Lsi08G013690 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G013690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	TLC domain-containing protein
Location	chr08: 21978120 .. 21980859 (-)
RNA-Seq Expression	Lsi08G013690
Synteny	Lsi08G013690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGTCCTAGTTGCACCAATGAAAAACCCAACCAACCTATTCTTTAGAGGAAAAAAAGAAAAGCTTCATTATACAAAGTAGTAGTTTTCTCTGATCTTTCCACAAGACTCGGCTTCTTCTTCTGCAAAAGGTGTGCTTTTGTTAGAGCTGCCATGGAAGTTTCAGACAGTCGAGATCGGGACGTAAAAAACATCGTCGTTTTGGGGGTAATATCATGGACATTGGGTTTCATTTGCTTAAGAAAACTCCTTCCAAATCGATCTTTTGAGTTTTGCAATCGACTCATTTCCACACTCCATGCTTGTTTGGCTGTTACATTGGCTTCCATCTCTGTTCAAAATTGGCGTTGTCCCATTTGTCCTCTTGCTTCGAAATCCTCACCCTTTCAGGTTCATATTTCTTCTTCCTCTTTATGATCTATAATTTTCAATCATCAAAATCCAAATCCAATTTTTTTTTTCTTTTTAGTTTGATAATTATAAGAGAAGGGGATCGAGATTTATGATTAAATGAAATTAGCTGATTTGTTAATTATTTGACATTAAGTAGTTGTTAATAAGATTATGTTTTTAAGCTATTAAATTTGGTGGGTTGGGATCATGTGTTAGCCAGATGCAAACATTGGCTGTGAGCTGTTCTTATTTGATATATGATTTGGTGTGTTGCCATTTTGACAAGAAAGTGAGTTTGGACAATACAATCCATCACTTGGTTAGCATTGTTGGAATTGCAGCAGGCTTTGCTTATCAAAAGGTAATCCCTATTTTTTTTTTCCTTTTTGGTTGAAGATTTATTCTCGACTTTATGTATATGTATTTTATCCACTAAACTATGTTCGAATTGTTCACTTCTGCCTTTCTTTAAATTTTTTAATTTTCAGACTTCATTTAATAACTATTTGATTTTATATTTTTGAAGAATTTTATCAATTTCTTTGTTTTTTTATCTATTTTTGAACAATGTTCTTAAAATTTATGTTAAGTTTTGAAATTTAACTACAAATTCAAATATCGTAAGAAAACAAACATAATTTTCGTAAAGTAAAAACAAAAAACAAAGATGATTATAAAAGACGAGGCTGAATTATCAAGTTTTAATTATTGAATGATGTGATTGTTACAGGAGAATAATTGTTATTTATTTTATATAACCACAGTTGATTTACATAATTGATGAATATAATGTGAATATTGAAATTATTTTGCCATTAATATTTTACCCAATTAATTAGCAATAATTTTGGGTAATACACATGTAGAGTGGGTCAGAGATGGTAGCAGCATTGTGGATAACGGAGATCTCAAGCCCCTTTCTCCATTTAAGGGAAATTCTTAAAGAAATTGGTTACAAAGGCACTGACCTTAATTTGGCTGCTGATGTAAGTCACTCTTTATATATACATATATATTTTGGCAGTCGACACATATTTTAACTAGTTGAGCTAAATTTAAATACTTAAACAAGACTATATTAATACAAATGATCAAAGTAAAGTTTTGTATACAATTCAAAGAAAAAATTAATGGAGAAACCAACCCTTTGAATATATTTGAAGGCAAAATTAAAGCATAGATGAGAATGTTATTATTTTAAATATTTGTCGAATACTTTTAAACTGTTTGATTAAACGTTGGAAGTTTTCGAAGCAATAATATTTTTAAAAACTTATTTTTTTTATTTTAGAATTTGGTTAAAAATTTAAATGGTTCTAAAATAGATTAAAATCATTGTTTATAAAGAGAGAAAACAAATAAAAAAAATTAAATGATTATTAAATCGAAACTAAGCTAAAGTGATATTGATGTGTTGACAGATTGGATTTGCAGTGATATTCTCATTTGCAAGAATGGTTGGAGGGCCTTATCTCACCTACATGACTCTATCTGCCACTGTCCCTTTTCTTATTAAGGTATTTTTTTTTTCAAACATCTAACTGCATATATTCGCAATAAAAGGCCGCTTCAATTAATAAAATGTTGATATCAATAGATATTATTAGGATAAAAAGTACAAAAACCTTTGAACGATGATTTTATGTAATACCTAGCATTAACTAAACGATAACCTAATAGACCCTGTTAAACAAAAATTAATTGGCCAATGACAAATCATGAAACAAGACGATTAGGTGAATAAAATAAATCTCATTTTATGAAAACAATGCAACTTTCACATTTACTCTAACTTATCCAACAATCTACTTTCTACGATTTATCTTTCTTGTCATGTCAAATCATACAGATATTTATCTTGTTGACATACTACATTATCGATATAACTGACAATGCTAAAGTAACCACAAATTTATGATTAAAAAAACACAACCATAAAAGTAATAAATCTATAATATTATTTGAAACATTAACACGTTTACTCCATTATCAATTACTTTATGCAACTTTCACTGACCAATTAGTTCCTATACTTCTTCAGGCCATGGCTCTGGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATTGAAGAACAATTAATCTTAGCCAAGGAATTGTCAAAAAGATAGAATTCTAGCAATTTTATGATTCTTCAAATCCCATTTGTATCTTGGGAGCAGTGACATTCCAAACAAAAACAGTGCATAAACTTTGCAATGAATTGTGTATTCTGTAAACTGAGTAGCAGATGATCATGTTTGAGTAAATGAAAATCAAAATGAACCATTTCATCTTCAGCTTTA

mRNA sequence

CGGTCCTAGTTGCACCAATGAAAAACCCAACCAACCTATTCTTTAGAGGAAAAAAAGAAAAGCTTCATTATACAAAGTAGTAGTTTTCTCTGATCTTTCCACAAGACTCGGCTTCTTCTTCTGCAAAAGGTGTGCTTTTGTTAGAGCTGCCATGGAAGTTTCAGACAGTCGAGATCGGGACGTAAAAAACATCGTCGTTTTGGGGGTAATATCATGGACATTGGGTTTCATTTGCTTAAGAAAACTCCTTCCAAATCGATCTTTTGAGTTTTGCAATCGACTCATTTCCACACTCCATGCTTGTTTGGCTGTTACATTGGCTTCCATCTCTGTTCAAAATTGGCGTTGTCCCATTTGTCCTCTTGCTTCGAAATCCTCACCCTTTCAGATGCAAACATTGGCTGTGAGCTGTTCTTATTTGATATATGATTTGGTGTGTTGCCATTTTGACAAGAAAGTGAGTTTGGACAATACAATCCATCACTTGGTTAGCATTGTTGGAATTGCAGCAGGCTTTGCTTATCAAAAGATATTTATCTTGTTGACATACTACATTATCGATATAACTGACAATGCTAAAGCCATGGCTCTGGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATTGAAGAACAATTAATCTTAGCCAAGGAATTGTCAAAAAGATAGAATTCTAGCAATTTTATGATTCTTCAAATCCCATTTGTATCTTGGGAGCAGTGACATTCCAAACAAAAACAGTGCATAAACTTTGCAATGAATTGTGTATTCTGTAAACTGAGTAGCAGATGATCATGTTTGAGTAAATGAAAATCAAAATGAACCATTTCATCTTCAGCTTTA

Coding sequence (CDS)

ATGGAAGTTTCAGACAGTCGAGATCGGGACGTAAAAAACATCGTCGTTTTGGGGGTAATATCATGGACATTGGGTTTCATTTGCTTAAGAAAACTCCTTCCAAATCGATCTTTTGAGTTTTGCAATCGACTCATTTCCACACTCCATGCTTGTTTGGCTGTTACATTGGCTTCCATCTCTGTTCAAAATTGGCGTTGTCCCATTTGTCCTCTTGCTTCGAAATCCTCACCCTTTCAGATGCAAACATTGGCTGTGAGCTGTTCTTATTTGATATATGATTTGGTGTGTTGCCATTTTGACAAGAAAGTGAGTTTGGACAATACAATCCATCACTTGGTTAGCATTGTTGGAATTGCAGCAGGCTTTGCTTATCAAAAGATATTTATCTTGTTGACATACTACATTATCGATATAACTGACAATGCTAAAGCCATGGCTCTGGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATTGAAGAACAATTAA

Protein sequence

MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAAGFAYQKIFILLTYYIIDITDNAKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

Homology

[Close]

BLAST of Lsi08G013690 vs. ExPASy TrEMBL
Match: A0A5A7VDR0 (Transmembrane protein 136 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005440 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.9e-66
Identity = 147/233 (63.09%), Postives = 161/233 (69.10%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASI 60
           MEVS++RD D+ N+VV GVISWTLGF+ LRK++ PNRSFEFCNRLIST+HA LAVTLASI
Sbjct: 1   MEVSETRDPDIINVVVYGVISWTLGFVLLRKVVFPNRSFEFCNRLISTIHAFLAVTLASI 60

Query: 61  SVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIA 120
           SVQNWRCPICPLASKSS FQMQTL VSCSYLIYD+VCCHFDKKVSLDNTIHHLVSIVGIA
Sbjct: 61  SVQNWRCPICPLASKSSSFQMQTLGVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSIVGIA 120

Query: 121 AGFAYQK---------------------------------------------IFIL---- 178
           AGFAYQK                                             IF      
Sbjct: 121 AGFAYQKCGSEMVAALWITEISSPFLHLREILKEFGYRGTDLNLAADIGFAVIFSFARMV 180

[Close]

BLAST of Lsi08G013690 vs. ExPASy TrEMBL
Match: A0A6J1HDN8 (transmembrane protein 56-B-like OS=Cucurbita moschata OX=3662 GN=LOC111462571 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.9e-66
Identity = 143/233 (61.37%), Postives = 157/233 (67.38%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASIS 60
           M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASIS
Sbjct: 1   MAVSTGRDPDVINVVVLGVIAWTLAFISFRKLLPNRSFEFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAA 120
           V+NWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFDKKV++DN IHHLV IVGIAA
Sbjct: 61  VKNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120

Query: 121 GFAYQKI----------------FILLTYYIIDITDNA---------------------- 178
           GFAYQK                 F+ L   + +I D                        
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGDRGTDLNLAADIGFAVIFSFGRMVG 180

[Close]

BLAST of Lsi08G013690 vs. ExPASy TrEMBL
Match: A0A1S3BB19 (transmembrane protein 136 OS=Cucumis melo OX=3656 GN=LOC103487998 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.9e-66
Identity = 147/233 (63.09%), Postives = 161/233 (69.10%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASI 60
           MEVS++RD D+ N+VV GVISWTLGF+ LRK++ PNRSFEFCNRLIST+HA LAVTLASI
Sbjct: 1   MEVSETRDPDIINVVVYGVISWTLGFVLLRKVVFPNRSFEFCNRLISTIHAFLAVTLASI 60

Query: 61  SVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIA 120
           SVQNWRCPICPLASKSS FQMQTL VSCSYLIYD+VCCHFDKKVSLDNTIHHLVSIVGIA
Sbjct: 61  SVQNWRCPICPLASKSSSFQMQTLGVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSIVGIA 120

Query: 121 AGFAYQK---------------------------------------------IFIL---- 178
           AGFAYQK                                             IF      
Sbjct: 121 AGFAYQKCGSEMVAALWITEISSPFLHLREILKEFGYRGTDLNLAADIGFAVIFSFARMV 180

[Close]

BLAST of Lsi08G013690 vs. ExPASy TrEMBL
Match: A0A0A0LLI2 (TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G362410 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.5e-66
Identity = 148/233 (63.52%), Postives = 160/233 (68.67%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRK-LLPNRSFEFCNRLISTLHACLAVTLASI 60
           MEVS+SRD DV N++V GVISWTLGFI LRK + PNRSFEFCNRLIST+HA LAVTLASI
Sbjct: 1   MEVSESRDPDVINVMVYGVISWTLGFILLRKAVFPNRSFEFCNRLISTIHAFLAVTLASI 60

Query: 61  SVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIA 120
           SVQNWRCPICPLASKSS FQMQTL+VSCSYLIYD+VCCHFDKKVSLDNTIHHLVSIVGIA
Sbjct: 61  SVQNWRCPICPLASKSSSFQMQTLSVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSIVGIA 120

Query: 121 AGFAYQK---------------------------------------------IFIL---- 178
           AG AYQK                                             IF      
Sbjct: 121 AGLAYQKCGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMV 180

[Close]

BLAST of Lsi08G013690 vs. ExPASy TrEMBL
Match: A0A6J1K2K3 (transmembrane protein 136-like OS=Cucurbita maxima OX=3661 GN=LOC111491828 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 9.4e-66
Identity = 145/233 (62.23%), Postives = 158/233 (67.81%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASIS 60
           M VS  RD DV N+VVLGVI+WTL FI LRKLLP RSF FCNRL+STLHACLAVTLASIS
Sbjct: 1   MVVSTGRDPDVINVVVLGVIAWTLAFISLRKLLPKRSFGFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAA 120
           VQNWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFDKKV++DN IHHLVSIVGIAA
Sbjct: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVSIVGIAA 120

Query: 121 GFAYQK---------------------------------------------IFIL----- 178
           GFAYQK                                             IF +     
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDFNLAADFGFAVIFSIGRMVG 180

[Close]

BLAST of Lsi08G013690 vs. NCBI nr
Match: XP_038886579.1 (TLC domain-containing protein 5-like [Benincasa hispida])

HSP 1 Score: 273.9 bits (699), Expect = 1.0e-69
Identity = 155/232 (66.81%), Postives = 161/232 (69.40%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASIS 60
           M VSDSRD  V NIVV GVISWTLGFI LRKLLPNRSFEFCNRLIST+HACLAVTLASIS
Sbjct: 1   MAVSDSRDPHVINIVVFGVISWTLGFIFLRKLLPNRSFEFCNRLISTIHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAA 120
           V+NWRCPICPLAS+SSPFQMQTLAVSCSYLIYD+VCCHFDKKVSLDNTIHHLVSIVGIAA
Sbjct: 61  VRNWRCPICPLASQSSPFQMQTLAVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSIVGIAA 120

Query: 121 GFAYQK---------------------------------------------IFI------ 178
           GFAYQK                                             IF       
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSSARMVG 180

[Close]

BLAST of Lsi08G013690 vs. NCBI nr
Match: KAG7029404.1 (Transmembrane protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.1 bits (671), Expect = 1.8e-66
Identity = 146/233 (62.66%), Postives = 157/233 (67.38%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASIS 60
           M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASIS
Sbjct: 1   MAVSTGRDPDVINVVVLGVIAWTLAFISFRKLLPNRSFEFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAA 120
           VQNWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFDKKV++DN IHHLV IVGIAA
Sbjct: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120

Query: 121 GFAYQK---------------------------------------------IFIL----- 178
           GFAYQK                                             IF       
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180

[Close]

BLAST of Lsi08G013690 vs. NCBI nr
Match: KAG6598466.1 (TLC domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-66
Identity = 145/233 (62.23%), Postives = 157/233 (67.38%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASIS 60
           M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASIS
Sbjct: 1   MAVSTGRDPDVINVVVLGVIAWTLAFISFRKLLPNRSFEFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAA 120
           VQNWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFDKKV++DN IHHLV IVGIAA
Sbjct: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120

Query: 121 GFAYQK---------------------------------------------IFIL----- 178
           GFAYQK                                             IF       
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180

[Close]

BLAST of Lsi08G013690 vs. NCBI nr
Match: XP_022961950.1 (transmembrane protein 56-B-like [Cucurbita moschata])

HSP 1 Score: 261.9 bits (668), Expect = 3.9e-66
Identity = 143/233 (61.37%), Postives = 157/233 (67.38%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASIS 60
           M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASIS
Sbjct: 1   MAVSTGRDPDVINVVVLGVIAWTLAFISFRKLLPNRSFEFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAA 120
           V+NWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFDKKV++DN IHHLV IVGIAA
Sbjct: 61  VKNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120

Query: 121 GFAYQKI----------------FILLTYYIIDITDNA---------------------- 178
           GFAYQK                 F+ L   + +I D                        
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGDRGTDLNLAADIGFAVIFSFGRMVG 180

[Close]

BLAST of Lsi08G013690 vs. NCBI nr
Match: XP_008444752.1 (PREDICTED: transmembrane protein 136 [Cucumis melo] >KAA0065207.1 transmembrane protein 136 [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 3.9e-66
Identity = 147/233 (63.09%), Postives = 161/233 (69.10%), Query Frame = 0


Query: 1   MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASI 60
           MEVS++RD D+ N+VV GVISWTLGF+ LRK++ PNRSFEFCNRLIST+HA LAVTLASI
Sbjct: 1   MEVSETRDPDIINVVVYGVISWTLGFVLLRKVVFPNRSFEFCNRLISTIHAFLAVTLASI 60

Query: 61  SVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIA 120
           SVQNWRCPICPLASKSS FQMQTL VSCSYLIYD+VCCHFDKKVSLDNTIHHLVSIVGIA
Sbjct: 61  SVQNWRCPICPLASKSSSFQMQTLGVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSIVGIA 120

Query: 121 AGFAYQK---------------------------------------------IFIL---- 178
           AGFAYQK                                             IF      
Sbjct: 121 AGFAYQKCGSEMVAALWITEISSPFLHLREILKEFGYRGTDLNLAADIGFAVIFSFARMV 180

[Close]

BLAST of Lsi08G013690 vs. TAIR 10
Match: AT1G35180.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-40
Identity = 93/217 (42.86%), Postives = 126/217 (58.06%), Query Frame = 0


Query: 11  VKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICP 70
           V +I  +GVISW L FI +R++  + SF+F  R++STLHA +AVTLA++S+Q+W CP+CP
Sbjct: 8   VISITTIGVISWGLIFILVRRIFSSYSFDFSTRIVSTLHATIAVTLATLSIQDWSCPVCP 67

Query: 71  LASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAAGFAYQK---- 130
           +AS SS  QM+TLA S SY+IYDL+C HFD+ +S+DN +HH V I+G  AG  YQK    
Sbjct: 68  IASTSSLRQMETLAFSLSYMIYDLICSHFDQVLSIDNAVHHSVCILGFVAGLFYQKCGSE 127

Query: 131 -----------------------------------------IFILLTY----YIIDITDN 173
                                                    IF L       Y++ +T +
Sbjct: 128 MVAALWITEISSPFLHLREILKEIGYRDTDLNLAADVCFATIFSLARMVGGPYLVYVTIS 187

[Close]

BLAST of Lsi08G013690 vs. TAIR 10
Match: AT1G45010.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 155.2 bits (391), Expect = 4.8e-38
Identity = 90/210 (42.86%), Postives = 116/210 (55.24%), Query Frame = 0


Query: 14  IVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLAS 73
           I+V GVISW + FI  R++  + SF F NRL+ST HA +AVTLA++SVQ+  CP+CPLAS
Sbjct: 11  IIVFGVISWGVAFILTRRIFSSYSFSFSNRLLSTAHATIAVTLATLSVQDLSCPVCPLAS 70

Query: 74  KSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAAGFAYQK--IFILL 133
           K S  QM  +A S SY+IYDL+CCHFD+  S+DN +HH VSI+G  AG AYQK    I+ 
Sbjct: 71  KPSHKQMDVMAFSLSYMIYDLICCHFDQVFSIDNAVHHFVSILGFIAGLAYQKSGSEIVA 130

Query: 134 TYYIIDIT--------------------------------------------------DN 169
           T ++ +I+                                                  DN
Sbjct: 131 TLWVAEISSPFFHLREILKEIGYKDTKLNLAADVCFATIFTLARIVCGPFLVYVSLSADN 190

[Close]

BLAST of Lsi08G013690 vs. TAIR 10
Match: AT1G35170.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 144.8 bits (364), Expect = 6.5e-35
Identity = 85/215 (39.53%), Postives = 120/215 (55.81%), Query Frame = 0


Query: 13  NIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLA 72
           +I  + +ISW L FI +R++  + SF+F  R++STLHA +AVTLA++S+Q+W CP+CP+A
Sbjct: 10  SITTIRIISWGLIFILVRRIFSSYSFDFSTRIVSTLHATIAVTLATLSIQDWSCPVCPIA 69

Query: 73  SKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAAGFAYQK------ 132
           S SS  QM+TLA S SY+IYDL+C HFD+ +S+DN +HH V I+G  AG  YQK      
Sbjct: 70  STSSLRQMETLAFSLSYMIYDLICSHFDQVLSIDNAVHHSVCILGFVAGLFYQKCGSEMV 129

Query: 133 ----------------------------------IFILLTY---------YIIDIT---D 173
                                             +F    +         Y++ +T   D
Sbjct: 130 AAIWITEISSPFLHLREILKEIGCRDTDLNLAADVFFATIFSVARMVGGPYLVYVTIPAD 189

The following BLAST results are available for this feature:

BLAST of Lsi08G013690 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G013690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDR0	1.9e-66	63.09	Transmembrane protein 136 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A6J1HDN8	1.9e-66	61.37	transmembrane protein 56-B-like OS=Cucurbita moschata OX=3662 GN=LOC111462571 PE...	[more]
A0A1S3BB19	1.9e-66	63.09	transmembrane protein 136 OS=Cucumis melo OX=3656 GN=LOC103487998 PE=4 SV=1	[more]
A0A0A0LLI2	5.5e-66	63.52	TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G362410 PE=4 SV...	[more]
A0A6J1K2K3	9.4e-66	62.23	transmembrane protein 136-like OS=Cucurbita maxima OX=3661 GN=LOC111491828 PE=4 ...	[more]

BLAST of Lsi08G013690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886579.1	1.0e-69	66.81	TLC domain-containing protein 5-like [Benincasa hispida]	[more]
KAG7029404.1	1.8e-66	62.66	Transmembrane protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6598466.1	2.3e-66	62.23	TLC domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022961950.1	3.9e-66	61.37	transmembrane protein 56-B-like [Cucurbita moschata]	[more]
XP_008444752.1	3.9e-66	63.09	PREDICTED: transmembrane protein 136 [Cucumis melo] >KAA0065207.1 transmembrane ...	[more]

BLAST of Lsi08G013690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35180.1	1.8e-40	42.86	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT1G45010.1	4.8e-38	42.86	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT1G35170.1	6.5e-35	39.53	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 35..169 e-value: 0.0046 score: 12.7
IPR006634	TRAM/LAG1/CLN8 homology domain	PFAM	PF03798	TRAM_LAG1_CLN8	coord: 39..140 e-value: 1.8E-7 score: 31.1
IPR006634	TRAM/LAG1/CLN8 homology domain	PROSITE	PS50922	TLC	coord: 35..177 score: 13.266198
IPR042512	TLC domain-containing protein 5	PANTHER	PTHR31898	TRANSMEMBRANE PROTEIN 136	coord: 142..172 coord: 11..127
None	No IPR available	PANTHER	PTHR31898:SF5	SUBFAMILY NOT NAMED	coord: 11..127
None	No IPR available	PANTHER	PTHR31898:SF5	SUBFAMILY NOT NAMED	coord: 142..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G013690.1	Lsi08G013690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane