Lsi09G005670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G005670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ycf20-like protein
Location	chr09: 6107800 .. 6108267 (-)
RNA-Seq Expression	Lsi09G005670
Synteny	Lsi09G005670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACATTCTGCAAGTTTAGTCCATACTAGCCTCCTATATTATGGCTTTACTCCCAAAATGAATCCTTCATATTGGAGATATGATACGATTAAATCACGACCATCCCCTCGTAGTCTTCGTATCAAAGCTGTACAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCCCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTCACCGAGTATGTTACTCGATTTTATTACAGTCGACCGAAGGTAACTTTTCCCATTGCTCTACTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

ATGGCACATTCTGCAAGTTTAGTCCATACTAGCCTCCTATATTATGGCTTTACTCCCAAAATGAATCCTTCATATTGGAGATATGATACGATTAAATCACGACCATCCCCTCGTAGTCTTCGTATCAAAGCTGTACAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCCCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTCACCGAGTATGTTACTCGATTTTATTACAGTCGACCGAAGGTAACTTTTCCCATTGCTCTACTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCACATTCTGCAAGTTTAGTCCATACTAGCCTCCTATATTATGGCTTTACTCCCAAAATGAATCCTTCATATTGGAGATATGATACGATTAAATCACGACCATCCCCTCGTAGTCTTCGTATCAAAGCTGTACAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCCCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTCACCGAGTATGTTACTCGATTTTATTACAGTCGACCGAAGGTAACTTTTCCCATTGCTCTACTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

Homology

[Close]

BLAST of Lsi09G005670 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-09
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 60  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 119
           L+  L+   + S S     G ISLL GF+++  +S   G  G   +IAA + V  TE  +
Sbjct: 13  LIKNLNNKLYYSLSELTT-GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTS 72

Query: 120 RFYYSRPK-VTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           +  YS  K +   I L NNFK+G TYGLF+DAFKL S
Sbjct: 73  KIVYSSHKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Lsi09G005670 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 53  RLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCV 112
           RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 113 LLTEYVTRFYYSR--PKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Lsi09G005670 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-08
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    I LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
            K+G TYGLF+DAFKL S
Sbjct: 91  LKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Lsi09G005670 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-04
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 83  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR----PKVTFPIALL--- 142
           LL GF++A  ++  FG  G  DV+ A + V + E +    YS+     K  F I+ L   
Sbjct: 35  LLLGFFIATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLI 94

Query: 143 --NNFKMGFTYGLFIDAFKLAS 156
             N  K+G  +GLF+DAFKL S
Sbjct: 95  GINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of Lsi09G005670 vs. ExPASy TrEMBL
Match: A0A0A0KPS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.7e-76
Identity = 149/156 (95.51%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIR 60
           MA SASLVHTSLL YGFTPKMNPSYWRYD +KSRPS PRS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Lsi09G005670 vs. ExPASy TrEMBL
Match: A0A6J1I440 (uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.0e-73
Identity = 144/155 (92.90%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. ExPASy TrEMBL
Match: A0A6J1ESY7 (uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.1e-73
Identity = 144/155 (92.90%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. ExPASy TrEMBL
Match: A0A1S3CT33 (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72
Identity = 144/156 (92.31%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIR 60
           MA S SLVHT LL YGF+ KMN SYWRYD +KSRPS PRS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Lsi09G005670 vs. ExPASy TrEMBL
Match: A0A5D3BMH1 (Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00540 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.3e-66
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 21  MNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFG 80
           MNPSYWRYD +KSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFG
Sbjct: 1   MNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFG 60

Query: 81  GISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFK 140
           GISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFK
Sbjct: 61  GISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFK 120

Query: 141 MGFTYGLFIDAFKLAS 156
           MGFTYGLFIDAFKLAS
Sbjct: 121 MGFTYGLFIDAFKLAS 136

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: XP_004143642.1 (uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein Csa_000018 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 1.4e-75
Identity = 149/156 (95.51%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIR 60
           MA SASLVHTSLL YGFTPKMNPSYWRYD +KSRPS PRS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 144/155 (92.90%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: XP_022928979.1 (uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacterized protein ycf20 [Cucurbita moschata])

HSP 1 Score: 282.7 bits (722), Expect = 1.9e-72
Identity = 144/155 (92.90%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: XP_023549885.1 (uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: KAG6579671.1 (hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.6 bits (719), Expect = 4.2e-72
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-52
Identity = 114/161 (70.81%), Postives = 124/161 (77.02%), Query Frame = 0


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLR----IKAVQDTGG--PRRL 60
           MAHS S + T+L           S   + T  S P  R  R    I+A+Q+T G  PRRL
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQS---FGTFVSSPFKRKRRFARSIRALQETEGPTPRRL 60

Query: 61  VDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLL 120
           +DIIR VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLL
Sbjct: 61  IDIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLL 120

Query: 121 TEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           TEYVTRFYYSR  VTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 TEYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]

BLAST of Lsi09G005670 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 43.5 bits (101), Expect = 1.8e-04
Identity = 28/80 (35.00%), Postives = 39/80 (48.75%), Query Frame = 0


Query: 83  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPIALL 142
           LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   +  +
Sbjct: 118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177

Query: 143 NNFKMGFTYGLFIDAFKLAS 156
           N +K G   GLF+DAFKL S
Sbjct: 178 NFWKAGVCLGLFVDAFKLGS 197

The following BLAST results are available for this feature:

BLAST of Lsi09G005670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1XDS2	5.2e-09	42.27	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P72983	2.6e-08	35.24	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P51214	5.8e-08	47.44	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
Q9MUL5	3.0e-04	37.80	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]

BLAST of Lsi09G005670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS1	6.7e-76	95.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1	[more]
A0A6J1I440	7.0e-73	92.90	uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 S...	[more]
A0A6J1ESY7	9.1e-73	92.90	uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3...	[more]
A0A1S3CT33	2.0e-72	92.31	uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644...	[more]
A0A5D3BMH1	8.3e-66	96.32	Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Lsi09G005670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143642.1	1.4e-75	95.51	uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein...	[more]
XP_022969949.1	1.4e-72	92.90	uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized...	[more]
XP_022928979.1	1.9e-72	92.90	uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacteriz...	[more]
XP_023549885.1	3.2e-72	92.26	uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886....	[more]
KAG6579671.1	4.2e-72	92.26	hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi09G005670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43050.1	1.8e-52	70.81	Protein of unknown function (DUF565)	[more]
AT1G65420.1	1.8e-04	35.00	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 101..155 e-value: 1.4E-18 score: 67.1
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..155
None	No IPR available	PANTHER	PTHR33787:SF5	YCF20-LIKE PROTEIN	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G005670.1	Lsi09G005670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane