Lsi10G000510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G000510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein SNE
Location	chr10: 801765 .. 802223 (+)
RNA-Seq Expression	Lsi10G000510
Synteny	Lsi10G000510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAGAATCACATACCAGAACCGAATGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCGTCGCTCGGCGTCGCAACCTGCGTCTGCCGGCTCTGGTGCACAATCGCTCGAAGTGAATCGGTGTGGGAACAGGTTTGCTTCCGTCACGTAACATCGCCGCTACCGTCGTCGGTGAAATCGGTGGTGGCCGCCTTGGGAGGGTACAAGCGGTTGTACATGGTTAGCATACGGCCGGTACTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTTCAACTTTCACTTTCTCTGTTTTGTGTAGATTATTACGAGCGACTCACTGGGAGTGGGAGAATCAGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTCTGCAACACCGTCAACGTCTGA

mRNA sequence

ATGCAGAAGAATCACATACCAGAACCGAATGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCGTCGCTCGGCGTCGCAACCTGCGTCTGCCGGCTCTGGTGCACAATCGCTCGAAGTGAATCGGTGTGGGAACAGGTTTGCTTCCGTCACGTAACATCGCCGCTACCGTCGTCGGTGAAATCGGTGGTGGCCGCCTTGGGAGGGTACAAGCGGTTGTACATGGTTAGCATACGGCCGGTACTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTTCAACTTTCACTTTCTCTGTTTTGTGTAGATTATTACGAGCGACTCACTGGGAGTGGGAGAATCAGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTCTGCAACACCGTCAACGTCTGA

Coding sequence (CDS)

ATGCAGAAGAATCACATACCAGAACCGAATGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCGTCGCTCGGCGTCGCAACCTGCGTCTGCCGGCTCTGGTGCACAATCGCTCGAAGTGAATCGGTGTGGGAACAGGTTTGCTTCCGTCACGTAACATCGCCGCTACCGTCGTCGGTGAAATCGGTGGTGGCCGCCTTGGGAGGGTACAAGCGGTTGTACATGGTTAGCATACGGCCGGTACTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTTCAACTTTCACTTTCTCTGTTTTGTGTAGATTATTACGAGCGACTCACTGGGAGTGGGAGAATCAGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTCTGCAACACCGTCAACGTCTGA

Protein sequence

MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

Homology

[Close]

BLAST of Lsi10G000510 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-35
Identity = 83/154 (53.90%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 6   IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQ 65
           + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE+
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 66  VCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLS 125
           +CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R     L + +WT+D++QLSLS
Sbjct: 70  LCFRQV-SPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWTRDQLQLSLS 129

Query: 126 LFCVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           L+CV YYERL   G   GDA   SL+FL   VNV
Sbjct: 130 LYCVHYYERLY-VGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of Lsi10G000510 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 42/117 (35.90%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 21  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKSV 80
           NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+     + ++SV
Sbjct: 34  NLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSV 93

Query: 81  VAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR 134
           V ALGG++RL+ + + P LS+       R  + +DE++L+LSL  + YYE+++ + R
Sbjct: 94  VLALGGFRRLHSLYLWP-LSKPN----PRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Lsi10G000510 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 23  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSP--LPSSVKSVVAAL 82
           D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       +++VV +L
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSL 138

Query: 83  GGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR 140
           GG++RL+ V IRP       V  + G      R+  +D+VQLSLSLF + +++ +    +
Sbjct: 139 GGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRL-GRDQVQLSLSLFSIGFFQNMPCPKK 198

[Close]

BLAST of Lsi10G000510 vs. ExPASy TrEMBL
Match: A0A0A0KAT5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.3e-79
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRI G+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. ExPASy TrEMBL
Match: A0A5A7V4V6 (F-box protein SNE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001340 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.4e-78
Identity = 147/152 (96.71%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRI GDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. ExPASy TrEMBL
Match: A0A1S4E4K7 (F-box protein SNE OS=Cucumis melo OX=3656 GN=LOC103502114 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 146/152 (96.05%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRI GDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. ExPASy TrEMBL
Match: A0A6J1I140 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111469889 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE V
Sbjct: 1   MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS++VRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGR+SGDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRLSGDASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. ExPASy TrEMBL
Match: A0A6J1G764 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111451371 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE V
Sbjct: 1   MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS++VRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGR+SGDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRLSGDASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. NCBI nr
Match: XP_038902594.1 (F-box protein SNE [Benincasa hispida])

HSP 1 Score: 307.8 bits (787), Expect = 5.4e-80
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRI GDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. NCBI nr
Match: XP_004140002.1 (F-box protein SNE [Cucumis sativus] >XP_031743985.1 F-box protein SNE [Cucumis sativus] >KGN46603.1 hypothetical protein Csa_005230 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-78
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRI G+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. NCBI nr
Match: KAA0060791.1 (F-box protein SNE [Cucumis melo var. makuwa] >TYK11951.1 F-box protein SNE [Cucumis melo var. makuwa])

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 147/152 (96.71%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRI GDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. NCBI nr
Match: XP_016903159.1 (PREDICTED: F-box protein SNE [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 4.2e-77
Identity = 146/152 (96.05%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRI GDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. NCBI nr
Match: XP_022947535.1 (F-box protein SNE-like [Cucurbita moschata] >XP_022971122.1 F-box protein SNE-like [Cucurbita maxima] >XP_023534232.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo] >KAG6604912.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026993.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.7 bits (761), Expect = 5.5e-77
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE V
Sbjct: 1   MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHV 60

Query: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS++VRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGR+SGDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRLSGDASALSLMFLCNTVNV 152

[Close]

BLAST of Lsi10G000510 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-36
Identity = 83/154 (53.90%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 6   IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQ 65
           + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE+
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 66  VCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLS 125
           +CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R     L + +WT+D++QLSLS
Sbjct: 70  LCFRQV-SPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWTRDQLQLSLS 129

Query: 126 LFCVDYYERLTGSGRISGDASALSLMFLCNTVNV 153
           L+CV YYERL   G   GDA   SL+FL   VNV
Sbjct: 130 LYCVHYYERLY-VGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of Lsi10G000510 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-13
Identity = 42/117 (35.90%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 21  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKSV 80
           NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+     + ++SV
Sbjct: 34  NLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSV 93

Query: 81  VAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR 134
           V ALGG++RL+ + + P LS+       R  + +DE++L+LSL  + YYE+++ + R
Sbjct: 94  VLALGGFRRLHSLYLWP-LSKPN----PRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

The following BLAST results are available for this feature:

BLAST of Lsi10G000510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	2.4e-35	53.90	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q9STX3	1.7e-12	35.90	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	1.6e-10	32.54	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]

BLAST of Lsi10G000510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAT5	8.3e-79	97.37	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 ...	[more]
A0A5A7V4V6	5.4e-78	96.71	F-box protein SNE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00...	[more]
A0A1S4E4K7	2.1e-77	96.05	F-box protein SNE OS=Cucumis melo OX=3656 GN=LOC103502114 PE=4 SV=1	[more]
A0A6J1I140	2.7e-77	95.39	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111469889 PE=4 SV=1	[more]
A0A6J1G764	2.7e-77	95.39	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111451371 PE=4 SV=1	[more]

BLAST of Lsi10G000510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902594.1	5.4e-80	99.34	F-box protein SNE [Benincasa hispida]	[more]
XP_004140002.1	1.7e-78	97.37	F-box protein SNE [Cucumis sativus] >XP_031743985.1 F-box protein SNE [Cucumis s...	[more]
KAA0060791.1	1.1e-77	96.71	F-box protein SNE [Cucumis melo var. makuwa] >TYK11951.1 F-box protein SNE [Cucu...	[more]
XP_016903159.1	4.2e-77	96.05	PREDICTED: F-box protein SNE [Cucumis melo]	[more]
XP_022947535.1	5.5e-77	95.39	F-box protein SNE-like [Cucurbita moschata] >XP_022971122.1 F-box protein SNE-li...	[more]

BLAST of Lsi10G000510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	1.7e-36	53.90	F-box family protein	[more]
AT4G24210.1	1.2e-13	35.90	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 22..60 e-value: 0.0073 score: 25.5
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 23..63 e-value: 1.1E-8 score: 34.8
None	No IPR available	GENE3D	1.20.1280.50		coord: 8..92 e-value: 1.8E-9 score: 39.4
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 3..152
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 23..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G000510.1	Lsi10G000510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding