Lsi08G014510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G014510
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsuccinate dehydrogenase subunit 5, mitochondrial-like
Locationchr08: 22697461 .. 22699490 (+)
RNA-Seq ExpressionLsi08G014510
SyntenyLsi08G014510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCGGCCCAAAATCATATAAAACAAGAAATTGAAGGAGGCGCTCCTCTGAAATTGCATATTTTACTCTTTCATTTTCCTTTCCCGTCATTTCGAACAGCCTCAGGCCTCTGAGTTAGCTTTCAATTTTGCAGTTTCAAGGAAAAAGGGAAAGTAATCGAGAAAATGGTGATTCTTAGATCACTATTGCGTTCTGTTCGCGCCAGATCTTACGCCATCGCCGGAGTCGCACATCGGAATTTACTGCAAAGTAACCATCAGGCTGCCCGAAGTTTCTTCTATCTGTCGTCCCATCGTTCTTCTTTCTCAGATTCTCCACAGAGAGTTTCTTCTGGTACGCCTTCTAATTAATTATTATTATTATTTATAGATTTAAATCTCAACTGATTAATTTTGGAAAGAAGCGGAATTTCCGCTGAAGCTATTCGCTATTCTTTATTCAACTTAATTAATGTTAGCTATTGAGTTTTTTCTCAGTTGATTGCTGATATGCTTGTGTGTTACTGGTGATTAGTTAAATGTATGGTTCTTCTTCCATGAGGTACACGTACATATGTAGTTCTTCCAATTTAAAATTTTGCTTGCCGTATTTGTAAAGTAAATTGCTACATTCTTTTCTGTATTAGTATTTATCATCAAGTCAATTGTGCGACGAGTCTTCATAGTGCGTGCAATGTGCAATTTGTGGTAAATTTTGTAGTAAAATGCCAAGTTTCTCCTTATTGTTACTTTAAAGCAATGCCTTTGTCTCAAAGAATTGTAACAAAATCAATCTCGTATTCTTTTCATAAATTCCAATGAAAAGTTCTGTTTCCCAGAAAAAAAAATAAAAAATCAATCTCGTATTGGAGACCAAGGAATATCAACTAAATTTTTAAAATTCATTTACCATTGTATTTCATTGTTTCTGCTCGCCACGGCGATCTGAAGTGTATGGACAGTGTAGATACAATCAATTTAATTTTTATTTCAGTATTAATGTTTGAAAATATGTCATTTCCTGTCTCTTCTGGTAAATTTCTGCAGATTGTAGCTATATATCTGGTGTAAGCCACGCTAGATTTTTTAGCGCTGATGTTGTTAGTATGCCTACAATTGGAGATTCCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGAAAGTTGGGATAAGCTTCCTGAGTCTGTTGTCTATGATGTAAAGGCTGCGTTATCTGGAAGCACTGATGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCCGCGCAGCTGAAGCAGTTGAGGAGTTTGGTGATATACTTATCAGCATGAAGATGGAGATTGATGACAGCATTGGTCTCAGTGGCGAGGTATTGGAATTTTAAATTTATCAATTTAAATTATTTTTTGCCCGTTGTTTATAAAGTAAAAACTTCTGAGTCAATCTGCAGGATGTTAAGCCTTTGTCCGATGAGCTTAAGAATGCACTACGTACAGTTCATGATCGCTATACGGCCTACTTGGATTCATTTGGTCCTGAGGAAAACTATCTGCGGAAGAAAGTGGAAACAGAGTTAGGAACAAAGATGATATACTTAAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTAAAAAGCCTCTCTGCTATGTAGTTTGTTAGTTGCTATTTCAAACATTTAAGTTGGTGAAATAAATCTAGCCCATTAGGCAATTTCTGCTGTAGAATTGCCGTCTTAGAATCCTGACACCATTGCATTATAAAAGAGTGGAGTCTTTTGATCACCATATGTTAATTTTAAATTGGAAAGGAAGCTTATATGTGAACATTGGGCTAGGAGTTCGGTGACTCATCCCTTTTTACTTTTCTAAGCACTGCAGATTAATACATGTTCAGCTACAATAATATTTTATCATATCCTTGCTTTGGAAAGAGTTCACGCTTCTGTTATTATAATAAATGAGTTTAATTGTTTGGTTCATGTCTTCTCTTTTATTTTACAACAGGTTTCTGTGCTGGGAACCTCTGGTCTATCGGGGTCATATGTTGAGCAAAGAGCATAA

mRNA sequence

TTTCGGCCCAAAATCATATAAAACAAGAAATTGAAGGAGGCGCTCCTCTGAAATTGCATATTTTACTCTTTCATTTTCCTTTCCCGTCATTTCGAACAGCCTCAGGCCTCTGAGTTAGCTTTCAATTTTGCAGTTTCAAGGAAAAAGGGAAAGTAATCGAGAAAATGGTGATTCTTAGATCACTATTGCGTTCTGTTCGCGCCAGATCTTACGCCATCGCCGGAGTCGCACATCGGAATTTACTGCAAAGTAACCATCAGGCTGCCCGAAGTTTCTTCTATCTGTCGTCCCATCGTTCTTCTTTCTCAGATTCTCCACAGAGAGTTTCTTCTGATTGTAGCTATATATCTGGTGTAAGCCACGCTAGATTTTTTAGCGCTGATGTTGTTAGTATGCCTACAATTGGAGATTCCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGAAAGTTGGGATAAGCTTCCTGAGTCTGTTGTCTATGATGTAAAGGCTGCGTTATCTGGAAGCACTGATGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCCGCGCAGCTGAAGCAGTTGAGGAGTTTGGTGATATACTTATCAGCATGAAGATGGAGATTGATGACAGCATTGGTCTCAGTGGCGAGGATGTTAAGCCTTTGTCCGATGAGCTTAAGAATGCACTACGTACAGTTCATGATCGCTATACGGCCTACTTGGATTCATTTGGTCCTGAGGAAAACTATCTGCGGAAGAAAGTGGAAACAGAGTTAGGAACAAAGATGATATACTTAAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCGGGGTCATATGTTGAGCAAAGAGCATAA

Coding sequence (CDS)

ATGGTGATTCTTAGATCACTATTGCGTTCTGTTCGCGCCAGATCTTACGCCATCGCCGGAGTCGCACATCGGAATTTACTGCAAAGTAACCATCAGGCTGCCCGAAGTTTCTTCTATCTGTCGTCCCATCGTTCTTCTTTCTCAGATTCTCCACAGAGAGTTTCTTCTGATTGTAGCTATATATCTGGTGTAAGCCACGCTAGATTTTTTAGCGCTGATGTTGTTAGTATGCCTACAATTGGAGATTCCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGAAAGTTGGGATAAGCTTCCTGAGTCTGTTGTCTATGATGTAAAGGCTGCGTTATCTGGAAGCACTGATGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCCGCGCAGCTGAAGCAGTTGAGGAGTTTGGTGATATACTTATCAGCATGAAGATGGAGATTGATGACAGCATTGGTCTCAGTGGCGAGGATGTTAAGCCTTTGTCCGATGAGCTTAAGAATGCACTACGTACAGTTCATGATCGCTATACGGCCTACTTGGATTCATTTGGTCCTGAGGAAAACTATCTGCGGAAGAAAGTGGAAACAGAGTTAGGAACAAAGATGATATACTTAAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCGGGGTCATATGTTGAGCAAAGAGCATAA

Protein sequence

MVILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSSDCSYISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDKAGKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYTAYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Homology
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BLAST of Lsi08G014510 vs. ExPASy Swiss-Prot
Match: Q9SX77 (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.1e-64
Identity = 141/247 (57.09%), Postives = 168/247 (68.02%), Query Frame = 0 

Query: 12  RARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQ------------------R 71
           R R  A A     +LLQ +H   +   +LS HR+  + +P                    
Sbjct: 14  RIRGTAQAQARVGSLLQGSHHIEK---HLSRHRTLITVAPNASVIGDVQINKGSFISYAS 73

Query: 72  VSSDCSY--ISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAA 131
           VS D  Y    G+   R FS DV  MP + DS + NAFKDLMA  W +LP +VV D K A
Sbjct: 74  VSRDLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTA 133

Query: 132 LSGSTDDKAGKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNAL 191
           +S +TDDKAG+E ++NVFRAAEAVEEFG IL S+KMEIDDSIG+SGE VKPL +++ +AL
Sbjct: 134 ISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDAL 193

Query: 192 RTVHDRYTAYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSG 239
           RT + RY  YLDSF PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSG
Sbjct: 194 RTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSG 253

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BLAST of Lsi08G014510 vs. ExPASy Swiss-Prot
Match: Q0JDA2 (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.4e-55
Identity = 113/223 (50.67%), Postives = 163/223 (73.09%), Query Frame = 0 

Query: 22  AHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSSDCSYISGVSHA------RFFSADVV 81
           A R LL+ +  A  +    SS  ++ +   + +++  + +SG ++A      R FS++  
Sbjct: 11  AARRLLRISPAALSTLTAASSRPAAVAPLARPIAA--AAVSGGNNAFSWNLRRLFSSNEK 70

Query: 82  SMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDKAGKEIVENVFRAAEAV 141
            +P I D ++++AFKDLMA SW  LP+S+V + K A S +TDDKAGKE + NVFRAAEA 
Sbjct: 71  HLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLNVFRAAEAC 130

Query: 142 EEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYTAYLDSFGPEENYLRKK 201
           EEFG +L++++M +DD  G++GE+V PL   +++A+++ + RY  YL+SFGPEENYLRKK
Sbjct: 131 EEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGPEENYLRKK 190

Query: 202 VETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           VE ELGTKMI+LKMRCSG+GSEWGK++++GTSG+SGSYVE RA
Sbjct: 191 VENELGTKMIHLKMRCSGVGSEWGKITLIGTSGISGSYVELRA 231

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BLAST of Lsi08G014510 vs. ExPASy TrEMBL
Match: A0A0A0LP60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360050 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 6.2e-113
Identity = 214/237 (90.30%), Postives = 222/237 (93.67%), Query Frame = 0 

Query: 2   VILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSSDCSYI 61
           VILRSLLRSVRARSY IAGV HRNLLQSNHQ ARSFFYLSSHR SFSDSPQRVSSDCSY 
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSSDCSYP 64

Query: 62  SGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDKAG 121
           SGV HAR+FSADVVSMPTI D KLQN FKDLMA SWDKLPE+V+YDVK ALSGSTDDKAG
Sbjct: 65  SGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTDDKAG 124

Query: 122 KEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYTAY 181
           KEIVENVFRAAEA EEFGD+LI++KMEIDDSIGLSGE+VKPLSDELK AL TVH+RY AY
Sbjct: 125 KEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHERYIAY 184

Query: 182 LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

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BLAST of Lsi08G014510 vs. ExPASy TrEMBL
Match: A0A6J1HCU3 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111462814 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.2e-111
Identity = 213/239 (89.12%), Postives = 227/239 (94.98%), Query Frame = 0 

Query: 1   MVILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSS-DCS 60
           MVILRSLLRSVRARSY IAGV HRNLLQS+HQAARSFF LSSHRSSFSD P RVSS DC 
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFPPRVSSADCG 60

Query: 61  YISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDK 120
           Y+SGV+HARFFS DVV+MPTIGD+KLQNAFKDLMA SWD LPESVVYDVKAALSGST+DK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYT 180
           AGKEIVENVFRAAEA E+FGDIL+++KMEIDDSIG+SGEDVKPLSDELK AL+TV+DRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           AYLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Lsi08G014510 vs. ExPASy TrEMBL
Match: A0A6J1KAU4 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111491709 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.4e-109
Identity = 210/239 (87.87%), Postives = 225/239 (94.14%), Query Frame = 0 

Query: 1   MVILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSS-DCS 60
           MVILRSLLRSVRARSY IAGV HRNLL+S+H AARSFF L SHRSSFSD P RVSS DC 
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCG 60

Query: 61  YISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDK 120
           Y+SGV+HARFFS DVV+MPTIGD+KLQNAFKDLMA SWD LPESVVYDVKAALSGST+DK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYT 180
           AGKEIVENVFRAAEA E+FGDILI++KMEIDDSIG+SGEDVKPLSDELK AL+TV+DRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           AYLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGK+SVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Lsi08G014510 vs. ExPASy TrEMBL
Match: A0A6J1C282 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007602 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 9.3e-109
Identity = 208/238 (87.39%), Postives = 218/238 (91.60%), Query Frame = 0 

Query: 1   MVILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSSDCSY 60
           MVILRSLLRSVR  SY +AGV HRNLLQS+HQAARSFFYLSSHRSS SD PQRVSSDC Y
Sbjct: 4   MVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSDCCY 63

Query: 61  ISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDKA 120
           +SGV  AR FS DVV M TI DSKLQN FKDLMA SWD+LP SVVYDVKAALSGSTDDKA
Sbjct: 64  LSGVGRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTDDKA 123

Query: 121 GKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYTA 180
           GKE+VENVFRAAEAVEEFG ILIS+KM+IDDSIGLSGEDVKPLSDELKNAL TVHDRYT 
Sbjct: 124 GKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDRYTT 183

Query: 181 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           YLD+FGPEENYLRKKVET+LGTKMIYLK+RCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 184 YLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]
BLAST of Lsi08G014510 vs. ExPASy TrEMBL
Match: A0A1S3BAR6 (succinate dehydrogenase subunit 5, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103487909 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.2e-108
Identity = 209/237 (88.19%), Postives = 215/237 (90.72%), Query Frame = 0 

Query: 2   VILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSSDCSYI 61
           VILRSLLRSVRARSY IAGV HRNLLQSNHQ ARS FYLSSHRSSFSDSPQRVS DCSY 
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSVFYLSSHRSSFSDSPQRVSYDCSYP 64

Query: 62  SGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDKAG 121
           SGV HAR+FSADVVSMP I D KL   FKDLMA SWDKLPE V+Y+ K ALSGSTDDKAG
Sbjct: 65  SGVGHARYFSADVVSMPAIQDPKLNIVFKDLMAASWDKLPEPVIYEAKTALSGSTDDKAG 124

Query: 122 KEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYTAY 181
           KEIVENVFRAA A EEFGDILI++KMEIDDSIGLSGE+VKPLSDELK AL TVHDRY AY
Sbjct: 125 KEIVENVFRAAVAAEEFGDILINLKMEIDDSIGLSGENVKPLSDELKKALHTVHDRYIAY 184

Query: 182 LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]
BLAST of Lsi08G014510 vs. NCBI nr
Match: XP_038884886.1 (succinate dehydrogenase subunit 5, mitochondrial [Benincasa hispida])

HSP 1 Score: 429.9 bits (1104), Expect = 1.5e-116
Identity = 221/238 (92.86%), Postives = 228/238 (95.80%), Query Frame = 0 

Query: 1   MVILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSSDCSY 60
           MVILRSLLRSVRARSYAIAGV +RNLLQSNHQAARSFFYLSSHRSSFSDSPQ+VSSDC Y
Sbjct: 4   MVILRSLLRSVRARSYAIAGVTYRNLLQSNHQAARSFFYLSSHRSSFSDSPQKVSSDCGY 63

Query: 61  ISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDKA 120
           +SGV HARFFS DVVSMPTIGDS L+NAFKDLMA SWDKLPES+VYDVKAAL+GSTDDKA
Sbjct: 64  LSGVGHARFFSVDVVSMPTIGDSNLRNAFKDLMAASWDKLPESLVYDVKAALTGSTDDKA 123

Query: 121 GKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYTA 180
           GKEIVENVFRAAEA EEFG ILISMKMEIDDSIGLSGEDVKP+SDELKNALRTVHDRY  
Sbjct: 124 GKEIVENVFRAAEAAEEFGGILISMKMEIDDSIGLSGEDVKPVSDELKNALRTVHDRYVT 183

Query: 181 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 184 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]
BLAST of Lsi08G014510 vs. NCBI nr
Match: KAG6598386.1 (Succinate dehydrogenase subunit 5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 417.2 bits (1071), Expect = 9.8e-113
Identity = 213/238 (89.50%), Postives = 227/238 (95.38%), Query Frame = 0 

Query: 1   MVILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSSDCSY 60
           MVILRSLLRSVRARSY IAGV HRNLLQS+HQAARSFF LSSHRSSFSD P RVSSDC Y
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFPPRVSSDCGY 60

Query: 61  ISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDKA 120
           +SGV+HARFFS DVV+MPTIGD+KLQNAFKDLMA SWD LPESVVYDVKAALSGST+DKA
Sbjct: 61  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 120

Query: 121 GKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYTA 180
           GKEIVENVFRAAEA E+FGDIL+++KMEIDDSIG+SGEDVKPLSDELK AL+TV+DRYTA
Sbjct: 121 GKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 180

Query: 181 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           YLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 238

[Close]
BLAST of Lsi08G014510 vs. NCBI nr
Match: XP_004152731.1 (succinate dehydrogenase subunit 5, mitochondrial [Cucumis sativus] >KGN62537.1 hypothetical protein Csa_021793 [Cucumis sativus])

HSP 1 Score: 416.8 bits (1070), Expect = 1.3e-112
Identity = 214/237 (90.30%), Postives = 222/237 (93.67%), Query Frame = 0 

Query: 2   VILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSSDCSYI 61
           VILRSLLRSVRARSY IAGV HRNLLQSNHQ ARSFFYLSSHR SFSDSPQRVSSDCSY 
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSSDCSYP 64

Query: 62  SGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDKAG 121
           SGV HAR+FSADVVSMPTI D KLQN FKDLMA SWDKLPE+V+YDVK ALSGSTDDKAG
Sbjct: 65  SGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTDDKAG 124

Query: 122 KEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYTAY 181
           KEIVENVFRAAEA EEFGD+LI++KMEIDDSIGLSGE+VKPLSDELK AL TVH+RY AY
Sbjct: 125 KEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHERYIAY 184

Query: 182 LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]
BLAST of Lsi08G014510 vs. NCBI nr
Match: XP_023546793.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 414.1 bits (1063), Expect = 8.3e-112
Identity = 213/238 (89.50%), Postives = 226/238 (94.96%), Query Frame = 0 

Query: 1   MVILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSSDCSY 60
           MVILRSLLRSVRARSY IAGV HRNLLQS+ QAARSFF LSSHRSSFSD P RVSSDC Y
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCGY 60

Query: 61  ISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDKA 120
           +SGV+HARFFS DVV+MPTIGD+KLQNAFKDLMA SWD LPESVVYDVKAALSGST+DKA
Sbjct: 61  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 120

Query: 121 GKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYTA 180
           GKEIVENVFRAAEA E+FGDILI++KMEIDDSIG+SGEDVKPLSDELK AL+TV+DRYTA
Sbjct: 121 GKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 180

Query: 181 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           YLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 238

[Close]
BLAST of Lsi08G014510 vs. NCBI nr
Match: XP_022962336.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 412.5 bits (1059), Expect = 2.4e-111
Identity = 213/239 (89.12%), Postives = 227/239 (94.98%), Query Frame = 0 

Query: 1   MVILRSLLRSVRARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQRVSS-DCS 60
           MVILRSLLRSVRARSY IAGV HRNLLQS+HQAARSFF LSSHRSSFSD P RVSS DC 
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFPPRVSSADCG 60

Query: 61  YISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAALSGSTDDK 120
           Y+SGV+HARFFS DVV+MPTIGD+KLQNAFKDLMA SWD LPESVVYDVKAALSGST+DK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNALRTVHDRYT 180
           AGKEIVENVFRAAEA E+FGDIL+++KMEIDDSIG+SGEDVKPLSDELK AL+TV+DRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           AYLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Lsi08G014510 vs. TAIR 10
Match: AT1G47420.1 (succinate dehydrogenase 5 )

HSP 1 Score: 245.7 bits (626), Expect = 3.6e-65
Identity = 141/247 (57.09%), Postives = 168/247 (68.02%), Query Frame = 0 

Query: 12  RARSYAIAGVAHRNLLQSNHQAARSFFYLSSHRSSFSDSPQ------------------R 71
           R R  A A     +LLQ +H   +   +LS HR+  + +P                    
Sbjct: 14  RIRGTAQAQARVGSLLQGSHHIEK---HLSRHRTLITVAPNASVIGDVQINKGSFISYAS 73

Query: 72  VSSDCSY--ISGVSHARFFSADVVSMPTIGDSKLQNAFKDLMAESWDKLPESVVYDVKAA 131
           VS D  Y    G+   R FS DV  MP + DS + NAFKDLMA  W +LP +VV D K A
Sbjct: 74  VSRDLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTA 133

Query: 132 LSGSTDDKAGKEIVENVFRAAEAVEEFGDILISMKMEIDDSIGLSGEDVKPLSDELKNAL 191
           +S +TDDKAG+E ++NVFRAAEAVEEFG IL S+KMEIDDSIG+SGE VKPL +++ +AL
Sbjct: 134 ISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDAL 193

Query: 192 RTVHDRYTAYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSG 239
           RT + RY  YLDSF PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSG
Sbjct: 194 RTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSG 253

The following BLAST results are available for this feature:
BLAST of Lsi08G014510 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SX775.1e-6457.09Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
Q0JDA27.4e-5550.67Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of Lsi08G014510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP606.2e-11390.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360050 PE=4 SV=1[more]
A0A6J1HCU31.2e-11189.12succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita moschata OX=3... [more]
A0A6J1KAU41.4e-10987.87succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=366... [more]
A0A6J1C2829.3e-10987.39succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica ch... [more]
A0A1S3BAR61.2e-10888.19succinate dehydrogenase subunit 5, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1... [more]
BLAST of Lsi08G014510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884886.11.5e-11692.86succinate dehydrogenase subunit 5, mitochondrial [Benincasa hispida][more]
KAG6598386.19.8e-11389.50Succinate dehydrogenase subunit 5, mitochondrial, partial [Cucurbita argyrosperm... [more]
XP_004152731.11.3e-11290.30succinate dehydrogenase subunit 5, mitochondrial [Cucumis sativus] >KGN62537.1 h... [more]
XP_023546793.18.3e-11289.50succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Cucurbita pepo... [more]
XP_022962336.12.4e-11189.12succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata][more]
BLAST of Lsi08G014510 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G47420.13.6e-6557.09succinate dehydrogenase 5 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025397Succinate dehydrogenase subunit 5, mitochondrialPFAMPF14290DUF4370coord: 1..238
e-value: 1.7E-104
score: 348.8
IPR025397Succinate dehydrogenase subunit 5, mitochondrialPANTHERPTHR36139SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 1..238
NoneNo IPR availablePANTHERPTHR36139:SF1SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 1..238

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G014510.1Lsi08G014510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006099 tricarboxylic acid cycle
cellular_component GO:0045273 respiratory chain complex II