Lsi09G015020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G015020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SINE3
Location	chr09: 23040803 .. 23041882 (+)
RNA-Seq Expression	Lsi09G015020
Synteny	Lsi09G015020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACCACATCCATTGGCGCCAAAGCTTAATTTCAGAACTTCACAAAATTTTCCCGCGATATCAAGATGGAGAAAAGGATGAAAGACTACCAAACTCCGCAGAGAGATCAAACCGCAAATCGTAGATCAAGGAAGCCTCAGAAGGTACGATTTCTCTGTATTTAATTTGTTGTTCTCAATCTCCCTCATTCTCTAGTTTGATTTTTTGTTCGTTTTACTTCCTCTAAGATCGCCAAATGCTTGACTGCCACATTTTCATCACTTTCCGACGATAAAATCCAGCCAATTTCTAAGGAAGATTTCTCTCCGGTTTCTGTTGTCTCAGACATCAATCAAATTCCAGATATCGATAGAGTAAGTTTCGATTCATCTGTCATTTTTTGTTTTAACTTTTCATTTCGTTCTTCTGTTCTTCCTTTGTGTTTTCCTGTCTTTTTCTCTTCCGTATTTTAGTTGATCTCAATTCGTGGAGTGGTAGATTTGTAATCTATTTTTTTTTCAAGTTTTATACGTCTGGAGATTCACTTGATGTATTTAACGTATGGTTAAACGATGAAACGGAGTATATGAGAGATTTACGACACTGGAATTTGATAGATTTGAAAATTTGTTAGCGTTCTAAGTTAGTTTTCTCAATTTCAGAGTTTCTTGCAAGGTGTTAATCCGGCATTTTCTGCTTCCTGCGGGACCTCGCTTTTCCCCGATCTTTCTCTATCTTCAGTTGTCAGTTTTGACAAGGTTCCAGTTAATTTTTCTGGATCTAATGATGATATGGATGAAGCAAGCGCGGGTTCAGTAGAGGTAGAGATTGCTGTGAATTCTCTACGGCGTGCTCTAACTCAAGTCCTGCAATCGACGGATGTTGATCATCAGTCTAAGAAGCTTATAGATGCATCTATGCGTATCATTGTGGATGACTTCCTTGCTATACCTCAAGAGCGAGATCAGATTGCTCAACTTATTTCTGTCAAAAATCATGTTCTCTCTCTCTGTGTATTCCTGTGGATCATCGTCTTGGCTATAGCTTTCTTTTTCGGTTCGGGAGTTAAGAGCTCCTTCATTGGTCCATTGCCAACTTAA

mRNA sequence

TTCACCACATCCATTGGCGCCAAAGCTTAATTTCAGAACTTCACAAAATTTTCCCGCGATATCAAGATGGAGAAAAGGATGAAAGACTACCAAACTCCGCAGAGAGATCAAACCGCAAATCGTAGATCAAGGAAGCCTCAGAAGATCGCCAAATGCTTGACTGCCACATTTTCATCACTTTCCGACGATAAAATCCAGCCAATTTCTAAGGAAGATTTCTCTCCGGTTTCTGTTGTCTCAGACATCAATCAAATTCCAGATATCGATAGAAGTTTCTTGCAAGGTGTTAATCCGGCATTTTCTGCTTCCTGCGGGACCTCGCTTTTCCCCGATCTTTCTCTATCTTCAGTTGTCAGTTTTGACAAGGTTCCAGTTAATTTTTCTGGATCTAATGATGATATGGATGAAGCAAGCGCGGGTTCAGTAGAGGTAGAGATTGCTGTGAATTCTCTACGGCGTGCTCTAACTCAAGTCCTGCAATCGACGGATGTTGATCATCAGTCTAAGAAGCTTATAGATGCATCTATGCGTATCATTGTGGATGACTTCCTTGCTATACCTCAAGAGCGAGATCAGATTGCTCAACTTATTTCTGTCAAAAATCATGTTCTCTCTCTCTGTGTATTCCTGTGGATCATCGTCTTGGCTATAGCTTTCTTTTTCGGTTCGGGAGTTAAGAGCTCCTTCATTGGTCCATTGCCAACTTAA

Coding sequence (CDS)

ATGGAGAAAAGGATGAAAGACTACCAAACTCCGCAGAGAGATCAAACCGCAAATCGTAGATCAAGGAAGCCTCAGAAGATCGCCAAATGCTTGACTGCCACATTTTCATCACTTTCCGACGATAAAATCCAGCCAATTTCTAAGGAAGATTTCTCTCCGGTTTCTGTTGTCTCAGACATCAATCAAATTCCAGATATCGATAGAAGTTTCTTGCAAGGTGTTAATCCGGCATTTTCTGCTTCCTGCGGGACCTCGCTTTTCCCCGATCTTTCTCTATCTTCAGTTGTCAGTTTTGACAAGGTTCCAGTTAATTTTTCTGGATCTAATGATGATATGGATGAAGCAAGCGCGGGTTCAGTAGAGGTAGAGATTGCTGTGAATTCTCTACGGCGTGCTCTAACTCAAGTCCTGCAATCGACGGATGTTGATCATCAGTCTAAGAAGCTTATAGATGCATCTATGCGTATCATTGTGGATGACTTCCTTGCTATACCTCAAGAGCGAGATCAGATTGCTCAACTTATTTCTGTCAAAAATCATGTTCTCTCTCTCTGTGTATTCCTGTGGATCATCGTCTTGGCTATAGCTTTCTTTTTCGGTTCGGGAGTTAAGAGCTCCTTCATTGGTCCATTGCCAACTTAA

Protein sequence

MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSFDKVPVNFSGSNDDMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT

Homology

[Close]

BLAST of Lsi09G015020 vs. ExPASy TrEMBL
Match: A0A1S4E1Y8 (uncharacterized protein LOC103497781 OS=Cucumis melo OX=3656 GN=LOC103497781 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 8.1e-88
Identity = 183/218 (83.94%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           MEKRMKD+QTPQR+QT NRRSRKPQKIAKCLTA+FSSLS+DKI  ISKE+ SP+SVVSD+
Sbjct: 1   MEKRMKDHQTPQREQTTNRRSRKPQKIAKCLTASFSSLSEDKIHSISKENSSPISVVSDV 60

Query: 61  NQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSNDDMDEA 120
           NQI DID SFLQGVNP FSA C TSLFPDLS SSVVSF     DKV V+FSGSN DM+EA
Sbjct: 61  NQISDIDSSFLQGVNPEFSACCDTSLFPDLSPSSVVSFDNELLDKVSVDFSGSN-DMNEA 120

Query: 121 SAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLI 180
           SAGS+E EIAVNSLRRALTQVL STDVDHQSKKLIDASMRIIVDDFLAIPQERD+IAQLI
Sbjct: 121 SAGSLEAEIAVNSLRRALTQVLLSTDVDHQSKKLIDASMRIIVDDFLAIPQERDRIAQLI 180

Query: 181 SVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           SVKN+VLS+CVFLWI+VLAIAFF GSGVKSSF GPLPT
Sbjct: 181 SVKNYVLSMCVFLWIVVLAIAFFVGSGVKSSFTGPLPT 217

[Close]

BLAST of Lsi09G015020 vs. ExPASy TrEMBL
Match: A0A5D3BTA3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00440 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 8.1e-88
Identity = 183/218 (83.94%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           MEKRMKD+QTPQR+QT NRRSRKPQKIAKCLTA+FSSLS+DKI  ISKE+ SP+SVVSD+
Sbjct: 1   MEKRMKDHQTPQREQTTNRRSRKPQKIAKCLTASFSSLSEDKIHSISKENSSPISVVSDV 60

Query: 61  NQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSNDDMDEA 120
           NQI DID SFLQGVNP FSA C TSLFPDLS SSVVSF     DKV V+FSGSN DM+EA
Sbjct: 61  NQISDIDSSFLQGVNPEFSACCDTSLFPDLSPSSVVSFDNELLDKVSVDFSGSN-DMNEA 120

Query: 121 SAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLI 180
           SAGS+E EIAVNSLRRALTQVL STDVDHQSKKLIDASMRIIVDDFLAIPQERD+IAQLI
Sbjct: 121 SAGSLEAEIAVNSLRRALTQVLLSTDVDHQSKKLIDASMRIIVDDFLAIPQERDRIAQLI 180

Query: 181 SVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           SVKN+VLS+CVFLWI+VLAIAFF GSGVKSSF GPLPT
Sbjct: 181 SVKNYVLSMCVFLWIVVLAIAFFVGSGVKSSFTGPLPT 217

[Close]

BLAST of Lsi09G015020 vs. ExPASy TrEMBL
Match: A0A6J1H5Y6 (uncharacterized protein LOC111460327 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460327 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 5.1e-82
Identity = 173/218 (79.36%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           ME+RMKD QTPQRDQ ANRRSRKP KIAKCLTATFSSLSDDKIQ  SK+DFS +SVVSD+
Sbjct: 1   MERRMKDSQTPQRDQAANRRSRKPLKIAKCLTATFSSLSDDKIQRSSKQDFSSISVVSDV 60

Query: 61  NQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSNDDMDEA 120
           NQIPDIDRSFL  VNPA SA CG+SL PDLS SSVV+F     DKVPVNFSGSN D+DE 
Sbjct: 61  NQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSN-DLDET 120

Query: 121 SAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLI 180
            AGSV  EIAV+SL RALTQVLQSTDVDHQ+KKLIDAS+RIIVDDFLAIPQ+RD I Q+I
Sbjct: 121 GAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQII 180

Query: 181 SVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           S KN VLS+ +FLWIIVLA+AFFF S VKSSFIGPLPT
Sbjct: 181 SAKNQVLSISLFLWIIVLALAFFFNSEVKSSFIGPLPT 217

[Close]

BLAST of Lsi09G015020 vs. ExPASy TrEMBL
Match: A0A0A0KI59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327950 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.1e-80
Identity = 171/218 (78.44%), Postives = 185/218 (84.86%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           MEKRMKD+QTPQR+QT NR SRKPQKIAKC +AT  SLS+DKI  ISKE+ SP+S VSD+
Sbjct: 1   MEKRMKDHQTPQREQTTNRTSRKPQKIAKCFSATLLSLSEDKIHSISKENSSPISAVSDL 60

Query: 61  NQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSNDDMDEA 120
           NQI DI  SFLQGVNP FSA C TSLFPDLS SSVVSF     DKV  +FSGSN D++EA
Sbjct: 61  NQISDIHSSFLQGVNPEFSACCDTSLFPDLSSSSVVSFDNELLDKVSADFSGSN-DINEA 120

Query: 121 SAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLI 180
           SAGSVE EIAVN +RRALTQVLQSTDVDHQSKKLIDASMRII DDFLAIPQ+RDQIAQLI
Sbjct: 121 SAGSVEAEIAVNFIRRALTQVLQSTDVDHQSKKLIDASMRIIADDFLAIPQQRDQIAQLI 180

Query: 181 SVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           S K HVL +CVFLWIIVLA AFF GSGV+SSF GPLPT
Sbjct: 181 SAKYHVLCVCVFLWIIVLAKAFFVGSGVESSFTGPLPT 217

[Close]

BLAST of Lsi09G015020 vs. ExPASy TrEMBL
Match: A0A6J1EQ83 (uncharacterized protein LOC111436822 OS=Cucurbita moschata OX=3662 GN=LOC111436822 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 8.9e-79
Identity = 168/218 (77.06%), Postives = 187/218 (85.78%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           MEKR K+YQTP RDQ ANRRS+KP KI K LTATFSS  DDKIQPI KEDFSP+SVVS+I
Sbjct: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPILKEDFSPISVVSNI 60

Query: 61  NQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSNDDMDEA 120
           +QIPDID SFLQ VNPA S SC +SLFP+LS SSVV+F     DKVPVNF GSN ++DEA
Sbjct: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSN-NLDEA 120

Query: 121 SAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLI 180
           SAGSVE EIAVN LRRAL+QVLQSTDVDHQSKKLIDAS+RIIVD+FLAIPQERD I +LI
Sbjct: 121 SAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLI 180

Query: 181 SVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           S K+HVLSL +FLWIIVL +AFF GSGV++ FIGPLPT
Sbjct: 181 SSKSHVLSLGLFLWIIVLVLAFFSGSGVENCFIGPLPT 217

[Close]

BLAST of Lsi09G015020 vs. NCBI nr
Match: XP_038876305.1 (uncharacterized protein LOC120068561 [Benincasa hispida])

HSP 1 Score: 367.9 bits (943), Expect = 6.1e-98
Identity = 201/218 (92.20%), Postives = 206/218 (94.50%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           MEK+MKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSP+SVV+DI
Sbjct: 1   MEKKMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPISVVTDI 60

Query: 61  NQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSNDDMDEA 120
           NQIPDID +FLQGVNPAFSASC TSLF DLS SSVVSF     DKVPVNFSGSN DMDEA
Sbjct: 61  NQIPDIDSNFLQGVNPAFSASCETSLFADLSPSSVVSFDNEQLDKVPVNFSGSN-DMDEA 120

Query: 121 SAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLI 180
           SAGSVEV+IAVNSLRRALTQVLQSTDVDHQSKKLIDASM IIVDDFLAIPQERDQIAQLI
Sbjct: 121 SAGSVEVQIAVNSLRRALTQVLQSTDVDHQSKKLIDASMSIIVDDFLAIPQERDQIAQLI 180

Query: 181 SVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           SVKNHVLSLCVFLWIIVLAIAFF GSGVKSSFIGPLPT
Sbjct: 181 SVKNHVLSLCVFLWIIVLAIAFFLGSGVKSSFIGPLPT 217

[Close]

BLAST of Lsi09G015020 vs. NCBI nr
Match: XP_008458341.1 (PREDICTED: uncharacterized protein LOC103497781 [Cucumis melo] >XP_016902243.1 PREDICTED: uncharacterized protein LOC103497781 [Cucumis melo] >XP_016902244.1 PREDICTED: uncharacterized protein LOC103497781 [Cucumis melo] >TYK02961.1 uncharacterized protein E5676_scaffold46G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 333.2 bits (853), Expect = 1.7e-87
Identity = 183/218 (83.94%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           MEKRMKD+QTPQR+QT NRRSRKPQKIAKCLTA+FSSLS+DKI  ISKE+ SP+SVVSD+
Sbjct: 1   MEKRMKDHQTPQREQTTNRRSRKPQKIAKCLTASFSSLSEDKIHSISKENSSPISVVSDV 60

Query: 61  NQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSNDDMDEA 120
           NQI DID SFLQGVNP FSA C TSLFPDLS SSVVSF     DKV V+FSGSN DM+EA
Sbjct: 61  NQISDIDSSFLQGVNPEFSACCDTSLFPDLSPSSVVSFDNELLDKVSVDFSGSN-DMNEA 120

Query: 121 SAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLI 180
           SAGS+E EIAVNSLRRALTQVL STDVDHQSKKLIDASMRIIVDDFLAIPQERD+IAQLI
Sbjct: 121 SAGSLEAEIAVNSLRRALTQVLLSTDVDHQSKKLIDASMRIIVDDFLAIPQERDRIAQLI 180

Query: 181 SVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           SVKN+VLS+CVFLWI+VLAIAFF GSGVKSSF GPLPT
Sbjct: 181 SVKNYVLSMCVFLWIVVLAIAFFVGSGVKSSFTGPLPT 217

[Close]

BLAST of Lsi09G015020 vs. NCBI nr
Match: XP_022959315.1 (uncharacterized protein LOC111460327 isoform X1 [Cucurbita moschata])

HSP 1 Score: 313.9 bits (803), Expect = 1.0e-81
Identity = 173/218 (79.36%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           ME+RMKD QTPQRDQ ANRRSRKP KIAKCLTATFSSLSDDKIQ  SK+DFS +SVVSD+
Sbjct: 1   MERRMKDSQTPQRDQAANRRSRKPLKIAKCLTATFSSLSDDKIQRSSKQDFSSISVVSDV 60

Query: 61  NQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSNDDMDEA 120
           NQIPDIDRSFL  VNPA SA CG+SL PDLS SSVV+F     DKVPVNFSGSN D+DE 
Sbjct: 61  NQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSN-DLDET 120

Query: 121 SAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLI 180
            AGSV  EIAV+SL RALTQVLQSTDVDHQ+KKLIDAS+RIIVDDFLAIPQ+RD I Q+I
Sbjct: 121 GAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQII 180

Query: 181 SVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           S KN VLS+ +FLWIIVLA+AFFF S VKSSFIGPLPT
Sbjct: 181 SAKNQVLSISLFLWIIVLALAFFFNSEVKSSFIGPLPT 217

[Close]

BLAST of Lsi09G015020 vs. NCBI nr
Match: KAG6575120.1 (hypothetical protein SDJN03_25759, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313.9 bits (803), Expect = 1.0e-81
Identity = 176/223 (78.92%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           MEKRMKD QTPQRDQ ANRRSRKP KIAKCLTATFSSLSDDKIQ  SK+DFSP+SVVSD+
Sbjct: 1   MEKRMKDSQTPQRDQAANRRSRKPLKIAKCLTATFSSLSDDKIQQSSKQDFSPISVVSDV 60

Query: 61  NQIPDIDR-----SFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSND 120
           NQIPDIDR     S+L  VNPA SA CG+SL PDLS SSVV+F     DKVPVNFSGSN 
Sbjct: 61  NQIPDIDRFPQFQSYLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSN- 120

Query: 121 DMDEASAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQ 180
           D+DE  AGSV  EIAVNSL RALTQVLQSTDVDHQ+KKLIDAS+RIIVDDFLAIPQ+RD 
Sbjct: 121 DLDETGAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDH 180

Query: 181 IAQLISVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           I QLIS KN VLS+ +FLWIIVLA+AFFF S VKSSFIGPLPT
Sbjct: 181 IFQLISAKNQVLSISLFLWIIVLALAFFFNSEVKSSFIGPLPT 222

[Close]

BLAST of Lsi09G015020 vs. NCBI nr
Match: XP_011657295.2 (uncharacterized protein LOC105435846 [Cucumis sativus] >KGN47662.2 hypothetical protein Csa_021768 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 4.4e-80
Identity = 171/218 (78.44%), Postives = 185/218 (84.86%), Query Frame = 0


Query: 1   MEKRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDI 60
           MEKRMKD+QTPQR+QT NR SRKPQKIAKC +AT  SLS+DKI  ISKE+ SP+S VSD+
Sbjct: 27  MEKRMKDHQTPQREQTTNRTSRKPQKIAKCFSATLLSLSEDKIHSISKENSSPISAVSDL 86

Query: 61  NQIPDIDRSFLQGVNPAFSASCGTSLFPDLSLSSVVSF-----DKVPVNFSGSNDDMDEA 120
           NQI DI  SFLQGVNP FSA C TSLFPDLS SSVVSF     DKV  +FSGSN D++EA
Sbjct: 87  NQISDIHSSFLQGVNPEFSACCDTSLFPDLSSSSVVSFDNELLDKVSADFSGSN-DINEA 146

Query: 121 SAGSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLI 180
           SAGSVE EIAVN +RRALTQVLQSTDVDHQSKKLIDASMRII DDFLAIPQ+RDQIAQLI
Sbjct: 147 SAGSVEAEIAVNFIRRALTQVLQSTDVDHQSKKLIDASMRIIADDFLAIPQQRDQIAQLI 206

Query: 181 SVKNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           S K HVL +CVFLWIIVLA AFF GSGV+SSF GPLPT
Sbjct: 207 SAKYHVLCVCVFLWIIVLAKAFFVGSGVESSFTGPLPT 243

[Close]

BLAST of Lsi09G015020 vs. TAIR 10
Match: AT3G06600.1 (unknown protein; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 9.3e-04
Identity = 60/216 (27.78%), Postives = 97/216 (44.91%), Query Frame = 0


Query: 3   KRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQ 62
           KR+KD +   R  T  +R            ATFS +S +  +     DFSP+S +S    
Sbjct: 20  KRLKDPEMKNRKVTTEKRQ----------IATFSDVSFESTK--DPMDFSPISQIS--GA 79

Query: 63  IPDID-RSFLQGVNPAFSASCGTSLFPDLSL----SSVVSFDKVPVNFSGSNDDMDEASA 122
           I D +  S +QG      +S      P++ L    S V +   V      S+ D  ++  
Sbjct: 80  ISDSEAESVIQG------SSLDLMSTPEICLPADDSPVSTITSVEARIDTSSTDRIQS-- 139

Query: 123 GSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISV 182
             V++  +V SLR  + ++          KKLI +     VD+      E + + ++++V
Sbjct: 140 -IVDLPASVQSLRGEINEL----------KKLICS-----VDN----SAEINWVDRVVTV 193

Query: 183 KNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           K  ++ L   LW I+ AI  FF SG + ++ GPLPT
Sbjct: 200 KFRIVLLSFILWAILAAIVVFFSSGEERAYRGPLPT 193

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BLAST of Lsi09G015020 vs. TAIR 10
Match: AT3G06600.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 9.3e-04
Identity = 60/216 (27.78%), Postives = 97/216 (44.91%), Query Frame = 0


Query: 3   KRMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPVSVVSDINQ 62
           KR+KD +   R  T  +R            ATFS +S +  +     DFSP+S +S    
Sbjct: 20  KRLKDPEMKNRKVTTEKRQ----------IATFSDVSFESTK--DPMDFSPISQIS--GA 79

Query: 63  IPDID-RSFLQGVNPAFSASCGTSLFPDLSL----SSVVSFDKVPVNFSGSNDDMDEASA 122
           I D +  S +QG      +S      P++ L    S V +   V      S+ D  ++  
Sbjct: 80  ISDSEAESVIQG------SSLDLMSTPEICLPADDSPVSTITSVEARIDTSSTDRIQS-- 139

Query: 123 GSVEVEIAVNSLRRALTQVLQSTDVDHQSKKLIDASMRIIVDDFLAIPQERDQIAQLISV 182
             V++  +V SLR  + ++          KKLI +     VD+      E + + ++++V
Sbjct: 140 -IVDLPASVQSLRGEINEL----------KKLICS-----VDN----SAEINWVDRVVTV 193

Query: 183 KNHVLSLCVFLWIIVLAIAFFFGSGVKSSFIGPLPT 214
           K  ++ L   LW I+ AI  FF SG + ++ GPLPT
Sbjct: 200 KFRIVLLSFILWAILAAIVVFFSSGEERAYRGPLPT 193

The following BLAST results are available for this feature:

BLAST of Lsi09G015020 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G015020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1Y8	8.1e-88	83.94	uncharacterized protein LOC103497781 OS=Cucumis melo OX=3656 GN=LOC103497781 PE=...	[more]
A0A5D3BTA3	8.1e-88	83.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1H5Y6	5.1e-82	79.36	uncharacterized protein LOC111460327 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KI59	2.1e-80	78.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327950 PE=4 SV=1	[more]
A0A6J1EQ83	8.9e-79	77.06	uncharacterized protein LOC111436822 OS=Cucurbita moschata OX=3662 GN=LOC1114368...	[more]

BLAST of Lsi09G015020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876305.1	6.1e-98	92.20	uncharacterized protein LOC120068561 [Benincasa hispida]	[more]
XP_008458341.1	1.7e-87	83.94	PREDICTED: uncharacterized protein LOC103497781 [Cucumis melo] >XP_016902243.1 P...	[more]
XP_022959315.1	1.0e-81	79.36	uncharacterized protein LOC111460327 isoform X1 [Cucurbita moschata]	[more]
KAG6575120.1	1.0e-81	78.92	hypothetical protein SDJN03_25759, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011657295.2	4.4e-80	78.44	uncharacterized protein LOC105435846 [Cucumis sativus] >KGN47662.2 hypothetical ...	[more]

BLAST of Lsi09G015020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06600.1	9.3e-04	27.78	unknown protein; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bact...	[more]
AT3G06600.2	9.3e-04	27.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G015020.1	Lsi09G015020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane