Lsi08G014080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G014080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr08: 22336864 .. 22337199 (+)
RNA-Seq ExpressionLsi08G014080
SyntenyLsi08G014080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGAGGTGTTTAGTTTGGGCGGGGGGAAAGGGAAAGGGAAAGAAGATGGTATGAAACTGAATGATGGTGGAGATGGCGGCTTGGACAATAAAATTCAAGATGGGGATAGAACGAGAGCTGTTTCAGTGACCAAATACAGTCCATTTTGGTCTGAGAGGTTCCACTTTTTGTCTGCTGTGAAACTGGAGGCTGATGCTACTTGTATCGATGTCTTGCCTCTTAGGGATTCTGAGGGTCATAGCAAGTATGTTGCAGTTGGAGATGAGAGAGGGAGAATTTGTGTGTTTGTGAGAAATGGAGATGTTGTGGTTGAGCTTAGTACGATGTCTTAA

mRNA sequence

ATGCCTGAGGTGTTTAGTTTGGGCGGGGGGAAAGGGAAAGGGAAAGAAGATGGTATGAAACTGAATGATGGTGGAGATGGCGGCTTGGACAATAAAATTCAAGATGGGGATAGAACGAGAGCTGTTTCAGTGACCAAATACAGTCCATTTTGGTCTGAGAGGTTCCACTTTTTGTCTGCTGTGAAACTGGAGGCTGATGCTACTTGTATCGATGTCTTGCCTCTTAGGGATTCTGAGGGTCATAGCAAGTATGTTGCAGTTGGAGATGAGAGAGGGAGAATTTGTGTGTTTGTGAGAAATGGAGATGTTGTGGTTGAGCTTAGTACGATGTCTTAA

Coding sequence (CDS)

ATGCCTGAGGTGTTTAGTTTGGGCGGGGGGAAAGGGAAAGGGAAAGAAGATGGTATGAAACTGAATGATGGTGGAGATGGCGGCTTGGACAATAAAATTCAAGATGGGGATAGAACGAGAGCTGTTTCAGTGACCAAATACAGTCCATTTTGGTCTGAGAGGTTCCACTTTTTGTCTGCTGTGAAACTGGAGGCTGATGCTACTTGTATCGATGTCTTGCCTCTTAGGGATTCTGAGGGTCATAGCAAGTATGTTGCAGTTGGAGATGAGAGAGGGAGAATTTGTGTGTTTGTGAGAAATGGAGATGTTGTGGTTGAGCTTAGTACGATGTCTTAA

Protein sequence

MPEVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSAVKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTMS
Homology
BLAST of Lsi08G014080 vs. ExPASy Swiss-Prot
Match: Q9FRK5 (Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana OX=3702 GN=At1g75140 PE=1 SV=3)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-23
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 0

Query: 37  DRTRAVSVTKYSPFWSERFHFLSAVKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICV 96
           ++ +A SVTKYSPFWSERF F SAVKL+++ATCI+VLP RD EG SKY AVGD  GR+ V
Sbjct: 101 EKAKAFSVTKYSPFWSERFEFTSAVKLDSEATCINVLPFRDHEGLSKYFAVGDSSGRVFV 160

Query: 97  FVRNGDVVVELST 110
           F+RNGDV+VE  T
Sbjct: 161 FLRNGDVLVEFFT 173

BLAST of Lsi08G014080 vs. ExPASy TrEMBL
Match: A0A6J1KBU3 (uncharacterized membrane protein At1g75140-like OS=Cucurbita maxima OX=3661 GN=LOC111491879 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 91/111 (81.98%), Postives = 94/111 (84.68%), Query Frame = 0

Query: 1   MPEVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSA 60
           +PEV SLGG    GKEDG  LNDGGDG LD KIQDG R RAVSVTKYSPFWSERFHFLSA
Sbjct: 96  VPEVVSLGG----GKEDG--LNDGGDGALDTKIQDGGRGRAVSVTKYSPFWSERFHFLSA 155

Query: 61  VKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTMS 112
           VKLE+DAT I+VLPLRD EGHSKYVAVGDE GRI VFVRNGDV VEL TMS
Sbjct: 156 VKLESDATSINVLPLRDFEGHSKYVAVGDETGRIYVFVRNGDVAVELRTMS 200

BLAST of Lsi08G014080 vs. ExPASy TrEMBL
Match: A0A6J1CSU7 (uncharacterized membrane protein At1g75140-like OS=Momordica charantia OX=3673 GN=LOC111013986 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.2e-39
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 0

Query: 1   MPEVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSA 60
           +PEV SLGG     KEDG  LNDGGDGGL++KI+DGDRTRAVSVTKYSPFWSERFHFLSA
Sbjct: 100 VPEVVSLGG----RKEDG--LNDGGDGGLESKIRDGDRTRAVSVTKYSPFWSERFHFLSA 159

Query: 61  VKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTMS 112
           VKL++DATCI+VLP RD EGHSKYV VGDE+GR+ VF RNGDV VEL T S
Sbjct: 160 VKLDSDATCINVLPFRDFEGHSKYVVVGDEKGRVYVFTRNGDVAVELRTKS 204

BLAST of Lsi08G014080 vs. ExPASy TrEMBL
Match: A0A0A0LNK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361500 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.1e-38
Identity = 89/110 (80.91%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 1   MPEVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSA 60
           +PEV   G  K KGKE+G  LNDGGDGGLD+KIQDG RTRAVSVTKYS FWSERFHFLSA
Sbjct: 95  VPEV---GKEKRKGKEEG--LNDGGDGGLDHKIQDGGRTRAVSVTKYSSFWSERFHFLSA 154

Query: 61  VKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTM 111
           VKLEADATCI+VLPLRD EGHSKYVAVGDERGRI VFV NGDV +EL T+
Sbjct: 155 VKLEADATCINVLPLRDFEGHSKYVAVGDERGRIYVFVINGDVAIELPTV 199

BLAST of Lsi08G014080 vs. ExPASy TrEMBL
Match: A0A6J1HC37 (uncharacterized membrane protein At1g75140-like OS=Cucurbita moschata OX=3662 GN=LOC111462650 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37
Identity = 87/111 (78.38%), Postives = 93/111 (83.78%), Query Frame = 0

Query: 1   MPEVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSA 60
           +PEV SLGG    GKEDG  LNDGG G LD ++QDG R RAVSVTKYSPFWSERFHFLSA
Sbjct: 96  VPEVVSLGG----GKEDG--LNDGGHGALDTRVQDGGRGRAVSVTKYSPFWSERFHFLSA 155

Query: 61  VKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTMS 112
           VKLE+DAT I+VLPLRD EGHSKYVAVGDE GRI VFVRNGDV VEL T+S
Sbjct: 156 VKLESDATSINVLPLRDFEGHSKYVAVGDETGRIYVFVRNGDVAVELRTVS 200

BLAST of Lsi08G014080 vs. ExPASy TrEMBL
Match: A0A6J1KPQ0 (uncharacterized membrane protein At1g75140-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496113 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.4e-37
Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 0

Query: 3   EVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSAVK 62
           EV SLGGGKG        L+DGGDGGLDN IQDG   RAV+VTKYSPFWSERFHFLSAVK
Sbjct: 84  EVGSLGGGKG--------LSDGGDGGLDNGIQDGGGGRAVTVTKYSPFWSERFHFLSAVK 143

Query: 63  LEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTMS 112
           L+ DATCI+VLPLRD EGHSKYVAVGDERGR+ VF+RNGDV VEL T+S
Sbjct: 144 LDFDATCINVLPLRDFEGHSKYVAVGDERGRVYVFMRNGDVAVELCTVS 184

BLAST of Lsi08G014080 vs. NCBI nr
Match: XP_038885478.1 (uncharacterized membrane protein At1g75140-like [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 9.4e-42
Identity = 91/109 (83.49%), Postives = 97/109 (88.99%), Query Frame = 0

Query: 3   EVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSAVK 62
           EV  LGG K KGKEDG  LNDGGDGGLDNKIQDG R RAVSVTKYSPFWSERFHFLSAVK
Sbjct: 97  EVVGLGGVKRKGKEDG--LNDGGDGGLDNKIQDGGRMRAVSVTKYSPFWSERFHFLSAVK 156

Query: 63  LEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTMS 112
           LE+DATCI+VLP+RD EGHSKYVAVGDE+GRI VFVRNGDV +EL T+S
Sbjct: 157 LESDATCINVLPIRDFEGHSKYVAVGDEKGRIYVFVRNGDVAIELPTVS 203

BLAST of Lsi08G014080 vs. NCBI nr
Match: XP_022996718.1 (uncharacterized membrane protein At1g75140-like [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 4.4e-39
Identity = 91/111 (81.98%), Postives = 94/111 (84.68%), Query Frame = 0

Query: 1   MPEVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSA 60
           +PEV SLGG    GKEDG  LNDGGDG LD KIQDG R RAVSVTKYSPFWSERFHFLSA
Sbjct: 96  VPEVVSLGG----GKEDG--LNDGGDGALDTKIQDGGRGRAVSVTKYSPFWSERFHFLSA 155

Query: 61  VKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTMS 112
           VKLE+DAT I+VLPLRD EGHSKYVAVGDE GRI VFVRNGDV VEL TMS
Sbjct: 156 VKLESDATSINVLPLRDFEGHSKYVAVGDETGRIYVFVRNGDVAVELRTMS 200

BLAST of Lsi08G014080 vs. NCBI nr
Match: XP_011649613.2 (uncharacterized membrane protein At1g75140 [Cucumis sativus] >KAE8652103.1 hypothetical protein Csa_022548 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 7.5e-39
Identity = 90/110 (81.82%), Postives = 96/110 (87.27%), Query Frame = 0

Query: 1   MPEVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSA 60
           +PEV   G  K KGKE+G  LNDGGDGGLD+KIQDG RTRAVSVTKYS FWSERFHFLSA
Sbjct: 95  VPEV---GKEKRKGKEEG--LNDGGDGGLDHKIQDGGRTRAVSVTKYSSFWSERFHFLSA 154

Query: 61  VKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTM 111
           VKLEADATCI+VLPLRD EGHSKYVAVGDERGRI VFVRNGDV +EL T+
Sbjct: 155 VKLEADATCINVLPLRDFEGHSKYVAVGDERGRIYVFVRNGDVAIELPTV 199

BLAST of Lsi08G014080 vs. NCBI nr
Match: XP_022144258.1 (uncharacterized membrane protein At1g75140-like [Momordica charantia])

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-38
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 0

Query: 1   MPEVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSA 60
           +PEV SLGG     KEDG  LNDGGDGGL++KI+DGDRTRAVSVTKYSPFWSERFHFLSA
Sbjct: 100 VPEVVSLGG----RKEDG--LNDGGDGGLESKIRDGDRTRAVSVTKYSPFWSERFHFLSA 159

Query: 61  VKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTMS 112
           VKL++DATCI+VLP RD EGHSKYV VGDE+GR+ VF RNGDV VEL T S
Sbjct: 160 VKLDSDATCINVLPFRDFEGHSKYVVVGDEKGRVYVFTRNGDVAVELRTKS 204

BLAST of Lsi08G014080 vs. NCBI nr
Match: XP_023546241.1 (uncharacterized membrane protein At1g75140-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 88/111 (79.28%), Postives = 94/111 (84.68%), Query Frame = 0

Query: 1   MPEVFSLGGGKGKGKEDGMKLNDGGDGGLDNKIQDGDRTRAVSVTKYSPFWSERFHFLSA 60
           +PEV SLGG    GK+DG  LNDGGDG LD +IQDG R RAVSVTKYSPFWSERFHF+SA
Sbjct: 96  VPEVVSLGG----GKQDG--LNDGGDGDLDTRIQDGGRGRAVSVTKYSPFWSERFHFMSA 155

Query: 61  VKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVFVRNGDVVVELSTMS 112
           VKLE+DAT I+VLPLRD EGHSKYVAVGDE GRI VFVRNGDV VEL TMS
Sbjct: 156 VKLESDATSINVLPLRDFEGHSKYVAVGDETGRIYVFVRNGDVAVELRTMS 200

BLAST of Lsi08G014080 vs. TAIR 10
Match: AT1G19370.1 (unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 38  RTRAVSVTKYSPFWSERFHFLSAVKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICVF 97
           R +A SVTKYSPFWSERF F SAVKL +DATCI+VLP RD EG SKY A+GD +GR+ VF
Sbjct: 103 RAKAFSVTKYSPFWSERFQFTSAVKLNSDATCINVLPFRDFEGSSKYFAIGDSKGRVYVF 162

Query: 98  VRNGDVVVELST 110
           +RNGDV++E  T
Sbjct: 163 LRNGDVLIEFFT 174

BLAST of Lsi08G014080 vs. TAIR 10
Match: AT1G75140.1 (unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19370.1); Has 51 Blast hits to 49 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 8.5e-25
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 0

Query: 37  DRTRAVSVTKYSPFWSERFHFLSAVKLEADATCIDVLPLRDSEGHSKYVAVGDERGRICV 96
           ++ +A SVTKYSPFWSERF F SAVKL+++ATCI+VLP RD EG SKY AVGD  GR+ V
Sbjct: 101 EKAKAFSVTKYSPFWSERFEFTSAVKLDSEATCINVLPFRDHEGLSKYFAVGDSSGRVFV 160

Query: 97  FVRNGDVVVELST 110
           F+RNGDV+VE  T
Sbjct: 161 FLRNGDVLVEFFT 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FRK51.2e-2368.49Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Match NameE-valueIdentityDescription
A0A6J1KBU32.1e-3981.98uncharacterized membrane protein At1g75140-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1CSU76.2e-3977.48uncharacterized membrane protein At1g75140-like OS=Momordica charantia OX=3673 G... [more]
A0A0A0LNK93.1e-3880.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361500 PE=4 SV=1[more]
A0A6J1HC371.2e-3778.38uncharacterized membrane protein At1g75140-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1KPQ04.4e-3777.06uncharacterized membrane protein At1g75140-like isoform X1 OS=Cucurbita maxima O... [more]
Match NameE-valueIdentityDescription
XP_038885478.19.4e-4283.49uncharacterized membrane protein At1g75140-like [Benincasa hispida][more]
XP_022996718.14.4e-3981.98uncharacterized membrane protein At1g75140-like [Cucurbita maxima][more]
XP_011649613.27.5e-3981.82uncharacterized membrane protein At1g75140 [Cucumis sativus] >KAE8652103.1 hypot... [more]
XP_022144258.11.3e-3877.48uncharacterized membrane protein At1g75140-like [Momordica charantia][more]
XP_023546241.14.8e-3879.28uncharacterized membrane protein At1g75140-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT1G19370.11.7e-2569.44unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant struc... [more]
AT1G75140.18.5e-2568.49unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant struc... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availablePANTHERPTHR35464OS06G0115200 PROTEINcoord: 27..110
NoneNo IPR availablePANTHERPTHR35464:SF1OS06G0115200 PROTEINcoord: 27..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G014080.1Lsi08G014080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane