Lsi09G010880 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G010880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Tesmin/TSO1-like CXC domain-containing protein
Location	chr09: 17274222 .. 17275549 (+)
RNA-Seq Expression	Lsi09G010880
Synteny	Lsi09G010880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACACGGTTTGGATCCTCAGCAACAATAGAGAAGCTGCGATTGGTGATGATGAATGCAAGATCAGCCATTTCCATGAAACTAAAAATTTCTGTGATGAGCTGTCGGTCGAGGTTAATTAGATACAAATATATTATTATTATTAGTACCAAATTTAATTAGCTTTTACATTTTTTATTGCAAGAAAATAGTGGTGTTGATCAATATCAAAACTCAGATGTTTCATATTTGAGTTTCGAGTAAATGAATAAAAATGAAAATCTTAATAATGCCTTAAGAAATAATCATGTTAATAAATATATCATATATATCTTTTTATTTAGTGGAATATGTGAATTGTTTTTCTATATATAATGTGAATTTTTATGCTGCAGCAATCGGTGTCTTCGGACGTCTCTATAAATGAGATGATTAATAGTAATTAAAATTTCTCTTATGGAAAAAATTATTGATTTTTAATTTGAGTTTGAGAGGTGAAAATAAGTAGTTGATTCATAAAAATTGATATAATTATTATTTTTTTTATTTATCAAGATTTATATGAATTAATATGATATTGGGTGGTGTGCAACATACAGTAAGAAATCAAAAGTGGAAAATGGAAATAAAGTCAGCCCATGTTGCAATTGCAAAAAAAACGAGTGCCTAAAACTGTTAGTGAATGTATTTATATTTATAAGATTAATTAATTAATTAAAAGAATATATGAAAGCGTAACACATCTAATTATTGAAAGAAAAATAAAGGAAAGTATTTACACAAAATGGCAAAATTTTATGATAGTTGTGATATGTCTATTAATGATCGAAATGATAAAAGTCTATCAATGTCTATCCGTATTTTTTCTGCTATTTTTTATAAATCGTTTGACATTTTTTCTATTTTTGAAAATTTTCCTATAATCAATTATGGTATTGAAATTTTAAAAAAATAATATTGATATTTAAATTATGCAGATATTGTGAATGCTTTGCAAGTGGTATGTATTGCCGCAAGGATGTTTGTGGCAGTACAGATTGCTCTAATATTCCTTTGTATGAGGACACATTTGAGGCTGTAAAGCAAGAAATTCTATCCAAAAATCCCTCAGTTTTTTCTTCAAAAGAAGTTTGTAATTCTTTTCCATATACATATTATCATTTTAGTTGATATTATTTGTTTTAAAATATCTCCTTTGTTTTTAATTAATTTTGAAATGATGATTTATACGCAGGTACAAGAGGATGGGAGAACAAAAAAAACAACTTCATCTACAGAAAGAAGAGGATGCAAAAACAACTTCATCTACAGAAAGAAGAGGATGCAAGTGCAAGCAGTCAAAGTGTGA

mRNA sequence

ATGTACACGGTTTGGATCCTCAGCAACAATAGAGAAGCTGCGATTGGTGATGATGAATGCAAGATCAGCCATTTCCATGAAACTAAAAATTTCTGTGATGAGCTGTCGGTCGAGCAATCGGTGTCTTCGGACGTCTCTATAAATGAGATGATTAATAGTGAAAATAATAAGAAATCAAAAGTGGAAAATGGAAATAAAGTCAGCCCATGTTGCAATTGCAAAAAAAACGAGTGCCTAAAACTATATTGTGAATGCTTTGCAAGTGGTATGTATTGCCGCAAGGATGTTTGTGGCAGTACAGATTGCTCTAATATTCCTTTGTATGAGGACACATTTGAGGCTGTAAAGCAAGAAATTCTATCCAAAAATCCCTCAGTTTTTTCTTCAAAAGAAGTACAAGAGGATGGGAGAACAAAAAAAACAACTTCATCTACAGAAAGAAGAGGATGCAAAAACAACTTCATCTACAGAAAGAAGAGGATGCAAGTGCAAGCAGTCAAAGTGTGA

Coding sequence (CDS)

ATGTACACGGTTTGGATCCTCAGCAACAATAGAGAAGCTGCGATTGGTGATGATGAATGCAAGATCAGCCATTTCCATGAAACTAAAAATTTCTGTGATGAGCTGTCGGTCGAGCAATCGGTGTCTTCGGACGTCTCTATAAATGAGATGATTAATAGTGAAAATAATAAGAAATCAAAAGTGGAAAATGGAAATAAAGTCAGCCCATGTTGCAATTGCAAAAAAAACGAGTGCCTAAAACTATATTGTGAATGCTTTGCAAGTGGTATGTATTGCCGCAAGGATGTTTGTGGCAGTACAGATTGCTCTAATATTCCTTTGTATGAGGACACATTTGAGGCTGTAAAGCAAGAAATTCTATCCAAAAATCCCTCAGTTTTTTCTTCAAAAGAAGTACAAGAGGATGGGAGAACAAAAAAAACAACTTCATCTACAGAAAGAAGAGGATGCAAAAACAACTTCATCTACAGAAAGAAGAGGATGCAAGTGCAAGCAGTCAAAGTGTGA

Protein sequence

MYTVWILSNNREAAIGDDECKISHFHETKNFCDELSVEQSVSSDVSINEMINSENNKKSKVENGNKVSPCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTERRGCKNNFIYRKKRMQVQAVKV

Homology

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BLAST of Lsi09G010880 vs. ExPASy Swiss-Prot
Match: F4JIF5 (Protein tesmin/TSO1-like CXC 2 OS=Arabidopsis thaliana OX=3702 GN=TCX2 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-14
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 27  ETKNFCDELSVEQSVSSDVSINEM-INSENNKKSKVENGNKVS-PCCNCKKNECLKLYCE 86
           +T+N   E   +Q V  + ++ E+ ++S   K+ K+++G   S   CNCKK++CLKLYCE
Sbjct: 332 QTENEIRE-DADQDVPVEPALQELNLSSPKKKRVKLDSGEGESCKRCNCKKSKCLKLYCE 391

Query: 87  CFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK------EVQE--DG 146
           CFA+G+YC  + C   DC N P++ED   A +++I S+NP  F+ K       VQE  D 
Sbjct: 392 CFAAGVYC-IEPCSCIDCFNKPIHEDVVLATRKQIESRNPLAFAPKVIRNSDSVQETGDD 451

Query: 147 RTKKTTSSTERRGC 151
            +K   S+  +RGC
Sbjct: 452 ASKTPASARHKRGC 463

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BLAST of Lsi09G010880 vs. ExPASy Swiss-Prot
Match: Q9LUI3 (CRC domain-containing protein TSO1 OS=Arabidopsis thaliana OX=3702 GN=TSO1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-13
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 27  ETKNFCDELSVEQSVSSDVSINEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCE 86
           ET +  +   VE+   + V     + S   K  K E   +   C  CNCKK++CLKLYCE
Sbjct: 357 ETSDQAENEPVEEVPKALVFPELNLGSLKKKMRKSEQAGEGESCKRCNCKKSKCLKLYCE 416

Query: 87  CFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQ--------EDG 146
           CFA+G+YC  + C   DC N P++E+T  A +++I S+NP  F+ K ++         D 
Sbjct: 417 CFAAGVYC-IEPCSCIDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRNADSIMEASDD 476

Query: 147 RTKKTTSSTERRGC 151
            +K   S+  +RGC
Sbjct: 477 ASKTPASARHKRGC 489

[Close]

BLAST of Lsi09G010880 vs. ExPASy Swiss-Prot
Match: Q8L548 (Protein tesmin/TSO1-like CXC 3 OS=Arabidopsis thaliana OX=3702 GN=TCX3 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 51  INSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLY 110
           I+ +  ++   ++G   S C  CNCKK++CLKLYCECFA+G YC  + C   +C N P++
Sbjct: 308 ISPKKKRRKSEQSGEGDSSCKRCNCKKSKCLKLYCECFAAGFYC-IEPCSCINCFNKPIH 367

Query: 111 EDTFEAVKQEILSKNPSVFSSK---------EVQEDGRTKKTTSSTERRGC 151
           +D   A +++I S+NP  F+ K         EV ED  +K   S+  +RGC
Sbjct: 368 KDVVLATRKQIESRNPLAFAPKVIRNSDSIIEVGEDA-SKTPASARHKRGC 416

[Close]

BLAST of Lsi09G010880 vs. ExPASy Swiss-Prot
Match: F4JY84 (Protein tesmin/TSO1-like CXC 7 OS=Arabidopsis thaliana OX=3702 GN=TCX7 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.4e-09
Identity = 33/76 (43.42%), Postives = 41/76 (53.95%), Query Frame = 0


Query: 55  NNKKSKVENGNKVSPCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEA 114
           N  +SK    NK    CNCK ++CLKLYCECFASG YC  + C   +C N    E + + 
Sbjct: 81  NEVESKENTPNKQQKHCNCKNSKCLKLYCECFASGSYC--NGCNCVNCHNKLENESSRQV 140

Query: 115 VKQEILSKNPSVFSSK 131
               IL +NP  F  K
Sbjct: 141 AISGILERNPDAFKPK 154

[Close]

BLAST of Lsi09G010880 vs. ExPASy Swiss-Prot
Match: A1Z9E2 (Protein lin-54 homolog OS=Drosophila melanogaster OX=7227 GN=mip120 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-08
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 71  CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK 130
           CNC K++CLKLYC+CFA+G +C+   C   DC N   YE   E   +  L +NPS F  K
Sbjct: 741 CNCSKSQCLKLYCDCFANGEFCQD--CTCKDCFNNLDYEVERERAIRSCLDRNPSAFKPK 800

Query: 131 EV---QEDGRTKKTTSSTERRGCKNNF 155
                  D R      + +R GC  N+
Sbjct: 801 ITAPNSGDMRLHNKGCNCKRSGCLKNY 825

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BLAST of Lsi09G010880 vs. ExPASy TrEMBL
Match: A0A0A0KVD1 (CRC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G004800 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-20
Identity = 75/184 (40.76%), Postives = 97/184 (52.72%), Query Frame = 0


Query: 8   SNNREAAIGDDECKISHFHETK-NFCDELSVE---------------------------- 67
           ++NREA IGDD   +S+FHE+   F D  ++E                            
Sbjct: 4   NDNREAGIGDDHSNMSNFHESPVFFADPSAIEINSDIEYSNWNDDIPYLNFQSNEEIQNP 63

Query: 68  ---QSVSSDVSINEMINSENN--------KKSKVENGNKVSP-CCNCKKNECLKLYCECF 127
              + VS  VS NE+ N  N+        KKS+VEN N  SP  CNCKK++CLKLYCECF
Sbjct: 64  NDPEVVSLGVSTNEINNDGNSSGSTKRKRKKSRVENENNSSPRRCNCKKSQCLKLYCECF 123

Query: 128 ASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTE 151
           ASG +C ++     +C N P Y DT  A KQ++ +K  S F  + V+E G T   TSSTE
Sbjct: 124 ASGAFCNEECGCGENCFNNPRYLDTVVAAKQKLKTKKSSAFDRENVRE-GVTTTKTSSTE 183

[Close]

BLAST of Lsi09G010880 vs. ExPASy TrEMBL
Match: A0A1S3BY78 (protein tesmin/TSO1-like CXC 2 OS=Cucumis melo OX=3656 GN=LOC103494720 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 65/168 (38.69%), Postives = 87/168 (51.79%), Query Frame = 0


Query: 8   SNNREAAIGDDECKISHFHETKNFCDELSVEQS----------------------VSSDV 67
           + N+EA IGD+  KIS+FH+T+N C  LSVE++                       S   
Sbjct: 47  NKNKEAPIGDNHSKISNFHKTQNICAGLSVEKNDGVEYHNKNKKENNNIRDHQKQTSPIG 106

Query: 68  SINEM--------INSENNKKSKVENGNKVSPCCNC--KKNECLKLYCECFASGMYCRKD 127
           S+N+M             + K+KVE+G K SPCC+C  K  ECL L CECFA  M+C ++
Sbjct: 107 SLNDMNYNSTPTTTTKRKSGKAKVEDGKKASPCCHCANKNTECLTLDCECFAREMFCSEE 166

Query: 128 V-CGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTT 143
             C   DC N PLYEDT +  K++I S NPS F    V+      K+T
Sbjct: 167 CGCDDEDCFNTPLYEDTVDVAKEQIRSINPSAFDQNIVRGACNCHKST 214

[Close]

BLAST of Lsi09G010880 vs. ExPASy TrEMBL
Match: A0A1R3IDN5 (CRC domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_23979 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-15
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 0


Query: 6   ILSNNREAAIGDDECKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENN 65
           +L    +  +    CK++    ++  C   S+++ +         S     NEM+N E+ 
Sbjct: 406 VLDAPEDGTLEAKACKVASSATSETHCTVESLDRQITLYTKREPNSEHGENNEMLNQESP 465

Query: 66  KKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTF 125
           KK + ++ N      C  CNCKK +CLKLYC+CFA+G+YC  D C    C N P YEDT 
Sbjct: 466 KKKRQKSSNSTDSEGCKRCNCKKTKCLKLYCDCFAAGIYC-ADPCSCQGCFNRPEYEDTV 525

Query: 126 EAVKQEILSKNPSVFSSK------EVQEDGRTKKTTSSTERRGC 151
              +Q+I S+NP  F+ K      E QEDG  K  +S+  +RGC
Sbjct: 526 LETRQQIESRNPLAFAPKIVQPVNEFQEDGNGKTPSSARHKRGC 568

[Close]

BLAST of Lsi09G010880 vs. ExPASy TrEMBL
Match: A0A1R3J3U2 (CRC domain-containing protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_07791 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 0


Query: 20  CKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP- 79
           CK++    +++ C   S+++ +         S     NEM+N E+ KK + ++ N     
Sbjct: 87  CKVASSAASESHCTVESLDRQITLYTKREPSSEHGENNEMLNQESPKKKRQKSSNSTDSE 146

Query: 80  -C--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSV 139
            C  CNCKK++CLKLYC+CFA+G+YC  D C    C N P YEDT    +Q+I S+NP  
Sbjct: 147 GCKRCNCKKSKCLKLYCDCFAAGIYC-ADPCSCQGCFNRPEYEDTVLETRQQIESRNPLA 206

Query: 140 FSSKEVQ----------EDGRTKKTTSSTERRGC 151
           F+ K VQ          EDG  K  +S+  +RGC
Sbjct: 207 FAPKIVQPVNEFQVNNREDGNGKTPSSARHKRGC 239

[Close]

BLAST of Lsi09G010880 vs. ExPASy TrEMBL
Match: A0A5N6PNL7 (CRC domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_06400 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 0


Query: 13  AAIGDDECKISHFHETKNFCDELSVEQSVSSDVS----------INEMINSENNKKSKVE 72
           A++G  +  I++  +  +F +++   Q+V+ D S          +++   S   K+ + E
Sbjct: 395 ASMGSGQELIANMSDASSFENDMGPAQNVAEDGSKALGFVGNDELSQSQTSPRKKRRRAE 454

Query: 73  NGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEIL 132
           N      C  CNCKK++CLKLYCECFA+G+YC  + C   DC N P++EDT  A +++I 
Sbjct: 455 NAGDAEACKRCNCKKSKCLKLYCECFAAGVYC-VEPCACHDCFNKPIHEDTVLATRKQIE 514

Query: 133 SKNPSVF------SSKEVQEDGRTKKTTSSTERRGC 151
           S+NP  F      +S+ +QED  +    S+  +RGC
Sbjct: 515 SRNPLAFAPKVIKTSESMQEDESSNTPASARHKRGC 549

[Close]

BLAST of Lsi09G010880 vs. NCBI nr
Match: XP_038878069.1 (protein tesmin/TSO1-like CXC 2 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-27
Identity = 90/192 (46.88%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 8   SNNREAAIGDDECKISHFHETKNFCDELSVEQS--------------------------- 67
           SN+REAAIG D   +S+FHET+N C EL VE++                           
Sbjct: 61  SNHREAAIGYDHFNMSYFHETRNICAELPVEKNEGVKYQNWDDVPYLNFESKNKNGNPNN 120

Query: 68  ------VSSDVSINEMINSENNK----KSKVENGNK--VSPCCNCKKNECLKLYCECFAS 127
                 +SSDVS + + N  ++K    KSKVE  NK    P CNC K+ECL L CECF S
Sbjct: 121 DVRNNQMSSDVSTDSVNNCSSSKRKREKSKVEEENKPISGPRCNCTKSECLDLSCECFTS 180

Query: 128 GMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTERR 161
           GMYC +D CG TDC N  LYEDT E VKQ+ILS NPS F++K+V+E    K   SS+ERR
Sbjct: 181 GMYCGED-CGCTDCFNNRLYEDTVEVVKQQILSHNPSAFATKKVKE---RKTIASSSERR 240

[Close]

BLAST of Lsi09G010880 vs. NCBI nr
Match: KGN52869.1 (hypothetical protein Csa_014688 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 9.0e-20
Identity = 75/184 (40.76%), Postives = 97/184 (52.72%), Query Frame = 0


Query: 8   SNNREAAIGDDECKISHFHETK-NFCDELSVE---------------------------- 67
           ++NREA IGDD   +S+FHE+   F D  ++E                            
Sbjct: 4   NDNREAGIGDDHSNMSNFHESPVFFADPSAIEINSDIEYSNWNDDIPYLNFQSNEEIQNP 63

Query: 68  ---QSVSSDVSINEMINSENN--------KKSKVENGNKVSP-CCNCKKNECLKLYCECF 127
              + VS  VS NE+ N  N+        KKS+VEN N  SP  CNCKK++CLKLYCECF
Sbjct: 64  NDPEVVSLGVSTNEINNDGNSSGSTKRKRKKSRVENENNSSPRRCNCKKSQCLKLYCECF 123

Query: 128 ASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTE 151
           ASG +C ++     +C N P Y DT  A KQ++ +K  S F  + V+E G T   TSSTE
Sbjct: 124 ASGAFCNEECGCGENCFNNPRYLDTVVAAKQKLKTKKSSAFDRENVRE-GVTTTKTSSTE 183

[Close]

BLAST of Lsi09G010880 vs. NCBI nr
Match: XP_008454271.1 (PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 8.4e-18
Identity = 65/168 (38.69%), Postives = 87/168 (51.79%), Query Frame = 0


Query: 8   SNNREAAIGDDECKISHFHETKNFCDELSVEQS----------------------VSSDV 67
           + N+EA IGD+  KIS+FH+T+N C  LSVE++                       S   
Sbjct: 47  NKNKEAPIGDNHSKISNFHKTQNICAGLSVEKNDGVEYHNKNKKENNNIRDHQKQTSPIG 106

Query: 68  SINEM--------INSENNKKSKVENGNKVSPCCNC--KKNECLKLYCECFASGMYCRKD 127
           S+N+M             + K+KVE+G K SPCC+C  K  ECL L CECFA  M+C ++
Sbjct: 107 SLNDMNYNSTPTTTTKRKSGKAKVEDGKKASPCCHCANKNTECLTLDCECFAREMFCSEE 166

Query: 128 V-CGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTT 143
             C   DC N PLYEDT +  K++I S NPS F    V+      K+T
Sbjct: 167 CGCDDEDCFNTPLYEDTVDVAKEQIRSINPSAFDQNIVRGACNCHKST 214

[Close]

BLAST of Lsi09G010880 vs. NCBI nr
Match: OMO80693.1 (hypothetical protein COLO4_23979 [Corchorus olitorius])

HSP 1 Score: 92.4 bits (228), Expect = 3.9e-15
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 0


Query: 6   ILSNNREAAIGDDECKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENN 65
           +L    +  +    CK++    ++  C   S+++ +         S     NEM+N E+ 
Sbjct: 406 VLDAPEDGTLEAKACKVASSATSETHCTVESLDRQITLYTKREPNSEHGENNEMLNQESP 465

Query: 66  KKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTF 125
           KK + ++ N      C  CNCKK +CLKLYC+CFA+G+YC  D C    C N P YEDT 
Sbjct: 466 KKKRQKSSNSTDSEGCKRCNCKKTKCLKLYCDCFAAGIYC-ADPCSCQGCFNRPEYEDTV 525

Query: 126 EAVKQEILSKNPSVFSSK------EVQEDGRTKKTTSSTERRGC 151
              +Q+I S+NP  F+ K      E QEDG  K  +S+  +RGC
Sbjct: 526 LETRQQIESRNPLAFAPKIVQPVNEFQEDGNGKTPSSARHKRGC 568

[Close]

BLAST of Lsi09G010880 vs. NCBI nr
Match: OMO89502.1 (hypothetical protein CCACVL1_07791, partial [Corchorus capsularis])

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-14
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 0


Query: 20  CKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP- 79
           CK++    +++ C   S+++ +         S     NEM+N E+ KK + ++ N     
Sbjct: 87  CKVASSAASESHCTVESLDRQITLYTKREPSSEHGENNEMLNQESPKKKRQKSSNSTDSE 146

Query: 80  -C--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSV 139
            C  CNCKK++CLKLYC+CFA+G+YC  D C    C N P YEDT    +Q+I S+NP  
Sbjct: 147 GCKRCNCKKSKCLKLYCDCFAAGIYC-ADPCSCQGCFNRPEYEDTVLETRQQIESRNPLA 206

Query: 140 FSSKEVQ----------EDGRTKKTTSSTERRGC 151
           F+ K VQ          EDG  K  +S+  +RGC
Sbjct: 207 FAPKIVQPVNEFQVNNREDGNGKTPSSARHKRGC 239

[Close]

BLAST of Lsi09G010880 vs. TAIR 10
Match: AT4G14770.1 (TESMIN/TSO1-like CXC 2 )

HSP 1 Score: 78.6 bits (192), Expect = 5.4e-15
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 27  ETKNFCDELSVEQSVSSDVSINEM-INSENNKKSKVENGNKVS-PCCNCKKNECLKLYCE 86
           +T+N   E   +Q V  + ++ E+ ++S   K+ K+++G   S   CNCKK++CLKLYCE
Sbjct: 332 QTENEIRE-DADQDVPVEPALQELNLSSPKKKRVKLDSGEGESCKRCNCKKSKCLKLYCE 391

Query: 87  CFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK------EVQE--DG 146
           CFA+G+YC  + C   DC N P++ED   A +++I S+NP  F+ K       VQE  D 
Sbjct: 392 CFAAGVYC-IEPCSCIDCFNKPIHEDVVLATRKQIESRNPLAFAPKVIRNSDSVQETGDD 451

Query: 147 RTKKTTSSTERRGC 151
            +K   S+  +RGC
Sbjct: 452 ASKTPASARHKRGC 463

[Close]

BLAST of Lsi09G010880 vs. TAIR 10
Match: AT3G22780.1 (Tesmin/TSO1-like CXC domain-containing protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-14
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 27  ETKNFCDELSVEQSVSSDVSINEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCE 86
           ET +  +   VE+   + V     + S   K  K E   +   C  CNCKK++CLKLYCE
Sbjct: 357 ETSDQAENEPVEEVPKALVFPELNLGSLKKKMRKSEQAGEGESCKRCNCKKSKCLKLYCE 416

Query: 87  CFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQ--------EDG 146
           CFA+G+YC  + C   DC N P++E+T  A +++I S+NP  F+ K ++         D 
Sbjct: 417 CFAAGVYC-IEPCSCIDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRNADSIMEASDD 476

Query: 147 RTKKTTSSTERRGC 151
            +K   S+  +RGC
Sbjct: 477 ASKTPASARHKRGC 489

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BLAST of Lsi09G010880 vs. TAIR 10
Match: AT3G22760.1 (Tesmin/TSO1-like CXC domain-containing protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 51  INSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLY 110
           I+ +  ++   ++G   S C  CNCKK++CLKLYCECFA+G YC  + C   +C N P++
Sbjct: 308 ISPKKKRRKSEQSGEGDSSCKRCNCKKSKCLKLYCECFAAGFYC-IEPCSCINCFNKPIH 367

Query: 111 EDTFEAVKQEILSKNPSVFSSK---------EVQEDGRTKKTTSSTERRGC 151
           +D   A +++I S+NP  F+ K         EV ED  +K   S+  +RGC
Sbjct: 368 KDVVLATRKQIESRNPLAFAPKVIRNSDSIIEVGEDA-SKTPASARHKRGC 416

[Close]

BLAST of Lsi09G010880 vs. TAIR 10
Match: AT5G25790.1 (Tesmin/TSO1-like CXC domain-containing protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-10
Identity = 33/76 (43.42%), Postives = 41/76 (53.95%), Query Frame = 0


Query: 55  NNKKSKVENGNKVSPCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEA 114
           N  +SK    NK    CNCK ++CLKLYCECFASG YC  + C   +C N    E + + 
Sbjct: 81  NEVESKENTPNKQQKHCNCKNSKCLKLYCECFASGSYC--NGCNCVNCHNKLENESSRQV 140

Query: 115 VKQEILSKNPSVFSSK 131
               IL +NP  F  K
Sbjct: 141 AISGILERNPDAFKPK 154

[Close]

BLAST of Lsi09G010880 vs. TAIR 10
Match: AT3G04850.1 (Tesmin/TSO1-like CXC domain-containing protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 38  EQSVSSDVSINEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKD 97
           E+SV  +   ++++  EN + S  +  +++  C  C C+K++CLKLYCECF++G++C  +
Sbjct: 423 ERSVEGE-CFDQLMAMENRQLS--QGLDELGSCKRCKCRKSQCLKLYCECFSAGLFC-GE 482

Query: 98  VCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDG--------RTKKTTSSTER 151
            C   +C N P++ED     ++ I ++NP  F+ K V             +K   S+  +
Sbjct: 483 PCSCQNCFNKPIHEDLVMKSREVIKARNPLAFAPKVVSTSDTVIDLWVENSKTPASARHK 541

The following BLAST results are available for this feature:

BLAST of Lsi09G010880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIF5	7.7e-14	38.81	Protein tesmin/TSO1-like CXC 2 OS=Arabidopsis thaliana OX=3702 GN=TCX2 PE=1 SV=1	[more]
Q9LUI3	3.8e-13	35.82	CRC domain-containing protein TSO1 OS=Arabidopsis thaliana OX=3702 GN=TSO1 PE=1 ...	[more]
Q8L548	1.9e-12	38.74	Protein tesmin/TSO1-like CXC 3 OS=Arabidopsis thaliana OX=3702 GN=TCX3 PE=1 SV=1	[more]
F4JY84	7.4e-09	43.42	Protein tesmin/TSO1-like CXC 7 OS=Arabidopsis thaliana OX=3702 GN=TCX7 PE=1 SV=1	[more]
A1Z9E2	3.7e-08	39.08	Protein lin-54 homolog OS=Drosophila melanogaster OX=7227 GN=mip120 PE=1 SV=1	[more]

BLAST of Lsi09G010880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVD1	4.3e-20	40.76	CRC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G004800 PE=3 SV...	[more]
A0A1S3BY78	4.1e-18	38.69	protein tesmin/TSO1-like CXC 2 OS=Cucumis melo OX=3656 GN=LOC103494720 PE=3 SV=1	[more]
A0A1R3IDN5	1.9e-15	35.37	CRC domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_23979 PE=...	[more]
A0A1R3J3U2	1.6e-14	37.01	CRC domain-containing protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CC...	[more]
A0A5N6PNL7	2.1e-14	33.97	CRC domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_06400 PE=3...	[more]

BLAST of Lsi09G010880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878069.1	2.0e-27	46.88	protein tesmin/TSO1-like CXC 2 [Benincasa hispida]	[more]
KGN52869.1	9.0e-20	40.76	hypothetical protein Csa_014688 [Cucumis sativus]	[more]
XP_008454271.1	8.4e-18	38.69	PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo]	[more]
OMO80693.1	3.9e-15	35.37	hypothetical protein COLO4_23979 [Corchorus olitorius]	[more]
OMO89502.1	3.3e-14	37.01	hypothetical protein CCACVL1_07791, partial [Corchorus capsularis]	[more]

BLAST of Lsi09G010880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14770.1	5.4e-15	38.81	TESMIN/TSO1-like CXC 2	[more]
AT3G22780.1	2.7e-14	35.82	Tesmin/TSO1-like CXC domain-containing protein	[more]
AT3G22760.1	1.3e-13	38.74	Tesmin/TSO1-like CXC domain-containing protein	[more]
AT5G25790.1	5.3e-10	43.42	Tesmin/TSO1-like CXC domain-containing protein	[more]
AT3G04850.1	2.6e-09	30.89	Tesmin/TSO1-like CXC domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033467	Tesmin/TSO1-like CXC domain	SMART	SM01114	CXC_2	coord: 66..108 e-value: 5.0E-7 score: 39.3
IPR005172	CRC domain	PFAM	PF03638	TCR	coord: 70..104 e-value: 3.3E-9 score: 36.9
IPR005172	CRC domain	PROSITE	PS51634	CRC	coord: 67..168 score: 12.526585
IPR044522	CRC domain-containing protein TSO1-like	PANTHER	PTHR46159	PROTEIN TESMIN/TSO1-LIKE CXC 2	coord: 34..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G010880.1	Lsi09G010880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity