Lsi09G015920 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G015920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nuclear transport factor 2 family protein
Location	chr09: 24044545 .. 24047212 (-)
RNA-Seq Expression	Lsi09G015920
Synteny	Lsi09G015920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCTGCCACTCGTTTTGGCGCGGCAAAGCTCCAAAAACATTCTGCTTCAATCAACTACCAAACCATCTTTCTCTCGACGACTTCATGTTCTGTAATTCGCAATGGCGACCATTTTCTCTTTTCCATCACATTCTTCCCTCCAGACCTCTCTCAATGCCATTCGACCTAATCGCCCTCTCAAAATCTGCAGAATCCACTGCCAGGGGAACAATCCCACTACCGATTCGCCGAAGAATCAAGAATCCAAGCCTGAGAATGCGGTGCTGAAGGTCGCTTGGTATGGCTCCGAGCTCTTGGGGATCGCCGCTTCATTTCTCCGTCCGCCGTCGGATGTCCAAACTCCCGTTAGGGCTCAGGAGCTCGCCAGAGATGTGTCCGGTGCAATTCGTCGCCCGCTGATCGTGGAAACGATTAAAGAGGACTTTGGGCAGTCCTACTTCGTCACAGGTTCGTGAAATTTTTGTTTGTGCGAAAGCTTGCTGCTGTGCTTTGTTTTTTGTAGCTGGAAGTTTGAAAATTGTTGGGTTCTGTCGTTCTTTTGAAATGAAGATTGTTTTGTTCAATTCAAGTTGTTTTTGGCCAATTATTACTGATCAATAGTTTGTTCGTATGGAGAAGTTGTTGAAGTTTAGGAATAGAAAACCAGTAGTATAGAGTTGGAGTGTTCGTCAAAATTCCTTAATTTGCGCTTAACAATGTTGCCATAGTTTCATTTTGGGCCCTATAGTTTGATTAAATCTCACAAGTCAGTCATATCTTGAAACTATAAGGACTAAAATGAAATTCAATCTGAGCCATAATGACTCAAATTATAGGAACCATATTGAAGTTTCTAAAGCAATAGACACCAAATTCAAATATTTTGTCTAAGGAAACATAGCTTAGTGGTAAACTAGTAATTGACATGTACTCCATCTAAACAATTATATTCGTCCTCATTGTTTAATAGATGAATAACATGAATTCAAATATGTATATTAACATGTTAACATGGGCATCTAAGGAACAATATAGTAGGTCAATAATAAAGCAGGTAGATATAAGGTGGCATTATGGACGTTTAAAGATTAATGTGGTTATATTTATAAAGTTGTTAACTTACAAGCTTAGTCCTTAAACTTTAGAAAATATCTATTTGGTCTCTTGTGTCTACTTTTCTATCTTAGTGTAGAGCTTGTGACAGTTTTTTCAACTTTTGTTTGTGACAGTTTTTTCAACTTTTGTTATTTGTGTATTTGGTGATGATCGCAGGGAACCTTACTCTTGAAGCTTACGAAGAGCAGTGTGAATTTGCTGATCCGGCTGGTTCTTTCAAAGGGCTTCGTCGATTTAAAAGAAACTGTACAAACTTCGGATCCCTTGTGGATAAGTCAGACATGAAACTAACCAAATGGGAGGATTTTGAGGTAAGTTCACTCTAGAGTGCTGTTGTTTTTTTGTTTACTGAGCTCAGTGTTGAATTGTTAGTTGTTTGGACTGAGTACAGGACAAGGGCATTGGACATTGGAAGTTCAGTTGTATCTTGTCGTTTCCTTGGAGACCAATTCTATCTGGTACTTTTAATCTATATTATGCATTAGAGAGTGGGATAATTTTGTTTTTTTAAGTGAAAAACTTGATTGGATAGGTTGTCCCGTTAGATTAGTTGAGATATGCACAAGTTGGCCCGGTCACTTACGGATTTCAAAAAAGAATGTAATTAAGTTTTTCCTCCATGAAGTTTTAGAGCTTTGAAATAGTAATAAAAGGTACTTTTGACCTATTAAAGGGTCTTCTCAAAACTTTCATGAAATAAGTTTGTGTTAAATTTCTATAGAGCTATATATTGTCAAGTTCAAACATCTTCTTGCTTGCATTCTAAACAATCTGGCAAAAATATTGCAGCAACTGGATATACAGAGTATTATTTTGATGCAAGATCTGGAAAAGTATGCAGGTAATATAAAAGTACTCTCTCAAACTTTGCTTTTGTGTTTCTGAATCTTCTTTGCTAAAATCTCCATTTCATTCCAACTTTTGATGGAAAATTTCAGGCATGTAGAACACTGGAATGTTCCTAAAATGGCTTTACTGAAGCAAATTTTGAGACCCACTCAAGAGTGGCTGTGGTTTAAGAAAGCAGGTGGTGGCTGATTTTTCATTCTGATAAGAACATAGCCTAGAACAAAAACCTTTTTAGAGTATGGACTGAAATCAGCTTCATGTAAATTTTATAGTTTGATTTGAAAAATATGTTTTGTGGGGGTAATATAAGGAAATTATATGTAATAATTTTTTTTTTTTTTTTTTTTAAGTATTATAATAGAGAGAGATTTGTACAGATGGAACATGAAAGAATGAGATATTACACAGCTGGTTGATTAGTGCCTACCTTTTTCTATGAGTGGAATTAGTTGACTGAGAATCTGAGGTGAGCCATCAAAGGTGGAGCTGTAACAATGGGATTCCAGGGTAATAAGAGGGGTTTTCAAGGACTTTGGTGCAATATGGATTGTTTGAGGTGCTTCTGGTTGACAATGTATTTTTGTAAAAGTTATTAGTGTCTTACTAAAATTTCAGGGAAGGGTAAAACGTTTATTGTAAATTAAAAAAAAAAAAAAAAAAAAAAATTTTTTAGTTCAATAAATTTTTCAATTTAAAAAGTGTTTAATATGCTTTTAAACTTGC

mRNA sequence

TGGCTGCCACTCGTTTTGGCGCGGCAAAGCTCCAAAAACATTCTGCTTCAATCAACTACCAAACCATCTTTCTCTCGACGACTTCATGTTCTGTAATTCGCAATGGCGACCATTTTCTCTTTTCCATCACATTCTTCCCTCCAGACCTCTCTCAATGCCATTCGACCTAATCGCCCTCTCAAAATCTGCAGAATCCACTGCCAGGGGAACAATCCCACTACCGATTCGCCGAAGAATCAAGAATCCAAGCCTGAGAATGCGGTGCTGAAGGTCGCTTGGTATGGCTCCGAGCTCTTGGGGATCGCCGCTTCATTTCTCCGTCCGCCGTCGGATGTCCAAACTCCCGTTAGGGCTCAGGAGCTCGCCAGAGATGTGTCCGGTGCAATTCGTCGCCCGCTGATCGTGGAAACGATTAAAGAGGACTTTGGGCAGTCCTACTTCGTCACAGGGAACCTTACTCTTGAAGCTTACGAAGAGCAGTGTGAATTTGCTGATCCGGCTGGTTCTTTCAAAGGGCTTCGTCGATTTAAAAGAAACTGTACAAACTTCGGATCCCTTGTGGATAAGTCAGACATGAAACTAACCAAATGGGAGGATTTTGAGGACAAGGGCATTGGACATTGGAAGTTCAGTTGTATCTTGTCGTTTCCTTGGAGACCAATTCTATCTGCAACTGGATATACAGAGTATTATTTTGATGCAAGATCTGGAAAAGTATGCAGGCATGTAGAACACTGGAATGTTCCTAAAATGGCTTTACTGAAGCAAATTTTGAGACCCACTCAAGAGTGGCTGTGGTTTAAGAAAGCAGGTGGTGGCTGATTTTTCATTCTGATAAGAACATAGCCTAGAACAAAAACCTTTTTAGAGTATGGACTGAAATCAGCTTCATGTAAATTTTATAGTTTGATTTGAAAAATATGTTTTGTGGGGGTAATATAAGGAAATTATATGTAATAATTTTTTTTTTTTTTTTTTTTAAGTATTATAATAGAGAGAGATTTGTACAGATGGAACATGAAAGAATGAGATATTACACAGCTGGTTGATTAGTGCCTACCTTTTTCTATGAGTGGAATTAGTTGACTGAGAATCTGAGGTGAGCCATCAAAGGTGGAGCTGTAACAATGGGATTCCAGGGTAATAAGAGGGGTTTTCAAGGACTTTGGTGCAATATGGATTGTTTGAGGTGCTTCTGGTTGACAATGTATTTTTGTAAAAGTTATTAGTGTCTTACTAAAATTTCAGGGAAGGGTAAAACGTTTATTGTAAATTAAAAAAAAAGTGTTTAATATGCTTTTAAACTTGC

Coding sequence (CDS)

ATGGCGACCATTTTCTCTTTTCCATCACATTCTTCCCTCCAGACCTCTCTCAATGCCATTCGACCTAATCGCCCTCTCAAAATCTGCAGAATCCACTGCCAGGGGAACAATCCCACTACCGATTCGCCGAAGAATCAAGAATCCAAGCCTGAGAATGCGGTGCTGAAGGTCGCTTGGTATGGCTCCGAGCTCTTGGGGATCGCCGCTTCATTTCTCCGTCCGCCGTCGGATGTCCAAACTCCCGTTAGGGCTCAGGAGCTCGCCAGAGATGTGTCCGGTGCAATTCGTCGCCCGCTGATCGTGGAAACGATTAAAGAGGACTTTGGGCAGTCCTACTTCGTCACAGGGAACCTTACTCTTGAAGCTTACGAAGAGCAGTGTGAATTTGCTGATCCGGCTGGTTCTTTCAAAGGGCTTCGTCGATTTAAAAGAAACTGTACAAACTTCGGATCCCTTGTGGATAAGTCAGACATGAAACTAACCAAATGGGAGGATTTTGAGGACAAGGGCATTGGACATTGGAAGTTCAGTTGTATCTTGTCGTTTCCTTGGAGACCAATTCTATCTGCAACTGGATATACAGAGTATTATTTTGATGCAAGATCTGGAAAAGTATGCAGGCATGTAGAACACTGGAATGTTCCTAAAATGGCTTTACTGAAGCAAATTTTGAGACCCACTCAAGAGTGGCTGTGGTTTAAGAAAGCAGGTGGTGGCTGA

Protein sequence

MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTLEAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCILSFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAGGG

Homology

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BLAST of Lsi09G015920 vs. ExPASy TrEMBL
Match: A0A5D3BY85 (Nuclear transport factor 2 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001340 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.2e-127
Identity = 219/238 (92.02%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWY 60
           MATI SF  HSSLQTSL +IRPN  L+ICRIHC+GNNPTTDSP NQESKPENAVLKVAWY
Sbjct: 1   MATIVSFQLHSSLQTSLYSIRPNPSLRICRIHCRGNNPTTDSPNNQESKPENAVLKVAWY 60

Query: 61  GSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTL 120
           GSELLGIAASFLRPPSDVQTPVRAQEL  DVSGAI RPLIVETIKEDF +SYFVTGNLTL
Sbjct: 61  GSELLGIAASFLRPPSDVQTPVRAQELTTDVSGAIPRPLIVETIKEDFRRSYFVTGNLTL 120

Query: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCIL 180
           EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKS+MKLTKWEDFEDKGIGHWKFSCIL
Sbjct: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSNMKLTKWEDFEDKGIGHWKFSCIL 180

Query: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAGG 239
           SFPWRPILSATGYT+YYFDARSGKVCRHVEHWNVPKMALLKQILRPT++WLWFKKAGG
Sbjct: 181 SFPWRPILSATGYTDYYFDARSGKVCRHVEHWNVPKMALLKQILRPTRDWLWFKKAGG 238

[Close]

BLAST of Lsi09G015920 vs. ExPASy TrEMBL
Match: A0A1S3C8H3 (uncharacterized protein LOC103497690 OS=Cucumis melo OX=3656 GN=LOC103497690 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.2e-127
Identity = 219/238 (92.02%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWY 60
           MATI SF  HSSLQTSL +IRPN  L+ICRIHC+GNNPTTDSP NQESKPENAVLKVAWY
Sbjct: 1   MATIVSFQLHSSLQTSLYSIRPNPSLRICRIHCRGNNPTTDSPNNQESKPENAVLKVAWY 60

Query: 61  GSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTL 120
           GSELLGIAASFLRPPSDVQTPVRAQEL  DVSGAI RPLIVETIKEDF +SYFVTGNLTL
Sbjct: 61  GSELLGIAASFLRPPSDVQTPVRAQELTTDVSGAIPRPLIVETIKEDFRRSYFVTGNLTL 120

Query: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCIL 180
           EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKS+MKLTKWEDFEDKGIGHWKFSCIL
Sbjct: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSNMKLTKWEDFEDKGIGHWKFSCIL 180

Query: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAGG 239
           SFPWRPILSATGYT+YYFDARSGKVCRHVEHWNVPKMALLKQILRPT++WLWFKKAGG
Sbjct: 181 SFPWRPILSATGYTDYYFDARSGKVCRHVEHWNVPKMALLKQILRPTRDWLWFKKAGG 238

[Close]

BLAST of Lsi09G015920 vs. ExPASy TrEMBL
Match: A0A6J1H5M4 (uncharacterized protein LOC111460260 OS=Cucurbita moschata OX=3662 GN=LOC111460260 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.3e-123
Identity = 212/237 (89.45%), Postives = 223/237 (94.09%), Query Frame = 0


Query: 1   MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWY 60
           MATIF F S +SLQTSLNAIRPNRPLKIC+I CQG NP T SPKN+ESKPENAVLKVAWY
Sbjct: 1   MATIFPFQSRTSLQTSLNAIRPNRPLKICKIRCQGENPATGSPKNRESKPENAVLKVAWY 60

Query: 61  GSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTL 120
           GSELLGIAASFLRPP+DV+TPVRAQELARDVSGAIRRP+IVETIK+DF +SYFVTGNLT+
Sbjct: 61  GSELLGIAASFLRPPTDVETPVRAQELARDVSGAIRRPVIVETIKKDFERSYFVTGNLTV 120

Query: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCIL 180
           EAYEEQCEFADPAGSFKGL RFKRNCTNFGSLVDKS+MKLTKWEDFEDKGIGHWKFSCIL
Sbjct: 121 EAYEEQCEFADPAGSFKGLSRFKRNCTNFGSLVDKSNMKLTKWEDFEDKGIGHWKFSCIL 180

Query: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAG 238
           SFPWRPILSATGYTEYYFDA SGKV RHVEHWNVPKMALL QILRPT+ WLWFKK G
Sbjct: 181 SFPWRPILSATGYTEYYFDAGSGKVSRHVEHWNVPKMALLNQILRPTRAWLWFKKPG 237

[Close]

BLAST of Lsi09G015920 vs. ExPASy TrEMBL
Match: A0A6J1KYC4 (uncharacterized protein LOC111499312 OS=Cucurbita maxima OX=3661 GN=LOC111499312 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.3e-122
Identity = 210/237 (88.61%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1   MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWY 60
           MATIF F S +SL+TSLNAIRPNRPLKIC I CQG+NP TDSPKN+ESKPENAVLKVAWY
Sbjct: 1   MATIFPFQSRTSLRTSLNAIRPNRPLKICTIRCQGDNPATDSPKNRESKPENAVLKVAWY 60

Query: 61  GSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTL 120
           GSELLGIAASFLRPP+DV+TPVRAQEL RDVSGAIRRP+IVETIK+DF +SYFVTGNLT+
Sbjct: 61  GSELLGIAASFLRPPTDVETPVRAQELTRDVSGAIRRPVIVETIKKDFERSYFVTGNLTV 120

Query: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCIL 180
           EAYEEQCEFADPAGSFKGL RFKRNCTNFGSLVDKS+MKLTKW DFEDKGIGHWKFSCIL
Sbjct: 121 EAYEEQCEFADPAGSFKGLSRFKRNCTNFGSLVDKSNMKLTKWVDFEDKGIGHWKFSCIL 180

Query: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAG 238
           SFPWRPILSATGYTEYYFDA SGKV RHVEHWNVPKMALL QILRPT+ WLWFKK G
Sbjct: 181 SFPWRPILSATGYTEYYFDAGSGKVSRHVEHWNVPKMALLNQILRPTRAWLWFKKPG 237

[Close]

BLAST of Lsi09G015920 vs. ExPASy TrEMBL
Match: A0A6J1CZI8 (uncharacterized protein LOC111016220 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016220 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.3e-114
Identity = 202/243 (83.13%), Postives = 219/243 (90.12%), Query Frame = 0


Query: 1   MATIFSFPS--HSSLQTS-LNAIRPNRPLKICRIHCQGN--NPTTDSPKNQESKPENAVL 60
           MA I SF S   + LQTS +N +RPN PLKICRI C+G   NP TDS KN+ES+PENA+L
Sbjct: 1   MAAICSFQSLTITPLQTSRINPLRPNSPLKICRIRCRGENPNPATDSAKNRESEPENALL 60

Query: 61  KVAWYGSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVT 120
           KVAWYGSELLGIAASFLR PSD + PVRA +LA DVSGAIRR LIVETIKEDFG+SYFVT
Sbjct: 61  KVAWYGSELLGIAASFLRSPSDAEAPVRAPDLATDVSGAIRRGLIVETIKEDFGRSYFVT 120

Query: 121 GNLTLEAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWK 180
           GNLTL+AYEE+CEFADPAGSFKGLRRF+RNCTNFGSLV+ S+MKLTKWEDFEDKGIGHWK
Sbjct: 121 GNLTLDAYEEECEFADPAGSFKGLRRFQRNCTNFGSLVENSNMKLTKWEDFEDKGIGHWK 180

Query: 181 FSCILSFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKK 239
           FSC+LSFPWRPILSATGYTEYYFDA SGKVCRHVEHWNVPKMALLKQILRPT+EWLWFKK
Sbjct: 181 FSCVLSFPWRPILSATGYTEYYFDAGSGKVCRHVEHWNVPKMALLKQILRPTREWLWFKK 240

[Close]

BLAST of Lsi09G015920 vs. NCBI nr
Match: XP_038906789.1 (uncharacterized protein LOC120092709 isoform X1 [Benincasa hispida])

HSP 1 Score: 475.7 bits (1223), Expect = 2.3e-130
Identity = 223/239 (93.31%), Postives = 231/239 (96.65%), Query Frame = 0


Query: 1   MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWY 60
           MATIFS  SHSSL+TSLN IRPN PL+I RI CQGNNP TDSPKNQESKPENAVLKVAWY
Sbjct: 1   MATIFSIQSHSSLRTSLNPIRPNLPLRISRIRCQGNNPATDSPKNQESKPENAVLKVAWY 60

Query: 61  GSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTL 120
           GSELLGIAASFLRPPSDV+TP+RAQELARDVSGAI RPLIVETIKEDFG+SYFVTGNLTL
Sbjct: 61  GSELLGIAASFLRPPSDVETPLRAQELARDVSGAIHRPLIVETIKEDFGRSYFVTGNLTL 120

Query: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCIL 180
           EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKS+MKLTKWEDFEDKGIGHW+FSCIL
Sbjct: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSNMKLTKWEDFEDKGIGHWRFSCIL 180

Query: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAGGG 240
           SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPT+EWLWFKKAGGG
Sbjct: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTREWLWFKKAGGG 239

[Close]

BLAST of Lsi09G015920 vs. NCBI nr
Match: XP_008458172.1 (PREDICTED: uncharacterized protein LOC103497690 [Cucumis melo] >TYK03039.1 Nuclear transport factor 2 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 465.7 bits (1197), Expect = 2.4e-127
Identity = 219/238 (92.02%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWY 60
           MATI SF  HSSLQTSL +IRPN  L+ICRIHC+GNNPTTDSP NQESKPENAVLKVAWY
Sbjct: 1   MATIVSFQLHSSLQTSLYSIRPNPSLRICRIHCRGNNPTTDSPNNQESKPENAVLKVAWY 60

Query: 61  GSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTL 120
           GSELLGIAASFLRPPSDVQTPVRAQEL  DVSGAI RPLIVETIKEDF +SYFVTGNLTL
Sbjct: 61  GSELLGIAASFLRPPSDVQTPVRAQELTTDVSGAIPRPLIVETIKEDFRRSYFVTGNLTL 120

Query: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCIL 180
           EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKS+MKLTKWEDFEDKGIGHWKFSCIL
Sbjct: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSNMKLTKWEDFEDKGIGHWKFSCIL 180

Query: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAGG 239
           SFPWRPILSATGYT+YYFDARSGKVCRHVEHWNVPKMALLKQILRPT++WLWFKKAGG
Sbjct: 181 SFPWRPILSATGYTDYYFDARSGKVCRHVEHWNVPKMALLKQILRPTRDWLWFKKAGG 238

[Close]

BLAST of Lsi09G015920 vs. NCBI nr
Match: XP_004138484.1 (uncharacterized protein LOC101218208 isoform X1 [Cucumis sativus] >KAE8646551.1 hypothetical protein Csa_005768 [Cucumis sativus])

HSP 1 Score: 461.5 bits (1186), Expect = 4.6e-126
Identity = 216/238 (90.76%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWY 60
           MATI SF  HSSL TSLN+IRPN  L+ICRIHCQGNNPTTDSP NQESKPENAVLKVAWY
Sbjct: 1   MATIVSFQPHSSLHTSLNSIRPNPSLRICRIHCQGNNPTTDSPNNQESKPENAVLKVAWY 60

Query: 61  GSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTL 120
           GSELLGIAAS+LRPP DVQTP+RAQEL  DVSG+I RPLIVETIKEDF +SYFVTGNLTL
Sbjct: 61  GSELLGIAASYLRPPLDVQTPLRAQELTTDVSGSIPRPLIVETIKEDFRRSYFVTGNLTL 120

Query: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCIL 180
           +AYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKS+MKLTKWE FEDKGIGHWKFSCIL
Sbjct: 121 QAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSNMKLTKWEGFEDKGIGHWKFSCIL 180

Query: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAGG 239
           SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPT+EWLWFKKAGG
Sbjct: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTREWLWFKKAGG 238

[Close]

BLAST of Lsi09G015920 vs. NCBI nr
Match: XP_023547468.1 (uncharacterized protein LOC111806404 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454.9 bits (1169), Expect = 4.3e-124
Identity = 214/237 (90.30%), Postives = 224/237 (94.51%), Query Frame = 0


Query: 1   MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWY 60
           MATIF F S +SLQTSLNAIRPNRPLKIC I CQG+NP TDSPKNQESKPENAVLKVAWY
Sbjct: 1   MATIFPFQSRTSLQTSLNAIRPNRPLKICTIRCQGDNPATDSPKNQESKPENAVLKVAWY 60

Query: 61  GSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTL 120
           GSELLGIAASFLRPP+DV+TPVRAQELARDVSGAIRRP+IVETIK+DF +SYFVTGNLT+
Sbjct: 61  GSELLGIAASFLRPPTDVETPVRAQELARDVSGAIRRPVIVETIKKDFERSYFVTGNLTV 120

Query: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCIL 180
           EAYEEQCEFADPAGSFKGL RFKRNCTNFGSLVDKS+MKLTKWEDFEDKGIGHWKFSCIL
Sbjct: 121 EAYEEQCEFADPAGSFKGLSRFKRNCTNFGSLVDKSNMKLTKWEDFEDKGIGHWKFSCIL 180

Query: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAG 238
           SFPWRPILSATGYTEYYFDA SGKV RHVEHWNVPKMALL QILRPT+ WLWFKK G
Sbjct: 181 SFPWRPILSATGYTEYYFDAGSGKVSRHVEHWNVPKMALLNQILRPTRAWLWFKKPG 237

[Close]

BLAST of Lsi09G015920 vs. NCBI nr
Match: XP_022959200.1 (uncharacterized protein LOC111460260 [Cucurbita moschata])

HSP 1 Score: 451.4 bits (1160), Expect = 4.7e-123
Identity = 212/237 (89.45%), Postives = 223/237 (94.09%), Query Frame = 0


Query: 1   MATIFSFPSHSSLQTSLNAIRPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWY 60
           MATIF F S +SLQTSLNAIRPNRPLKIC+I CQG NP T SPKN+ESKPENAVLKVAWY
Sbjct: 1   MATIFPFQSRTSLQTSLNAIRPNRPLKICKIRCQGENPATGSPKNRESKPENAVLKVAWY 60

Query: 61  GSELLGIAASFLRPPSDVQTPVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTL 120
           GSELLGIAASFLRPP+DV+TPVRAQELARDVSGAIRRP+IVETIK+DF +SYFVTGNLT+
Sbjct: 61  GSELLGIAASFLRPPTDVETPVRAQELARDVSGAIRRPVIVETIKKDFERSYFVTGNLTV 120

Query: 121 EAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCIL 180
           EAYEEQCEFADPAGSFKGL RFKRNCTNFGSLVDKS+MKLTKWEDFEDKGIGHWKFSCIL
Sbjct: 121 EAYEEQCEFADPAGSFKGLSRFKRNCTNFGSLVDKSNMKLTKWEDFEDKGIGHWKFSCIL 180

Query: 181 SFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVPKMALLKQILRPTQEWLWFKKAG 238
           SFPWRPILSATGYTEYYFDA SGKV RHVEHWNVPKMALL QILRPT+ WLWFKK G
Sbjct: 181 SFPWRPILSATGYTEYYFDAGSGKVSRHVEHWNVPKMALLNQILRPTRAWLWFKKPG 237

[Close]

BLAST of Lsi09G015920 vs. TAIR 10
Match: AT2G46100.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 302.8 bits (774), Expect = 2.5e-82
Identity = 136/208 (65.38%), Postives = 166/208 (79.81%), Query Frame = 0


Query: 21  RPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVQT 80
           R NR  +   + C+G NPT +   ++  +P+N +LK+AWYGSELLGIAAS  R P +   
Sbjct: 27  RTNRRFEATGVSCRGQNPTDEPQTSKGPEPDNVLLKIAWYGSELLGIAASVFRSP-ETSP 86

Query: 81  PVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTLEAYEEQCEFADPAGSFKGLR 140
            V   E+  D SG   R  +V++IK+DF +SYFVTGNLT E YEE+CEFADPAGSFKGL 
Sbjct: 87  IVTGFEVPVDCSGRAVRVAVVDSIKQDFKRSYFVTGNLTPEVYEEKCEFADPAGSFKGLA 146

Query: 141 RFKRNCTNFGSLVDKSDMKLTKWEDFEDKGIGHWKFSCILSFPWRPILSATGYTEYYFDA 200
           RFKRNCTNFGSL++KS+MKL KWE+FEDKGIGHWKFSC++SFPW+PILSATGYTEYYFD 
Sbjct: 147 RFKRNCTNFGSLIEKSNMKLMKWENFEDKGIGHWKFSCVMSFPWKPILSATGYTEYYFDT 206

Query: 201 RSGKVCRHVEHWNVPKMALLKQILRPTQ 229
            SGK+CRHVEHWNVPK+AL KQ+LRP++
Sbjct: 207 ESGKICRHVEHWNVPKIALFKQLLRPSR 233

[Close]

BLAST of Lsi09G015920 vs. TAIR 10
Match: AT2G46100.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 179.5 bits (454), Expect = 3.2e-45
Identity = 86/147 (58.50%), Postives = 108/147 (73.47%), Query Frame = 0


Query: 21  RPNRPLKICRIHCQGNNPTTDSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVQT 80
           R NR  +   + C+G NPT +   ++  +P+N +LK+AWYGSELLGIAAS  R P +   
Sbjct: 27  RTNRRFEATGVSCRGQNPTDEPQTSKGPEPDNVLLKIAWYGSELLGIAASVFRSP-ETSP 86

Query: 81  PVRAQELARDVSGAIRRPLIVETIKEDFGQSYFVTGNLTLEAYEEQCEFADPAGSFKGLR 140
            V   E+  D SG   R  +V++IK+DF +SYFVTGNLT E YEE+CEFADPAGSFKGL 
Sbjct: 87  IVTGFEVPVDCSGRAVRVAVVDSIKQDFKRSYFVTGNLTPEVYEEKCEFADPAGSFKGLA 146

Query: 141 RFKRNCTNFGSLVDKSDMKLTKWEDFE 168
           RFKRNCTNFGSL++KS+MKL KWE+FE
Sbjct: 147 RFKRNCTNFGSLIEKSNMKLMKWENFE 172

[Close]

BLAST of Lsi09G015920 vs. TAIR 10
Match: AT3G04890.1 (Uncharacterized conserved protein (DUF2358) )

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-17
Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 100 IVETIKEDFGQSYFVTGNLTLEAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMK 159
           ++  ++ D+   YFVTG LT   Y + C F DP  SF+G   ++RN       ++ + ++
Sbjct: 80  VMGILRSDYRNFYFVTGVLTSAIYSDDCIFEDPTISFQGTELYERNLKLLVPFLEDASIE 139

Query: 160 LTKWEDFEDKG----IGHWKFSCILSFPWRPILSATGYTEYYFDARSGKVCRHVEHWNVP 219
           L   E  E       +  WK    L  PWRP++S  G T Y  D +  K+ RHVE WNV 
Sbjct: 140 LQNMEKSESSQRNYILATWKLRTYLKLPWRPLISINGNTVYDLD-KDFKIVRHVESWNVS 199

Query: 220 KMALLKQI 224
            +  + QI
Sbjct: 200 ALEAIGQI 206

[Close]

BLAST of Lsi09G015920 vs. TAIR 10
Match: AT3G04890.2 (Uncharacterized conserved protein (DUF2358) )

HSP 1 Score: 68.6 bits (166), Expect = 8.0e-12
Identity = 33/104 (31.73%), Postives = 50/104 (48.08%), Query Frame = 0


Query: 100 IVETIKEDFGQSYFVTGNLTLEAYEEQCEFADPAGSFKGLRRFKRNCTNFGSLVDKSDMK 159
           ++  ++ D+   YFVTG LT   Y + C F DP  SF+G   ++RN       ++ + ++
Sbjct: 80  VMGILRSDYRNFYFVTGVLTSAIYSDDCIFEDPTISFQGTELYERNLKLLVPFLEDASIE 139

Query: 160 LTKWEDFEDKG----IGHWKFSCILSFPWRPILSATGYTEYYFD 200
           L   E  E       +  WK    L  PWRP++S  G T Y  D
Sbjct: 140 LQNMEKSESSQRNYILATWKLRTYLKLPWRPLISINGNTVYDLD 183

The following BLAST results are available for this feature:

BLAST of Lsi09G015920 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G015920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY85	1.2e-127	92.02	Nuclear transport factor 2 family protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C8H3	1.2e-127	92.02	uncharacterized protein LOC103497690 OS=Cucumis melo OX=3656 GN=LOC103497690 PE=...	[more]
A0A6J1H5M4	2.3e-123	89.45	uncharacterized protein LOC111460260 OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]
A0A6J1KYC4	3.3e-122	88.61	uncharacterized protein LOC111499312 OS=Cucurbita maxima OX=3661 GN=LOC111499312...	[more]
A0A6J1CZI8	3.3e-114	83.13	uncharacterized protein LOC111016220 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lsi09G015920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906789.1	2.3e-130	93.31	uncharacterized protein LOC120092709 isoform X1 [Benincasa hispida]	[more]
XP_008458172.1	2.4e-127	92.02	PREDICTED: uncharacterized protein LOC103497690 [Cucumis melo] >TYK03039.1 Nucle...	[more]
XP_004138484.1	4.6e-126	90.76	uncharacterized protein LOC101218208 isoform X1 [Cucumis sativus] >KAE8646551.1 ...	[more]
XP_023547468.1	4.3e-124	90.30	uncharacterized protein LOC111806404 [Cucurbita pepo subsp. pepo]	[more]
XP_022959200.1	4.7e-123	89.45	uncharacterized protein LOC111460260 [Cucurbita moschata]	[more]

BLAST of Lsi09G015920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46100.1	2.5e-82	65.38	Nuclear transport factor 2 (NTF2) family protein	[more]
AT2G46100.2	3.2e-45	58.50	Nuclear transport factor 2 (NTF2) family protein	[more]
AT3G04890.1	3.7e-17	33.59	Uncharacterized conserved protein (DUF2358)	[more]
AT3G04890.2	8.0e-12	31.73	Uncharacterized conserved protein (DUF2358)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018790	Protein of unknown function DUF2358	PFAM	PF10184	DUF2358	coord: 100..208 e-value: 6.0E-11 score: 42.6
None	No IPR available	PANTHER	PTHR34123:SF1	OS04G0578200 PROTEIN	coord: 6..232
None	No IPR available	PANTHER	PTHR34123	FAMILY NOT NAMED	coord: 6..232
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 119..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G015920.1	Lsi09G015920.1	mRNA