Lsi08G011990 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G011990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP synthase subunit alpha, chloroplastic
Location	chr08: 20555288 .. 20555512 (-)
RNA-Seq Expression	Lsi08G011990
Synteny	Lsi08G011990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAGGGGGCCAGTCCAAGATCGTACTGTTGCTCTACAAAGACAACAGACGCTCTCAACGGCTAGGCGCCACTCTCTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACCGATGGACAAATATTCTTATCTGCCGATCTATTCAATTCTGGAATCAGACCTGCTATTAATGTGGGTATTTCCGTCTCCAGAGTAGGATCTGCAGCTCATGGGAAATAG

mRNA sequence

ATGCGAAGGGGGCCAGTCCAAGATCGTACTGTTGCTCTACAAAGACAACAGACGCTCTCAACGGCTAGGCGCCACTCTCTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACCGATGGACAAATATTCTTATCTGCCGATCTATTCAATTCTGGAATCAGACCTGCTATTAATGTGGGTATTTCCGTCTCCAGAGTAGGATCTGCAGCTCATGGGAAATAG

Coding sequence (CDS)

ATGCGAAGGGGGCCAGTCCAAGATCGTACTGTTGCTCTACAAAGACAACAGACGCTCTCAACGGCTAGGCGCCACTCTCTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACCGATGGACAAATATTCTTATCTGCCGATCTATTCAATTCTGGAATCAGACCTGCTATTAATGTGGGTATTTCCGTCTCCAGAGTAGGATCTGCAGCTCATGGGAAATAG

Protein sequence

MRRGPVQDRTVALQRQQTLSTARRHSLSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

Homology

[Close]

BLAST of Lsi08G011990 vs. ExPASy Swiss-Prot
Match: Q8S8Y3 (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-16
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQIK 374

[Close]

BLAST of Lsi08G011990 vs. ExPASy Swiss-Prot
Match: Q8MA05 (ATP synthase subunit alpha, chloroplastic OS=Chaetosphaeridium globosum OX=96477 GN=atpA PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-16
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQIK 374

[Close]

BLAST of Lsi08G011990 vs. ExPASy Swiss-Prot
Match: A4QL91 (ATP synthase subunit alpha, chloroplastic OS=Lepidium virginicum OX=59292 GN=atpA PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-16
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQIK 374

[Close]

BLAST of Lsi08G011990 vs. ExPASy Swiss-Prot
Match: Q09FX6 (ATP synthase subunit alpha, chloroplastic OS=Nandina domestica OX=41776 GN=atpA PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-16
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQIK 374

[Close]

BLAST of Lsi08G011990 vs. ExPASy Swiss-Prot
Match: Q3C1H4 (ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=atpA PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-16
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQIK 374

[Close]

BLAST of Lsi08G011990 vs. ExPASy TrEMBL
Match: A0A140H9Z2 (ATP synthase subunit alpha, chloroplastic OS=Kirchneriella aperta OX=117505 GN=atpA PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQPK 374

[Close]

BLAST of Lsi08G011990 vs. ExPASy TrEMBL
Match: A0A386AXA0 (ATP synthase subunit alpha, chloroplastic OS=Flabellia petiolata OX=189428 GN=atpA PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADIFNSGIRPAINVGISVSRVGSAAQSK 374

[Close]

BLAST of Lsi08G011990 vs. ExPASy TrEMBL
Match: A0A0D6E2B0 (ATP synthase subunit alpha, chloroplastic OS=Tydemania expeditionis OX=325645 GN=atpA PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADIFNSGIRPAINVGISVSRVGSAAQSK 374

[Close]

BLAST of Lsi08G011990 vs. ExPASy TrEMBL
Match: A0A386AY50 (ATP synthase subunit alpha, chloroplastic OS=Pseudochlorodesmis sp. HV01306b OX=2358489 GN=atpA PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADIFNSGIRPAINVGISVSRVGSAAQAK 374

[Close]

BLAST of Lsi08G011990 vs. ExPASy TrEMBL
Match: A0A2Z6FBN8 (ATP synthase subunit alpha, chloroplastic OS=Raphidocelis subcapitata OX=307507 GN=atpA PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQPK 374

[Close]

BLAST of Lsi08G011990 vs. NCBI nr
Match: AYQ94510.1 (CF1 alpha subunit of ATP synthase [Cylindrocapsa geminella])

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-14
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQPK 374

[Close]

BLAST of Lsi08G011990 vs. NCBI nr
Match: AYC64609.1 (ATP synthase CF1 subunit alpha [Halimeda minima])

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADIFNSGIRPAINVGISVSRVGSAAQAK 374

[Close]

BLAST of Lsi08G011990 vs. NCBI nr
Match: YP_009519687.1 (ATP synthase CF1 subunit alpha [Udotea flabellum] >AYC65635.1 ATP synthase CF1 subunit alpha [Udotea flabellum])

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Sbjct: 325 VSAYIPTNVISITDGQIFLSADIFNSGIRPAINVGISVSRVGSAAQSK 372

[Close]

BLAST of Lsi08G011990 vs. NCBI nr
Match: AYC64355.1 (ATP synthase CF1 subunit alpha [Pseudochlorodesmis sp. HV01306a])

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADIFNSGIRPAINVGISVSRVGSAAQAK 374

[Close]

BLAST of Lsi08G011990 vs. NCBI nr
Match: YP_009238070.1 (CF1 alpha subunit of ATP synthase [Neochloris aquatica] >AMO00879.1 CF1 alpha subunit of ATP synthase [Neochloris aquatica])

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-14
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQPK 374

[Close]

BLAST of Lsi08G011990 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-17
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSAA  K
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIK 374

[Close]

BLAST of Lsi08G011990 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-13
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQI L  +LF  GIRPAINVG+SVSRVGSAA  K
Sbjct: 607 VSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLK 654

[Close]

BLAST of Lsi08G011990 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-13
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 27  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK 75
           +SAYIPTNVISITDGQI L  +LF  GIRPAINVG+SVSRVGSAA  K
Sbjct: 337 VSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLK 384

The following BLAST results are available for this feature:

BLAST of Lsi08G011990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8Y3	2.1e-16	93.75	ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA ...	[more]
Q8MA05	2.1e-16	93.75	ATP synthase subunit alpha, chloroplastic OS=Chaetosphaeridium globosum OX=96477...	[more]
A4QL91	2.1e-16	93.75	ATP synthase subunit alpha, chloroplastic OS=Lepidium virginicum OX=59292 GN=atp...	[more]
Q09FX6	2.1e-16	93.75	ATP synthase subunit alpha, chloroplastic OS=Nandina domestica OX=41776 GN=atpA ...	[more]
Q3C1H4	2.1e-16	93.75	ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=atp...	[more]

BLAST of Lsi08G011990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A140H9Z2	4.6e-14	93.75	ATP synthase subunit alpha, chloroplastic OS=Kirchneriella aperta OX=117505 GN=a...	[more]
A0A386AXA0	4.6e-14	91.67	ATP synthase subunit alpha, chloroplastic OS=Flabellia petiolata OX=189428 GN=at...	[more]
A0A0D6E2B0	4.6e-14	91.67	ATP synthase subunit alpha, chloroplastic OS=Tydemania expeditionis OX=325645 GN...	[more]
A0A386AY50	4.6e-14	91.67	ATP synthase subunit alpha, chloroplastic OS=Pseudochlorodesmis sp. HV01306b OX=...	[more]
A0A2Z6FBN8	4.6e-14	93.75	ATP synthase subunit alpha, chloroplastic OS=Raphidocelis subcapitata OX=307507 ...	[more]

BLAST of Lsi08G011990 vs. NCBI nr


Match Name	E-value	Identity	Description
AYQ94510.1	9.4e-14	93.75	CF1 alpha subunit of ATP synthase [Cylindrocapsa geminella]	[more]
AYC64609.1	9.4e-14	91.67	ATP synthase CF1 subunit alpha [Halimeda minima]	[more]
YP_009519687.1	9.4e-14	91.67	ATP synthase CF1 subunit alpha [Udotea flabellum] >AYC65635.1 ATP synthase CF1 s...	[more]
AYC64355.1	9.4e-14	91.67	ATP synthase CF1 subunit alpha [Pseudochlorodesmis sp. HV01306a]	[more]
YP_009238070.1	9.4e-14	93.75	CF1 alpha subunit of ATP synthase [Neochloris aquatica] >AMO00879.1 CF1 alpha su...	[more]

BLAST of Lsi08G011990 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00120.1	3.3e-17	91.67	ATP synthase subunit alpha	[more]
AT2G07698.1	1.7e-13	79.17	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	1.7e-13	79.17	ATP synthase subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	PFAM	PF00006	ATP-synt_ab	coord: 8..65 e-value: 1.1E-10 score: 41.6
None	No IPR available	GENE3D	3.40.50.12240		coord: 16..74 e-value: 1.1E-20 score: 75.9
None	No IPR available	PANTHER	PTHR48082	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 25..72
None	No IPR available	PANTHER	PTHR48082:SF4	ATP SYNTHASE SUBUNIT ALPHA	coord: 25..72
IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	PROSITE	PS00152	ATPASE_ALPHA_BETA	coord: 56..65
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 24..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G011990.1	Lsi08G011990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism