Lsi09G010890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G010890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein tesmin/TSO1-like CXC 2
Locationchr09: 17279793 .. 17281716 (+)
RNA-Seq ExpressionLsi09G010890
SyntenyLsi09G010890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGTATATGAGTTGTTTCTAGTTTTATTTTACTTTCTATAAATCATTAAGTTTTATAATTTATGATTTTCCTAAATAAATAATTAACCGTATGTTATCTATTAAAATATCTCTAGATATAAATTCGCCAAAATTCAAATTAGGCCCTCACACTTTTTGGTTAAGCTTAAATCATTCCATTGTTAATTAAAATAATTAGTTTTCTCAGTAATCTATAAATTGGGTTGATGCTTTTTTTTTCTCCTAAAAAGAAAAATTGGGTTGATGTTTTATTTAATTTCAATTTGTATATTTGGATTATTTATTGTTTTACAGTATTTTCTAACGAGATCCCAATGAAGATTTAGAATTATTTTAATTATTAACTATATTATTATTTTTTAATACACTTTTTTTTTGTTTGAATTTCAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGATAGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGGTATTAAATATATATTTTTACTCTGTTTTAAGTTTATAATTTTTTTGTTTACATTTTTATTCTTTTAAATTAATTAATAATTGATATTGATGCCAAGAATTCTTTTAAGAGGATACTATACCAAAGATTGAAAGTGAGATTTTTTTTTTAAAAAAAAATTAAGGCTGAAAACAAATCTTGAATTAGCTAGGGACTAAATTGAAACAAAATTCAAAATTCAATAGTAAAAATATAATATTTTAAAACTTAAAAGGCCAAATAGAAACTAGACCAACAACGGAGAGAAAAAAATGTATTTTTCCTTAATTTTTATTAATACGGTGAACCTTCAAATTTTCATAGTGTATCTTTTGAGAGGTAATTATTAAGTTAGTATAAATATTATTTTGACTATAATACTTTTGGTTTGACTTATTTTAATATATATATATATATATATATATATATATAACTTTTGTTCATTTTAATCTTTATACTTTTAAAAATTGAAATATCAATTTTGGTCTCTTCATAAAGTGACTAATTTTGTCAATTAATTTTTAATTTTATCTAAATTCTTTCGATACAAAATTTAGCATAACACTTCATTCAAAAGTTTCCATTACGTATAAAATATGTGAGAAAAATTTATAAATATAAATTAAAATAAACAGAACTCATGTTTCATAATCGAATTAAATGCAATTGGTTATTGATCTCACGATTTAAAGTATTAATTATAATAATGGGTTTTATTTATGGTAATTTTGTTTATGTACAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTACTGAGCTATCTGTTGAGGTAATTATGTGATTTACATAATTAAACACTTCATTTTATACAACAAATTAGGCAACAATTACCAATTAATTAAATTAAATGCAAATATATATATATACACACAATTATTATTATTTTTAGCTCCAAATTTAATTAGTTTCACATTTTTATTGCTCTATTTTTCATATTGCAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTAAGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGTCAAATTTTCTCTTTTCTTCTATCATCATCATCATCATCATCATCATCATCATCATCATCATCATATTAATAATATAATATTAATATGCAGGGAAAAGGAAAAAGTGGAAGATGGAAATAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA

mRNA sequence

ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGATAGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTACTGAGCTATCTGTTGAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTAAGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGGAAAAGGAAAAAGTGGAAGATGGAAATAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA

Coding sequence (CDS)

ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGATAGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTACTGAGCTATCTGTTGAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTAAGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGGAAAAGGAAAAAGTGGAAGATGGAAATAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA

Protein sequence

MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQSTWVLTNNGSDAENICTELSVEKNDSIVYQNSDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNNSPSRSTKRKREKEKVEDGNKARPRCNCKKSQCLKL
Homology
BLAST of Lsi09G010890 vs. ExPASy TrEMBL
Match: A0A1S3BY78 (protein tesmin/TSO1-like CXC 2 OS=Cucumis melo OX=3656 GN=LOC103494720 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 69/179 (38.55%), Postives = 94/179 (52.51%), Query Frame = 0

Query: 1   MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQS-- 60
           MSS+GLA+ST  E   +          NL    +L I   RALP++PPSS++ RGD S  
Sbjct: 1   MSSKGLATSTSSESEPI----------NL----ELTIGSGRALPSKPPSSIFSRGDHSQS 60

Query: 61  ----------TWVLTNNGSDAENICTELSVEKNDSIVYQNSDHVPYSNFVSNDKNENPNN 120
                          +N    +NIC  LSVEKND + Y N             KN+  NN
Sbjct: 61  NKNKEAPIGDNHSKISNFHKTQNICAGLSVEKNDGVEYHN-------------KNKKENN 120

Query: 121 DVRKNKQQMSSSDSVNDK--NNSPSRSTKRKREKEKVEDGNKARPRCNC--KKSQCLKL 164
           ++R +++Q S   S+ND   N++P+ +TKRK  K KVEDG KA P C+C  K ++CL L
Sbjct: 121 NIRDHQKQTSPIGSLNDMNYNSTPTTTTKRKSGKAKVEDGKKASPCCHCANKNTECLTL 152

BLAST of Lsi09G010890 vs. ExPASy TrEMBL
Match: A0A0A0KVD1 (CRC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G004800 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-05
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 77  SVEKNDSIVYQN-SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNN--SPSRS 136
           ++E N  I Y N +D +PY NF SN++ +NPN     + + +S   S N+ NN  + S S
Sbjct: 33  AIEINSDIEYSNWNDDIPYLNFQSNEEIQNPN-----DPEVVSLGVSTNEINNDGNSSGS 92

Query: 137 TKRKREKEKVEDGNKARP-RCNCKKSQCLKL 164
           TKRKR+K +VE+ N + P RCNCKKSQCLKL
Sbjct: 93  TKRKRKKSRVENENNSSPRRCNCKKSQCLKL 118

BLAST of Lsi09G010890 vs. NCBI nr
Match: XP_038878069.1 (protein tesmin/TSO1-like CXC 2 [Benincasa hispida])

HSP 1 Score: 157.5 bits (397), Expect = 9.6e-35
Identity = 103/180 (57.22%), Postives = 119/180 (66.11%), Query Frame = 0

Query: 1   MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRI-DCERALPTRPPSSMYPRGDQST 60
           MSS+ LASSTH EL   E+FDYMDLINNL HFDKLRI D ER+LPTRPPS+MY RGD + 
Sbjct: 1   MSSKHLASSTHSELRIFEEFDYMDLINNLHHFDKLRIDDSERSLPTRPPSTMYSRGDHAP 60

Query: 61  WVLTNNGS--------------DAENICTELSVEKNDSIVYQNSDHVPYSNFVSNDKNEN 120
              +N+                +  NIC EL VEKN+ + YQN D VPY NF S +KN N
Sbjct: 61  ---SNHREAAIGYDHFNMSYFHETRNICAELPVEKNEGVKYQNWDDVPYLNFESKNKNGN 120

Query: 121 PNNDVRKNKQQMSSSDSVNDKNNSPSRSTKRKREKEKVEDGNK--ARPRCNCKKSQCLKL 164
           PNNDVR N  QMSS  S +  NN    S+KRKREK KVE+ NK  + PRCNC KS+CL L
Sbjct: 121 PNNDVRNN--QMSSDVSTDSVNN--CSSSKRKREKSKVEEENKPISGPRCNCTKSECLDL 173

BLAST of Lsi09G010890 vs. NCBI nr
Match: XP_008454271.1 (PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-12
Identity = 69/179 (38.55%), Postives = 94/179 (52.51%), Query Frame = 0

Query: 1   MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQS-- 60
           MSS+GLA+ST  E   +          NL    +L I   RALP++PPSS++ RGD S  
Sbjct: 1   MSSKGLATSTSSESEPI----------NL----ELTIGSGRALPSKPPSSIFSRGDHSQS 60

Query: 61  ----------TWVLTNNGSDAENICTELSVEKNDSIVYQNSDHVPYSNFVSNDKNENPNN 120
                          +N    +NIC  LSVEKND + Y N             KN+  NN
Sbjct: 61  NKNKEAPIGDNHSKISNFHKTQNICAGLSVEKNDGVEYHN-------------KNKKENN 120

Query: 121 DVRKNKQQMSSSDSVNDK--NNSPSRSTKRKREKEKVEDGNKARPRCNC--KKSQCLKL 164
           ++R +++Q S   S+ND   N++P+ +TKRK  K KVEDG KA P C+C  K ++CL L
Sbjct: 121 NIRDHQKQTSPIGSLNDMNYNSTPTTTTKRKSGKAKVEDGKKASPCCHCANKNTECLTL 152

BLAST of Lsi09G010890 vs. NCBI nr
Match: KGN52869.1 (hypothetical protein Csa_014688 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-05
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 77  SVEKNDSIVYQN-SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNN--SPSRS 136
           ++E N  I Y N +D +PY NF SN++ +NPN     + + +S   S N+ NN  + S S
Sbjct: 33  AIEINSDIEYSNWNDDIPYLNFQSNEEIQNPN-----DPEVVSLGVSTNEINNDGNSSGS 92

Query: 137 TKRKREKEKVEDGNKARP-RCNCKKSQCLKL 164
           TKRKR+K +VE+ N + P RCNCKKSQCLKL
Sbjct: 93  TKRKRKKSRVENENNSSPRRCNCKKSQCLKL 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BY783.2e-1238.55protein tesmin/TSO1-like CXC 2 OS=Cucumis melo OX=3656 GN=LOC103494720 PE=3 SV=1[more]
A0A0A0KVD12.9e-0548.35CRC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G004800 PE=3 SV... [more]
Match NameE-valueIdentityDescription
XP_038878069.19.6e-3557.22protein tesmin/TSO1-like CXC 2 [Benincasa hispida][more]
XP_008454271.16.7e-1238.55PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo][more]
KGN52869.16.1e-0548.35hypothetical protein Csa_014688 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G010890.1Lsi09G010890.1mRNA