGGANCSSIQ 60

Query: 61  TNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
            NQPCFNPNTVKDHASFAFN YFQSFKHQGGSCFFKGAAIITELDP
Sbjct: 61  PNQPCFNPNTVKDHASFAFNNYFQSFKHQGGSCFFKGAAIITELDP 106

[Close]

BLAST of Lsi10G000560 vs. ExPASy TrEMBL
Match: A0A6J1I7Q3 (glucan endo-1,3-beta-glucosidase 12 OS=Cucurbita maxima OX=3661 GN=LOC111469899 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.7e-47
Identity = 94/108 (87.04%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 1   MVALLTKTL--LILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSK 60
           M AL T TL  L LLLLSTI H AGGEFEQWC+ADEQTPDDELQMALDWACG GG NCSK
Sbjct: 1   MAALWTGTLLTLALLLLSTIQHKAGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSK 60

Query: 61  IQTNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
           IQ NQPCFNPNTVKDHASFAFN YFQ+FKHQGGSCFFKGAAIITELDP
Sbjct: 61  IQPNQPCFNPNTVKDHASFAFNAYFQNFKHQGGSCFFKGAAIITELDP 108

[Close]

BLAST of Lsi10G000560 vs. ExPASy TrEMBL
Match: A0A6J1G6V9 (glucan endo-1,3-beta-glucosidase 12-like OS=Cucurbita moschata OX=3662 GN=LOC111451375 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.7e-47
Identity = 94/108 (87.04%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 1   MVALLTKTL--LILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSK 60
           M AL T TL  L LLLLSTI H AGGEFEQWC+ADEQTPDDELQMALDWACG GG NCSK
Sbjct: 1   MAALWTGTLLTLALLLLSTIQHKAGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSK 60

Query: 61  IQTNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
           IQ NQPCFNPNTVKDHASFAFN YFQ+FKHQGGSCFFKGAAIITELDP
Sbjct: 61  IQPNQPCFNPNTVKDHASFAFNAYFQNFKHQGGSCFFKGAAIITELDP 108

[Close]

BLAST of Lsi10G000560 vs. NCBI nr
Match: XP_004140010.1 (glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 2.3e-51
Identity = 99/106 (93.40%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MVALLTKTLLILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQ 60
           MVALLTKTLL+LLLLSTIH N GGEFEQWCVADEQTPDDELQMALDWACG GGANCS IQ
Sbjct: 1   MVALLTKTLLVLLLLSTIHQNTGGEFEQWCVADEQTPDDELQMALDWACGRGGANCSSIQ 60

Query: 61  TNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
            NQPCFNPNTVKDHASFAFN YFQSFKHQGGSCFFKGAAIITELDP
Sbjct: 61  PNQPCFNPNTVKDHASFAFNNYFQSFKHQGGSCFFKGAAIITELDP 106

[Close]

BLAST of Lsi10G000560 vs. NCBI nr
Match: KAA0046037.1 (glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis melo var. makuwa] >TYK11917.1 glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 210.7 bits (535), Expect = 8.7e-51
Identity = 99/106 (93.40%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MVALLTKTLLILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQ 60
           MVALLTKTLLILLLLSTIH N GGEFEQWCVADEQ PDDELQMALDWACG GGANCS IQ
Sbjct: 1   MVALLTKTLLILLLLSTIHQNTGGEFEQWCVADEQIPDDELQMALDWACGKGGANCSSIQ 60

Query: 61  TNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
            NQPCFNPNTVKDHASFAFN YFQSFKHQGGSCFFKGAAIITELDP
Sbjct: 61  PNQPCFNPNTVKDHASFAFNNYFQSFKHQGGSCFFKGAAIITELDP 106

[Close]

BLAST of Lsi10G000560 vs. NCBI nr
Match: XP_008464180.1 (PREDICTED: glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 8.7e-51
Identity = 99/106 (93.40%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MVALLTKTLLILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQ 60
           MVALLTKTLLILLLLSTIH N GGEFEQWCVADEQ PDDELQMALDWACG GGANCS IQ
Sbjct: 1   MVALLTKTLLILLLLSTIHQNTGGEFEQWCVADEQIPDDELQMALDWACGKGGANCSSIQ 60

Query: 61  TNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
            NQPCFNPNTVKDHASFAFN YFQSFKHQGGSCFFKGAAIITELDP
Sbjct: 61  PNQPCFNPNTVKDHASFAFNNYFQSFKHQGGSCFFKGAAIITELDP 106

[Close]

BLAST of Lsi10G000560 vs. NCBI nr
Match: XP_038902204.1 (glucan endo-1,3-beta-glucosidase 12-like [Benincasa hispida])

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-49
Identity = 96/106 (90.57%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MVALLTKTLLILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQ 60
           MVALL+KTLLILLLLSTIH N GGEFEQWC+ADEQ PDDELQ ALDWACG GGANCSKIQ
Sbjct: 1   MVALLSKTLLILLLLSTIHQNTGGEFEQWCIADEQIPDDELQTALDWACGNGGANCSKIQ 60

Query: 61  TNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
            +QPCF+PNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP
Sbjct: 61  PDQPCFDPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 106

[Close]

BLAST of Lsi10G000560 vs. NCBI nr
Match: XP_022947538.1 (glucan endo-1,3-beta-glucosidase 12-like [Cucurbita moschata] >XP_022971134.1 glucan endo-1,3-beta-glucosidase 12 [Cucurbita maxima] >XP_023532863.1 glucan endo-1,3-beta-glucosidase 12-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 7.6e-47
Identity = 94/108 (87.04%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 1   MVALLTKTL--LILLLLSTIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSK 60
           M AL T TL  L LLLLSTI H AGGEFEQWC+ADEQTPDDELQMALDWACG GG NCSK
Sbjct: 1   MAALWTGTLLTLALLLLSTIQHKAGGEFEQWCIADEQTPDDELQMALDWACGRGGGNCSK 60

Query: 61  IQTNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
           IQ NQPCFNPNTVKDHASFAFN YFQ+FKHQGGSCFFKGAAIITELDP
Sbjct: 61  IQPNQPCFNPNTVKDHASFAFNAYFQNFKHQGGSCFFKGAAIITELDP 108

[Close]

BLAST of Lsi10G000560 vs. TAIR 10
Match: AT5G35740.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-37
Identity = 71/108 (65.74%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MVALLTKTLLILLLLS-TIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKI 60
           M   L + LL LL+++ T+   +  E EQWC+ADEQTPDDELQ ALDWACG GGA+CSK+
Sbjct: 1   MSTFLIRILLPLLIIAMTLPRRSEAESEQWCIADEQTPDDELQAALDWACGKGGADCSKM 60

Query: 61  -QTNQPCFNPNTVKDHASFAFNTYFQSFKHQGGSCFFKGAAIITELDP 107
            Q NQPCF PNT++DHASFAFN+Y+Q++K++GGSC+FKGAA+ITELDP
Sbjct: 61  QQENQPCFLPNTIRDHASFAFNSYYQTYKNKGGSCYFKGAAMITELDP 108

[Close]

BLAST of Lsi10G000560 vs. TAIR 10
Match: AT2G04910.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-28
Identity = 54/85 (63.53%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 22  AGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNPNTVKDHASFAFNT 81
           A  EF QWCVAD Q PD+ +Q A+DWAC  GGA+CS IQ NQPCF PNTVKDHAS  FN 
Sbjct: 8   AKAEFGQWCVADGQIPDNVIQAAVDWACQTGGADCSTIQPNQPCFLPNTVKDHASVVFNN 67

Query: 82  YFQSFKHQGGSCFFKGAAIITELDP 107
           Y+Q +K  GGSC F   A IT+ DP
Sbjct: 68  YYQRYKRNGGSCNFNSTAFITQTDP 92

[Close]

BLAST of Lsi10G000560 vs. TAIR 10
Match: AT2G04910.2 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-28
Identity = 54/85 (63.53%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 22  AGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNPNTVKDHASFAFNT 81
           A  EF QWCVAD Q PD+ +Q A+DWAC  GGA+CS IQ NQPCF PNTVKDHAS  FN 
Sbjct: 8   AKAEFGQWCVADGQIPDNVIQAAVDWACQTGGADCSTIQPNQPCFLPNTVKDHASVVFNN 67

Query: 82  YFQSFKHQGGSCFFKGAAIITELDP 107
           Y+Q +K  GGSC F   A IT+ DP
Sbjct: 68  YYQRYKRNGGSCNFNSTAFITQTDP 92

[Close]

BLAST of Lsi10G000560 vs. TAIR 10
Match: AT4G29360.2 (O-Glycosyl hydrolases family 17 protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-22
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 17  TIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNPNTVKDHAS 76
           TI    GG  ++WC+A  Q    ELQ ALDWACG G  +CS +Q +QPCF P+TV  HAS
Sbjct: 379 TIGGGGGGGTKKWCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHAS 438

Query: 77  FAFNTYFQSFKHQGGSCFFKGAAIITELDPISFRLFY 114
           +AFNTY+Q        C F GA++  + DP  +   Y
Sbjct: 439 YAFNTYYQQSGASSIDCSFNGASVEVDKDPSKYLYTY 475

[Close]

BLAST of Lsi10G000560 vs. TAIR 10
Match: AT4G29360.1 (O-Glycosyl hydrolases family 17 protein )

HSP 1 Score: 101.7 bits (252), Expect = 5.3e-22
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 17  TIHHNAGGEFEQWCVADEQTPDDELQMALDWACGMGGANCSKIQTNQPCFNPNTVKDHAS 76
           TI    GG  ++WC+A  Q    ELQ ALDWACG G  +CS +Q +QPCF P+TV  HAS
Sbjct: 379 TIGGGGGGGTKKWCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHAS 438

Query: 77  FAFNTYFQSFKHQGGSCFFKGAAIITELDPISFRLFYL 115
           +AFNTY+Q        C F GA++  + DP      Y+
Sbjct: 439 YAFNTYYQQSGASSIDCSFNGASVEVDKDPSYGNCLYM 476

The following BLAST results are available for this feature:

BLAST of Lsi10G000560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYE5	7.5e-21	45.92	Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana OX=3702 GN=At4g29360...	[more]
Q94CD8	6.3e-20	56.41	Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 ...	[more]
O65399	1.8e-19	46.88	Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 ...	[more]
Q9FJU9	2.0e-18	41.49	Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590...	[more]
Q9FZ86	9.5e-16	42.86	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3...	[more]

BLAST of Lsi10G000560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDX6	1.1e-51	93.40	X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G110840 PE=4 SV=...	[more]
A0A5A7TVX0	4.2e-51	93.40	Glucan endo-1,3-beta-glucosidase 12 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3CKX6	4.2e-51	93.40	glucan endo-1,3-beta-glucosidase 12 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1I7Q3	3.7e-47	87.04	glucan endo-1,3-beta-glucosidase 12 OS=Cucurbita maxima OX=3661 GN=LOC111469899 ...	[more]
A0A6J1G6V9	3.7e-47	87.04	glucan endo-1,3-beta-glucosidase 12-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Lsi10G000560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140010.1	2.3e-51	93.40	glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis sativus]	[more]
KAA0046037.1	8.7e-51	93.40	glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis melo var. makuwa] >TYK11...	[more]
XP_008464180.1	8.7e-51	93.40	PREDICTED: glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis melo]	[more]
XP_038902204.1	2.1e-49	90.57	glucan endo-1,3-beta-glucosidase 12-like [Benincasa hispida]	[more]
XP_022947538.1	7.6e-47	87.04	glucan endo-1,3-beta-glucosidase 12-like [Cucurbita moschata] >XP_022971134.1 gl...	[more]

BLAST of Lsi10G000560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35740.1	1.2e-37	65.74	Carbohydrate-binding X8 domain superfamily protein	[more]
AT2G04910.1	1.0e-28	63.53	Carbohydrate-binding X8 domain superfamily protein	[more]
AT2G04910.2	1.0e-28	63.53	Carbohydrate-binding X8 domain superfamily protein	[more]
AT4G29360.2	2.4e-22	46.39	O-Glycosyl hydrolases family 17 protein	[more]
AT4G29360.1	5.3e-22	45.92	O-Glycosyl hydrolases family 17 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012946	X8 domain	SMART	SM00768	X8_cls	coord: 28..130 e-value: 1.4E-38 score: 144.2
IPR012946	X8 domain	PFAM	PF07983	X8	coord: 28..99 e-value: 1.7E-21 score: 76.7
None	No IPR available	GENE3D	1.20.58.1040		coord: 25..109 e-value: 4.3E-10 score: 41.8
None	No IPR available	PANTHER	PTHR31044:SF35	CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN	coord: 5..107
IPR044788	Carbohydrate-binding X8 domain-containing protein, plant	PANTHER	PTHR31044	BETA-1,3 GLUCANASE	coord: 5..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G000560.1	Lsi10G000560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0016787	hydrolase activity