Lsi08G016700 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G016700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Location	chr08: 24455263 .. 24457481 (-)
RNA-Seq Expression	Lsi08G016700
Synteny	Lsi08G016700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGATTTAAAAAAGAAATACCGAAGGTGAAATTGCGTGGGTTGTGCAGAAAGAAAGCGAAGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGGTGAGCCATGGAGAACCATATTCAATATTGAGTTTCAGCCTCTTCTGAGAATTGCATTCTCCAATTAGGTTTATATCTTTTCAGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTTTACAGGCAGACTATTCAGAAGGGTAAGAAAGTAACACTCTACTTCTTCAATTCCGTCTTGATTTTTGAAGTTTGCTCGTTACTAGACAATGCTATGGAGATGCTAATGCTTTTATTTTTCCTGTATTAGGGATGCACTTGATGCACTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGTAATCCTTCTCTCCCTCCTTCTTTACATTCATGCACGAATTGTTTGATTGTTGATGTGCACTTTTGCCTCCTAGTTCTATTTTTCGCTGCCCTTTTACAGTTTAATCACTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGGTGGGGAACAAGTTTTCTGCTTGTTCATGTGCAGGAGTCAGCATTGGCGTTTACTTAACTATGGAAACATTCAGTGCCCGACTCGAGTGGAGCTATGTCTTGGTGTCCCGGTTTGTTTAATTATTGTTTTATACGAACCTAAGTATTTAATCTTCCGAGTGTTTACTAGTTTTTAGGAGTTACATATCAGAACTGTGTACTATTTATTTTCATGTTGAAGTTGGTTAGAAAGAAAGGATGTGGTTAGTTATGCTGGGAAGGATTTCCGTTCTCTTAACTGGCTTTGTGGAATGCAGTCTATACCTGCGTTAATGCATCTACAAACCAATTAACACAACTATGATCAGATGTTTATACTGCGTCATTTGTTCTAAATTATTATGTTTTTTGGTTTCTCAATGTTGATTAATGGATGTGAAAGTCATTTGACAAAAGCACGAAAGGATGCTTTGCTCAAAACTCAAAAGAGCTTTAGTTTGACCTGTATATTGTTTCCCCTATTCTTTTGACACGGGAATTATTTTGAACCTTTTCTTTGATCAATAACATATTTTGCATTCTGTTAGAAATATGAAAAGAATTTGTAAAGTCCGATTTAGTCTTACAGCTATCCTTTAGGTTTTGTTGTTTGATAGGACATCTGACTTGGAAATTATCTCTAGACTAAACTTTCAAGGATGTCATTAGAAGGGATCATTCTCTCTGTGTTTGACGTTGTTCCATATATTGCATTCTTTGGGTGATAACTCGCGTCATCTGCAGTAGCCTAGAATCATATTGATAGTGTTCCAATGCCCACTACTGAAACAAAGGGTTTGTTTTGCAATTGTTTTTAGAAGTTAGAACGGGGTTTTTGTTTCTCAGAATAGAATTTTGTAATGGCATGAATTGAAGTGATCTACTGACGAATGATTTGTCATACCCTGATCGTTAAAAATCGACTGAATAGTGACTTTGAAGGCAGTCGCCAATTACCATTTTATATTTTTATGCATCTTTAGTGGGAGGAAGGGGTTCTTTCAACCAACTCAAGTAGTATCATGTTTTGCACATTTGCTGCAAGTCCAACTTATAATATATGCCAACAGCAAGGGTATAACTGAAAATTATTAAAACATAATAAACTTATTTGAAAATTTTCAAACATAACATTAGGGACTAAAACATATGTTTAGACAAAAAAATACTTTCCTCTCTCCCAGGATCTGGGTTATCGTTCATAATGCCATTTCTGCTCAACATGCACTGTATTGATTCAAAGTGGTCATAAGCCCAAATCCAGTTGCCCCACTTTATGATTAACCGAATGGTGAGATTTGGTCGTGTCCAGAGTTCATTTAGACATGGATTTGGTGGAAGGCAAAGTGGTGGTTATATAGTCACGAGATTAAAATTTGATGAGGATGTCCGAGTTGTAAGGAATTTGAAAGAAAAAAAACCCTCATGTGAAGGAGTGAAGAATGCAGCAGTTTGATTAAAGAACCTTGAGATGTAGTTGTAGAGTTGGGAACAAGAAGAAGGGAAGGTGCCGGTCGCCGGATGTGGCATCTTCTCGATCTCATGAATGGAGAGTCTACTTTGAAATCGCTTGCCTTGCACCTACCGTTGAGTACTTTGTCTGA

mRNA sequence

AAAAAAGATTTAAAAAAGAAATACCGAAGGTGAAATTGCGTGGGTTGTGCAGAAAGAAAGCGAAGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTTTACAGGCAGACTATTCAGAAGGGGATGCACTTGATGCACTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGAGTCAGCATTGGCGTTTACTTAACTATGGAAACATTCAGTGCCCGACTCGAGTGGAGCTATGTCTTGGTGTCCCGAGTTGGGAACAAGAAGAAGGGAAGGTGCCGGTCGCCGGATGTGGCATCTTCTCGATCTCATGAATGGAGAGTCTACTTTGAAATCGCTTGCCTTGCACCTACCGTTGAGTACTTTGTCTGA

Coding sequence (CDS)

ATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTTTACAGGCAGACTATTCAGAAGGGGATGCACTTGATGCACTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGAGTCAGCATTGGCGTTTACTTAACTATGGAAACATTCAGTGCCCGACTCGAGTGGAGCTATGTCTTGGTGTCCCGAGTTGGGAACAAGAAGAAGGGAAGGTGCCGGTCGCCGGATGTGGCATCTTCTCGATCTCATGAATGGAGAGTCTACTTTGAAATCGCTTGCCTTGCACCTACCGTTGAGTACTTTGTCTGA

Protein sequence

MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNRVSIGVYLTMETFSARLEWSYVLVSRVGNKKKGRCRSPDVASSRSHEWRVYFEIACLAPTVEYFV

Homology

[Close]

BLAST of Lsi08G016700 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.9e-30
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.9e-30
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.0e-27
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60

Query: 61 NY 63
          NY
Sbjct: 61 NY 62

[Close]

BLAST of Lsi08G016700 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-26
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 61 NY 63
          NY
Sbjct: 61 NY 62

[Close]

BLAST of Lsi08G016700 vs. ExPASy TrEMBL
Match: A0A5N5MBL4 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_009768 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 68/87 (78.16%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNRVSIGVYLTMETFSARLEWSYVLV 88
          NYNR   G  L   T + R + S  +V
Sbjct: 61 NYNRGMEGALLVFITLNDRRKSSLTIV 87

[Close]

BLAST of Lsi08G016700 vs. ExPASy TrEMBL
Match: A0A0R0L5R6 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_01G029400 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.7e-30
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ+DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNRVSIGVYLTMETF 77
          NYN  S  +Y T   F
Sbjct: 61 NYNSNSCSLYYTFRVF 76

[Close]

BLAST of Lsi08G016700 vs. ExPASy TrEMBL
Match: A0A5A7UPU3 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00170 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.0e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. ExPASy TrEMBL
Match: A0A6J1KEH3 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492503 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.0e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. ExPASy TrEMBL
Match: A0A6J1KRF4 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucurbita maxima OX=3661 GN=LOC111496538 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.0e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. NCBI nr
Match: KAB5552457.1 (hypothetical protein DKX38_009768 [Salix brachista])

HSP 1 Score: 142.1 bits (357), Expect = 3.3e-30
Identity = 68/87 (78.16%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNRVSIGVYLTMETFSARLEWSYVLV 88
          NYNR   G  L   T + R + S  +V
Sbjct: 61 NYNRGMEGALLVFITLNDRRKSSLTIV 87

[Close]

BLAST of Lsi08G016700 vs. NCBI nr
Match: XP_004138685.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP_008456558.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo] >XP_022132211.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Momordica charantia] >XP_022951011.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita moschata] >XP_023002779.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita maxima] >XP_038884312.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >XP_038885728.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >KAG6585165.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020085.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita argyrosperma subsp. argyrosperma] >KGN63029.1 hypothetical protein Csa_022113 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. NCBI nr
Match: KAA0057130.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa] >TYJ97111.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. NCBI nr
Match: KAG6598222.1 (DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. NCBI nr
Match: XP_022961651.1 (DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata] >XP_022997628.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita maxima] >XP_023545653.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-31
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Lsi08G016700 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 131.0 bits (328), Expect = 7.0e-31
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

The following BLAST results are available for this feature:

BLAST of Lsi08G016700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	2.0e-30	93.65	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q8LFJ6	9.9e-30	93.65	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q39290	9.9e-30	93.65	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q55AB6	6.0e-27	88.71	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium disc...	[more]
Q32P78	1.0e-26	83.87	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913...	[more]

BLAST of Lsi08G016700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5MBL4	1.6e-30	78.16	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_009768 PE=3 SV=1	[more]
A0A0R0L5R6	2.7e-30	85.53	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_01G029400 PE=3 SV=1	[more]
A0A5A7UPU3	6.0e-30	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. ...	[more]
A0A6J1KEH3	6.0e-30	100.00	DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1KRF4	6.0e-30	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucurbita maxima O...	[more]

BLAST of Lsi08G016700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB5552457.1	3.3e-30	78.16	hypothetical protein DKX38_009768 [Salix brachista]	[more]
XP_004138685.1	1.2e-29	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP...	[more]
KAA0057130.1	1.2e-29	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. ma...	[more]
KAG6598222.1	1.2e-29	100.00	DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosp...	[more]
XP_022961651.1	1.2e-29	100.00	DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata] >XP_022...	[more]

BLAST of Lsi08G016700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	1.4e-31	93.65	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	7.0e-31	93.65	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 1..59 e-value: 2.6E-31 score: 107.7
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 1..65
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	HAMAP	MF_00250	RNApol_arch_N	coord: 1..63 score: 19.33688
None	No IPR available	GENE3D	1.10.10.60		coord: 1..66 e-value: 7.4E-39 score: 133.7
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 1..65
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 2..11
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G016700.1	Lsi08G016700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0042797	tRNA transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding