Lsi08G012640 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G012640
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr08: 21062285 .. 21064154 (-)
RNA-Seq ExpressionLsi08G012640
SyntenyLsi08G012640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAACGAGCAACGGCAATCGACAGGGCCCTGGATCCTCGAAGCAATACCTTTCATGATTGTTCTTCTCATAGCAACTCATATCTTCGCTTTGGTACTCCCTAACTCCAATTTTTCTTCATTTTTGTCATTTGTATCCAAACTCTATACTCTCATGTTTGCTCACTGCCATTTAATTTCTGTAGGTATATTGGATTTACAGGTTAGCAACCCAAAAACAACCTCCAAGGAGGAAGGCACACTGAGTTACTGTATGATTCGTTCCTGAAAGAAACTGTAGTGAAAAAACCCCTAATTCGTTAATTGTTGTGTCACTGATGTTGAGGAGGCGGTAAAAAAAATCCGTATAACGATGTTTCTCTGTAAGTATCTGTCAGTGTGTACTCTCAGAATCTCAGTTTGGTATTTTAAGAATTTGGAAATGATTCTTGCAAATCAAATTTGATTTGTATGATTTTCAATTCATAAATTTGAAGGTGATCCTTTCATAAATGAGACATCTTGCTTGGTTTTCGTTACCTTGAAAGCTGGGTTAATTGCTGATTTACACTAATTTCATGAAAAAAAAAAACGTCGCATTTTCTAGGACTTTTCCACACTCACTTGGTAAATATAGTTATAGGTCTTAAGTTGTCGTTTGAAAGCATGCTTCCATTATGATAGGTGAAGAATCACCAGGTCAAGAAATGGTTGAAGACTTTTTATACTGAAATCCAGTATTAAAGTGATTTTATTCTGAAATCCATCTTTGAAGAGTCTGTTTTACATATAAACTTTTGCTATCGAAACTTGTAAAGAAAAAGGCGAAAACAGTTAGGAAAATATATCCTTGCTCTCGTTCTCTCATGAACAGCAACCGATTCTGCTTATTGTTCCAGGAAGAAATGGATTGCTGCTTGCTTCTTTTGGACTAATAACTCCATTAATTTTTCTCCTACTCCTAGCAGAGTTAGTGAACAGTGGCAAACTTTTGTAACTAGTCAAATTTTGCCTGAACTTGTCATCTGCTTTTAATTTCATTGCTTCTTCAGATGATCTTCGGAACTGATTGATTTGTACATTTTTTATTCTTGGACAGTCTGCAGACTCTATTTGGGTTTTGTATAGTCAAGAGTTCTCAAAGTAAACTTCAGCTTAATAGGTCAATATGGTTCTGTGCTAGAATTTTAGTTCTTCTGGATTAAGATCACCTAGGGTGTCAATCAAATGAGTGTTTTATGAAATTATAGATTTTAAAAGATTAGTCCAAGTGGCTTAATGAATGAAATTATACTTTTAACGAAAAGTCTAGTGATGAAGAAATTGAATATTCAAGATACTGTGTGAAAGAGGTAGATTTTGAGTTCTTATATTATGTGTTCTCGATAGTTAATACTAAATTTAAATGGTAAGTTTTTATAACATAATCTCATTTGCCTAAAGTCTCTAAAATTAGTGAAGGATAGTTTTCGGAATCAACACCAATCGAGGCTTGATGGAATCATAATTTAAATTTGATTTATTATACATTTGATATTCCCTTTGATATATGTGGCTTAGCTTTACATATGTATTTTCCCATGTAAAGTGTTTGAGCTATTATCTTTGGTGTATCTGTTACTGTTAAGTAAATATTAGAGTCGACTTTATGCTAACCAGGATAGTTGCTATATATTGTCATCCTCACCCATACCTTTCCTGAGATATTGAGTCCAAATTATCGTTTGGATACAACGTTGAATGATGGACAAGGTGGAGTAAGGCATTTACACCTAACGTCAGCCATGGTGTGTTCCTTCATATGGGTGCTCATAGTTGTCATGACTCATGATCACCATTTTGTGGTATTCTTTTTGCCTCTCCAGCCTAGGAATAAAGATAATCTTTAG

mRNA sequence

ATGGCGAACGAGCAACGGCAATCGACAGGGCCCTGGATCCTCGAAGCAATACCTTTCATGATTGTTCTTCTCATAGCAACTCATATCTTCGCTTTGGTACTCCCTAACTCCAATTTTTCTTCATTTTTGTCATTTGTATCCAAACTCTATACTCTCATGTTTGCTCACTGCCATTTAATTTCTGTAGGTATATTGGATTTACAGTTGCTATATATTGTCATCCTCACCCATACCTTTCCTGAGATATTGAGTCCAAATTATCGTTTGGATACAACGTTGAATGATGGACAAGGTGGAGTAAGGCATTTACACCTAACGTCAGCCATGGTGTGTTCCTTCATATGGGTGCTCATAGTTGTCATGACTCATGATCACCATTTTGTGGTATTCTTTTTGCCTCTCCAGCCTAGGAATAAAGATAATCTTTAG

Coding sequence (CDS)

ATGGCGAACGAGCAACGGCAATCGACAGGGCCCTGGATCCTCGAAGCAATACCTTTCATGATTGTTCTTCTCATAGCAACTCATATCTTCGCTTTGGTACTCCCTAACTCCAATTTTTCTTCATTTTTGTCATTTGTATCCAAACTCTATACTCTCATGTTTGCTCACTGCCATTTAATTTCTGTAGGTATATTGGATTTACAGTTGCTATATATTGTCATCCTCACCCATACCTTTCCTGAGATATTGAGTCCAAATTATCGTTTGGATACAACGTTGAATGATGGACAAGGTGGAGTAAGGCATTTACACCTAACGTCAGCCATGGTGTGTTCCTTCATATGGGTGCTCATAGTTGTCATGACTCATGATCACCATTTTGTGGTATTCTTTTTGCCTCTCCAGCCTAGGAATAAAGATAATCTTTAG

Protein sequence

MANEQRQSTGPWILEAIPFMIVLLIATHIFALVLPNSNFSSFLSFVSKLYTLMFAHCHLISVGILDLQLLYIVILTHTFPEILSPNYRLDTTLNDGQGGVRHLHLTSAMVCSFIWVLIVVMTHDHHFVVFFLPLQPRNKDNL
Homology
[Close]
BLAST of Lsi08G012640 vs. NCBI nr
Match: KAG7029467.1 (hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 5.3e-05
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1  MANEQRQSTGPWILEAIPFMIVLLIATHIFALV 34
          MANE+R STGPWILEA+PF++VLLIA H+FALV
Sbjct: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALV 33

[Close]
BLAST of Lsi08G012640 vs. NCBI nr
Match: KAG7020426.1 (hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-04
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 1  MANEQRQSTGPWILEAIPFMIVLLIATHIFALV 34
          MANEQR S GPW LEAIP +IVLLIA H+FALV
Sbjct: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV 33

The following BLAST results are available for this feature:
BLAST of Lsi08G012640 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G012640 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G012640 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029467.15.3e-0578.79hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7020426.14.5e-0478.79hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Lsi08G012640 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G012640.1Lsi08G012640.1mRNA