Lsi08G014310 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G014310
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr08: 22544414 .. 22548750 (-)
RNA-Seq ExpressionLsi08G014310
SyntenyLsi08G014310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGTAATATTCAAACCAATTGAAAGTGAGTTTGTGGTGAACTATAGAAAGAGGAGGAAAAAGAGGGGGGAAGATGTGCATTCGATTATTTTTTTCATGTTGCATAGATAACTGATAAAAAAATGTGTCTAATGGTATAATTATTATTATACAGCAACATATAATTTGTAATAGATAATATTTACATATTTTAATTTAACAAAAATAAAATGAGTTTATAATCTAAAATTATTTATCAAGCATCTATTATTTTTTTAAAAATGTAATTCTTTCTTTTAAATTTTTAAATTAAAAATTCAGATACAATGAAAACATAAATTTTTTTTTTTTTTTTTTAAAAAAAAAAACTTTCACTAATTAGATAACAAAATCCAAAAAGAGTTTTAAAAACAAATCTTTCAAACGGTATTCATGGATTCGATGAATTTAAAGAACATAAAACAACATCAATGTTGTATTTCAAACAAATTACCATTAGAAACAAAGAGAGAAAAGAAAGAGCGTTTAGTGGGGAATGAATAAGGGAAGAAGAGAAATGGTAGAATAAACAAGGTAGGATCAAGATCAAAGTTTTAAAGGAACAAAAAAGCTAACTTTATTTAAACATAAGGAAGAACATTGCAAGTATCATAAAAATTAATTAAATTGTGACTTCAATAAAATATAGGGTGCCGATCCAAAATTTTGATCACTCGAGTAAAGGTATATATTGTTTGATTCGTTTGAGCTATATATGTTACGAAATCGACAATTAAGGAATACAAAAAACATAAAAAATTAGAGAACCAACGCGGTTCACTAACAATGTGTTAGCTACGTCTAATGATACCTCCGTACTAGGTCGTTGATGAGGAGAATTAAAAGATAAATAGTATATTTAGGTTTAATATTTGTTTAGTTGTTAATTTAGATTAATTAGTGTTTAATTAGATTTGATTGGTTAATTATGTTATTTCTTTATAAAGCTATAAATAGCATCTTTAGGGTTGTAATAGAGAGTTTTTGGATATTCATTTTGAAATAGAACATTGTTCTTGGAGAGTTTCTCCCATCTTCAGGGATGGATTTTCCTTGTTTGGCCATGGACTTGGCCTAATATCTTTAACCCGCTGCATCAATTGGTATCAGAGCTTCGGATGACGTTCCCGAAGAGATGCGAAACTATAGATGGCGATTGGAGCCACGCTATCAACGGTGGACTGCCGGATTTGCTTCTCCAAGGAATGTTTCAACCCAAAACACCCCACCCTCACCTCCGTTACTACCACCATATTCTTCACCTCATTACCATGCTCATCAATACTATACATCATTTAGACGTTCTAGCCCATCCAACCAAAAAACACATAAACTCAAGTACCCTAAATACTACCTCTGTCCATCTGATTTTGAACTCAAAGATACTCCACAACTTCATCGATCAAGAAATATATTATGTAAATCACCCCAAAAAGACTATGAAGCTGATGACGAGGCAAATGAGATTTATGAAGAAGATGAAGATACTGATATTGAAGAAATTGGTGAAAAAAAGAGACGAAATCAGATTCTTCCATACCACTGGCAACTCTGGATGATTGAAGAAGAAACAAAAAAAGAAAAAGAGTCAGAAAAAGAAGAAATCGGAGAAAATGAAGAACGAGAGGATCAGAGTGAAGAAGAAAATGCTTTGTCTTTGGAGGTAGATAAGGTGGAGGGTACAATTGCCAGACAGACCGACAAGATTCATAATGTCGTTGGAGGAAGTCAGAATCCTATGTCGTCGGAGGAAATCGATTTTTCGGCTTCAGATGTCGTTGGCATTGCCGATAAGCACGCAGTTGGAGCATCGTCGAAGAGTGTCAAAGGAGGAAAAGACGTAGCCGGAGGAACTATCAATGCCTATGTTCGGAAGGAAAATGTAGATGTCGGAGAAGAAGGAGAAGAAGACGACCTGCCAGAAAAGGTCCTTTTGCTTGCCTCGCGGGAAAGTGGCGTACACGCCGTCGCCATCACCTTAGTCGAGTGGAAGGATCCGCCACCGTTACTGATGAACGTTGAAGGAGGAAACATTTCATGGTTGGCGGCTGCACAGGTTTATGGTGAAGAAGAAACCAAAGTAAACATAAGGGCATTTTTGGTAATTCACACAAAAACCCTAAAAGACACTTTGACAATTTTGGATATGGGCATCTCTTCAACGGTGGGCTTAATGGGCTCAAATATGAATTTACACTTCAATTGCAACTCAAAGGTGACTTTGCATTTCAATGAAAAGAAATTCATATGGAGCATTATTTTAATCCTAATTTGGATTTTAATTCCAATTTGGATTTGGAAAATTTTGCGCCGAGATTTCTCAGTTGGAGTCTACCACACTCAAAGAGCCGAGAGACGAAAGCTTCAATTTATCACCTTGAACTCGAGGACGAGTTCCTTTTTTTAAATCGGGGTGAATGATGAGGAGAATTATAAGATAAATAGTATATTTAGGTTTAATATTTGTTTAGTTGTTAATTTAGATTAATTAGTGTTTAATTAGATTTGATTGGTTTATTATGTTATTTCTTTATAAAGCTATAAATAGCATCTTTAGGGTTGTAATAGCGAGCTTTTGGATATTCATTTTGAAATAGAACAGTGTTCTTAGAGAGTTTCTCTCATCTTTAGGGATGGATTTCCCTTGTTTGGCCATGGACTTGGCCTAATACTTTTAACCCGCTGCATCAGTCGTTCAAAGCACCAGATAACAGATTCAAGGTATTCCAACAATATGTTTAGGTTAGAACATCCTTCTTTCATTGGATGGATTAGTTGTATATTAGTGAAATATATGATAGTTCGAGTTACTTACGACGATAGTACTCGAGTCAAGGCCAAGAATGATATAATTGATCTTTGGATGTTCATATCATATATGTTCACGCCTGAGAAGATAGTGTTACCGATTTTAAAATTTTAAGAATGAGAAGTTGTATATACACAAACAAGAATTAAAATTGCATGAGGAAATTTAAAATGTTATAAATATCAGATTCTTGTTAAGTGAATGATAGTGAAAGAGCATTTAAAGAAGTTAGATATATTTCCTAAGTTGAAGAATAATTTTTATACTTTCAGGACATTGAATATTTGCTACTTTATTTATATGATTGTGAATAGAACCTAAATGAATTAATGGTGATCCTAAAAGGAAATGAACAAAAATGACTTCTTGAATCAAACTTCATATTCGAAAACCCTAGCCCATAAGGAAGTCCATCAAATATTGATATCTAGATCTAAAGAAATAAATTATTATAGTGATGTATAGACTCTAAATATATTCCTTAATAATCGTGATTTCTCTTTAAAAGGAAAATAAATGTGTATTTTAGAAGTTGAATAAAGCGGGTGTGGTGAATCTAATTTTTTTTTAGTAGAGCTAAAATTAGATATTTAAAAGTATATAAAAATTAAAATTGAATAAATTCCAAAGTACATAGACCAAAAATAACATTTTAACCTGACAATGTATTAGTAAAAGAAGAGAGAGAACATATATGGTGAATGTACAGTTTTTAAGAGTTGGATTTGAGAATAAAATGTTCTTTTTATTTACAAAACAACTCATTAGAAGACAGGGTGAGAAAAATGGGAAAATTATTCCTAATCTTATGGTAGTATAATAAGCTCATAGCTCTCCCAACTAGTCATGGAAGTACACAAGCAAACATGATAATCCTCGTGATGCTTAAGCCTTTAATGAGAGAACAAAGATCGTCCTTAATAGCAGGAAGACCGCACGATAATTTTTCTAGAACAACAAACTTGGAGTCAAAGCATTTTGTTATTCTACATGGCGTGTCTATATGTCACACAAAGCATTTTGCTATCAAATTTTGTATAGTATAGAACTAATTAAATATTTGATTAAAATATTATTTTAGTCATGTATTTCTAAAAATCCAAAATTAAATCATGAATTAGGTTTTGTATACTTAGCCCAAAATTCGGCTTATATTAAGTGTAATTTTGGGTTAGATAAAGGTGAAGCTTCGAATAAATAAAGTAATGACTAATGACACGTTGGAGTGAAGATTCAGCGGCAGTGTGCTTAGAGGAAGAAAAAGCTCATTCAGCTTCAACAATGGCCTCGGAACGGGCATCTCCATTAACTTTTTCTCTGCGTCACTGACTTGTCGTATCGTCGCCACAACAACTGGGTCTCTTCAATTCCTCCGCTCCGTTGCTTCAGCTTCGGCTTTGGCTTCACTCCTCTGTTTGTTCTCCAAGTTTCCAACTGGGGCACCCTCTTTCTTCATATCCGCAACTTACAACTGTGGCTTCCATCCTTGGGCAATCGGCAGCTGA

mRNA sequence

ATGATCAAACGTTCTAGCCCATCCAACCAAAAAACACATAAACTCAAGTACCCTAAATACTACCTCTGTCCATCTGATTTTGAACTCAAAGATACTCCACAACTTCATCGATCAAGAAATATATTATGTAAATCACCCCAAAAAGACTATGAAGCTGATGACGAGGCAAATGAGATTTATGAAGAAGATGAAGATACTGATATTGAAGAAATTGGTGAAAAAAAGAGACGAAATCAGATTCTTCCATACCACTGGCAACTCTGGATGATTGAAGAAGAAACAAAAAAAGAAAAAGAGTCAGAAAAAGAAGAAATCGGAGAAAATGAAGAACGAGAGGATCAGAGTGAAGAAGAAAATGCTTTGTCTTTGGAGGTAGATAAGGTGGAGGGTACAATTGCCAGACAGACCGACAAGATTCATAATGTCGTTGGAGGAAGTCAGAATCCTATGTCGTCGGAGGAAATCGATTTTTCGGCTTCAGATGTCGTTGGCATTGCCGATAAGCACGCAGTTGGAGCATCGTCGAAGAGTGTCAAAGGAGGAAAAGACGTAGCCGGAGGAACTATCAATGCCTATGTTCGGAAGGAAAATGTAGATGTCGGAGAAGAAGGAGAAGAAGACGACCTGCCAGAAAAGGTCCTTTTGCTTGCCTCGCGGGAAAGTGGCGTACACGCCGTCGCCATCACCTTAGTCGAGTGGAAGGATCCGCCACCGTTACTGATGAACGTTGAAGGAGGAAACATTTCATGGTTGGCGGCTGCACAGGTTTATGGTGAAGAAGAAACCAAAGTAAACATAAGGGCATTTTTGATAAAGGTGAAGCTTCGAATAAATAAAGTAATGACTAATGACACCGGCAGTGTGCTTAGAGGAAGAAAAAGCTCATTCAGCTTCAACAATGGCCTCGGAACGGGCATCTCCATTAACTTTTTCTCTGCGTCACTGACTTGTCGTATCGTCGCCACAACAACTGGGTCTCTTCAATTCCTCCGCTCCGTTGCTTCAGCTTCGGCTTTGGCTTCACTCCTCTGTTTGTTCTCCAAGTTTCCAACTGGGGCACCCTCTTTCTTCATATCCGCAACTTACAACTGTGGCTTCCATCCTTGGGCAATCGGCAGCTGA

Coding sequence (CDS)

ATGATCAAACGTTCTAGCCCATCCAACCAAAAAACACATAAACTCAAGTACCCTAAATACTACCTCTGTCCATCTGATTTTGAACTCAAAGATACTCCACAACTTCATCGATCAAGAAATATATTATGTAAATCACCCCAAAAAGACTATGAAGCTGATGACGAGGCAAATGAGATTTATGAAGAAGATGAAGATACTGATATTGAAGAAATTGGTGAAAAAAAGAGACGAAATCAGATTCTTCCATACCACTGGCAACTCTGGATGATTGAAGAAGAAACAAAAAAAGAAAAAGAGTCAGAAAAAGAAGAAATCGGAGAAAATGAAGAACGAGAGGATCAGAGTGAAGAAGAAAATGCTTTGTCTTTGGAGGTAGATAAGGTGGAGGGTACAATTGCCAGACAGACCGACAAGATTCATAATGTCGTTGGAGGAAGTCAGAATCCTATGTCGTCGGAGGAAATCGATTTTTCGGCTTCAGATGTCGTTGGCATTGCCGATAAGCACGCAGTTGGAGCATCGTCGAAGAGTGTCAAAGGAGGAAAAGACGTAGCCGGAGGAACTATCAATGCCTATGTTCGGAAGGAAAATGTAGATGTCGGAGAAGAAGGAGAAGAAGACGACCTGCCAGAAAAGGTCCTTTTGCTTGCCTCGCGGGAAAGTGGCGTACACGCCGTCGCCATCACCTTAGTCGAGTGGAAGGATCCGCCACCGTTACTGATGAACGTTGAAGGAGGAAACATTTCATGGTTGGCGGCTGCACAGGTTTATGGTGAAGAAGAAACCAAAGTAAACATAAGGGCATTTTTGATAAAGGTGAAGCTTCGAATAAATAAAGTAATGACTAATGACACCGGCAGTGTGCTTAGAGGAAGAAAAAGCTCATTCAGCTTCAACAATGGCCTCGGAACGGGCATCTCCATTAACTTTTTCTCTGCGTCACTGACTTGTCGTATCGTCGCCACAACAACTGGGTCTCTTCAATTCCTCCGCTCCGTTGCTTCAGCTTCGGCTTTGGCTTCACTCCTCTGTTTGTTCTCCAAGTTTCCAACTGGGGCACCCTCTTTCTTCATATCCGCAACTTACAACTGTGGCTTCCATCCTTGGGCAATCGGCAGCTGA

Protein sequence

MIKRSSPSNQKTHKLKYPKYYLCPSDFELKDTPQLHRSRNILCKSPQKDYEADDEANEIYEEDEDTDIEEIGEKKRRNQILPYHWQLWMIEEETKKEKESEKEEIGENEEREDQSEEENALSLEVDKVEGTIARQTDKIHNVVGGSQNPMSSEEIDFSASDVVGIADKHAVGASSKSVKGGKDVAGGTINAYVRKENVDVGEEGEEDDLPEKVLLLASRESGVHAVAITLVEWKDPPPLLMNVEGGNISWLAAAQVYGEEETKVNIRAFLIKVKLRINKVMTNDTGSVLRGRKSSFSFNNGLGTGISINFFSASLTCRIVATTTGSLQFLRSVASASALASLLCLFSKFPTGAPSFFISATYNCGFHPWAIGS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G014310.1Lsi08G014310.1mRNA