Lsi08G011260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G011260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Methionyl-tRNA synthetase
Location	chr08: 19893688 .. 19895830 (-)
RNA-Seq Expression	Lsi08G011260
Synteny	Lsi08G011260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATGTAATACAAATAAAATAATTTCACAATTTATTTCACGTATACAAGTGTAAAATGTTTAATTATTAATTTACATATGTATCTTTAATATATATATATATATTTTTTTTTACATTTTAAAATATATCCATCAATATCAATATTTTTATGTCAATAAATTTGAGACTTTAACATTTTCATTGACATAAACATTTTAAACCTTGAATTTCAATATTTTTTCCTTTAAAAACAAAACAATCACAAATGACTTAGGTCCCTATATTTACAATTTTGATTCATTTTGGCTCTTATATTTCCAAAATATCTATTTTAGTCCTTATATTTACAGCAATCGTTCATTTAATTCTTGGACTTTTGGAATATTTATTTTAGTTTCTCTACTTTTAAAAAATAACCATTATGGTCCTTTCATTTTTATATTATAATATATTTAGATCAAAATTATATCATGACACTTTATTCACTAAATCATTTAAAACTTAGCCATAAATCTATACTAAAGAGGTTTCATTGTTTGTACTAGGTGATAGTCTGTTCGATTTTGTCCGTTTTGAGGTCAACTAAGAATCAAACAAAATCAATTGGAGATATCCAATAAACAACAAAACCATTGGATTGATTTTTATTTGGTTCGATTTATTATCAGTTTGATTCTCAATTTGGTTCTCGATTTTGACATTTTTTTTCTTTCAAATTTTAATTTATATTTCTAATATTTTTTTGAATTAGTCATTTTTGCTAATTTTAAATTAAAATGGGGTCTATTTCTTTTCTTATAGATTGAAATTAGACATTTTTTTGACACTTTCTAAATAAAAAACACACACTCCACAATAATTAGTATTTTTTCTAAAACAATAAATATATATGCACCATAATAATTAAAATACTAAAAAATATCTAATGTTAGAGTTTATTTTTAAGGGTATATATACCATGACTTCAATTTTGATTAGTTTTTCCAATCAAAATCCAATCCAAATCAATACATATGTCTAATTTTATACTAAAAAAATCAAACCAAACCAGTTGATCGACTTAGATTAGTTTGGTTTTTCAATTTTTAGTTGCACTCCTAGTTTGTACAACTTATGTTAAAACTTTGCGAATCAAAATCAAAATTGTCAAATTTTAAAATATACAAACTAAAATGAATAAAATAAAGAGTATAAAATCAAAACAAACATTTTAAAAGTATAAAAACCACACAATTAGAGTATGGAACCAAAAATTTTAAAAGTAAGTAAATAAATAAAAATAATAATAATAATAATAAGCAACAACTAATTTTGAACCACAACCAAAGCATCACTCTTAGATTCTCATGACTACCTACGGTTTGAGAGGTTGAAATGTAATAAAGATTATTGAAAATCAGATGAGTGTTGGAATGTGTAAGGTATCGAAGACAGAATAGAAATGAAATCGTGACATGTGAAAGTGGTGGGAGAGAATGTTTGATTAAAAACTGTCGAAATGGAATGAGTTTAATATTACAAATTCGGTCCAAAATACTCCATCCAAACATAGATTTTAGATTACATTACAATCTAAACCCATTTCAATATGGTCCCAAACCGCTAATGGGAAGGAAGGATAAATTCGATTTGACAAAGAAGCCAAAAGGATTGGTCAAAGTCCAAAGTCAACAGTCCACGTATTATTATTGTCAAAGACAAGGGTCAACTTTCTTCGGAACGCAATAATTTTCTTCGCCTAGTTTCGAGAATAAGTCAGAAACTTCTAGAGATACACGGTTCTCCATATCCCCTCAAATTCCACGAAACTTCCTTCTCTTTCTCTATAAAAACATCAAAGCTCACAACTTCCCTGATCCTAGACTTTTCATCCAAAACCCAGAAAAGAAAACAACAAACAACAGCAGAAAGAAATCCCTCAGCCAGGAAAGCAAGAAGAACCTAAAGGAAGAGAAAAATATGTGTTTGGTATTTGTTTGCGATGAAGATCAGAGAGTATTATCAAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGCGGAGGTATTATCCAAGCCACCGACATTGAAAGCCAATGGAGGTTCTGTTTCCTCCCTCTTTACTGGAAAACCAAACGAAAGTTCTATTGCACTATGTGCACCAGACAACTCGTTATGAAGTAG

mRNA sequence

ATGTTAATTTTCGAGAATAAGTCAGAAACTTCTAGAGATACACGGTTCTCCATATCCCCTCAAATTCCACGAAACTTCCTTCTCTTTCTCTATAAAAACATCAAAGCTCACAACTTCCCTGATCCTAGACTTTTCATCCAAAACCCAGAAAAGAAAACAACAAACAACAGCAGAAAGAAATCCCTCAGCCAGGAAAGCAAGAAGAACCTAAAGGAAGAGAAAAATATGTGTTTGGTATTTGTTTGCGATGAAGATCAGAGAGTATTATCAAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGCGGAGGTATTATCCAAGCCACCGACATTGAAAGCCAATGGAGGTTCTGTTTCCTCCCTCTTTACTGGAAAACCAAACGAAAGTTCTATTGCACTATGTGCACCAGACAACTCGTTATGAAGTAG

Coding sequence (CDS)

ATGTTAATTTTCGAGAATAAGTCAGAAACTTCTAGAGATACACGGTTCTCCATATCCCCTCAAATTCCACGAAACTTCCTTCTCTTTCTCTATAAAAACATCAAAGCTCACAACTTCCCTGATCCTAGACTTTTCATCCAAAACCCAGAAAAGAAAACAACAAACAACAGCAGAAAGAAATCCCTCAGCCAGGAAAGCAAGAAGAACCTAAAGGAAGAGAAAAATATGTGTTTGGTATTTGTTTGCGATGAAGATCAGAGAGTATTATCAAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGCGGAGGTATTATCCAAGCCACCGACATTGAAAGCCAATGGAGGTTCTGTTTCCTCCCTCTTTACTGGAAAACCAAACGAAAGTTCTATTGCACTATGTGCACCAGACAACTCGTTATGAAGTAG

Protein sequence

MLIFENKSETSRDTRFSISPQIPRNFLLFLYKNIKAHNFPDPRLFIQNPEKKTTNNSRKKSLSQESKKNLKEEKNMCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCTRQLVMK

Homology

[Close]

BLAST of Lsi08G011260 vs. ExPASy TrEMBL
Match: A0A1S3BCK8 (uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 9.3e-32
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDEDQRVLSRQPAPGACPFCGG+IQATD+ESQWRFCF+PLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 136 RQLVMK 142
           RQLVM+
Sbjct: 61  RQLVMQ 66

[Close]

BLAST of Lsi08G011260 vs. ExPASy TrEMBL
Match: A0A6J1KC13 (uncharacterized protein LOC111491925 OS=Cucurbita maxima OX=3661 GN=LOC111491925 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDEDQRVLSRQPAPGACPFCGG+IQATD+ESQWRFCFLPLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 136 RQLVMK 142
           RQLV++
Sbjct: 61  RQLVIQ 66

[Close]

BLAST of Lsi08G011260 vs. ExPASy TrEMBL
Match: A0A6J1HDM3 (uncharacterized protein LOC111462635 OS=Cucurbita moschata OX=3662 GN=LOC111462635 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDEDQRVLSRQPAPGACPFCGG+IQATD+ESQWRFCFLPLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 136 RQLVMK 142
           RQLV++
Sbjct: 61  RQLVIQ 66

[Close]

BLAST of Lsi08G011260 vs. ExPASy TrEMBL
Match: A0A6P3Z2S4 (uncharacterized protein LOC107405842 OS=Ziziphus jujuba OX=326968 GN=LOC107405842 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 54/66 (81.82%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDED+RV+SRQPAPGACP+CGG++QA D+ESQWRFCFLPLYWKTKRKFYC++CT
Sbjct: 1   MCLVFVCDEDERVVSRQPAPGACPYCGGMVQAMDVESQWRFCFLPLYWKTKRKFYCSLCT 60

Query: 136 RQLVMK 142
           R+LV++
Sbjct: 61  RRLVVQ 66

[Close]

BLAST of Lsi08G011260 vs. ExPASy TrEMBL
Match: A0A6J1BVT7 (uncharacterized protein LOC111005173 OS=Momordica charantia OX=3673 GN=LOC111005173 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 54/66 (81.82%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDE+QRVLSRQPAPGACPFCGG++QATDI++QW FCFLPLYWKTKRK YC++CT
Sbjct: 1   MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60

Query: 136 RQLVMK 142
           R+LV++
Sbjct: 61  RELVVQ 66

[Close]

BLAST of Lsi08G011260 vs. NCBI nr
Match: KAG7029748.1 (hypothetical protein SDJN02_08090, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.8 bits (382), Expect = 4.6e-33
Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 32  KNIKAHNFPDPRLFIQNPEKKTTNNS--RKKSLSQESKKNLKEEKNMCLVFVCDEDQRVL 91
           K+ K+   P  R   QNP+KK+ +     ++SL  + K+  +    MCLVFVCDEDQRVL
Sbjct: 27  KSSKSTTLP-TRFITQNPKKKSGSKQTITERSLEAKEKQEPEGGDKMCLVFVCDEDQRVL 86

Query: 92  SRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCTRQLVMK 142
           SRQPAPGACPFCGG+IQATD+ESQWRFCFLPLYWKTKRKFYCTMCTRQLV++
Sbjct: 87  SRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCTRQLVIQ 137

[Close]

BLAST of Lsi08G011260 vs. NCBI nr
Match: XP_038884125.1 (uncharacterized protein LOC120075047 [Benincasa hispida])

HSP 1 Score: 147.5 bits (371), Expect = 8.6e-32
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDEDQRVLSRQPAPGACPFCGG+IQATD+ESQWRFCFLPLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 136 RQLVMK 142
           RQLVM+
Sbjct: 61  RQLVMQ 66

[Close]

BLAST of Lsi08G011260 vs. NCBI nr
Match: XP_008445081.1 (PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-31
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDEDQRVLSRQPAPGACPFCGG+IQATD+ESQWRFCF+PLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 136 RQLVMK 142
           RQLVM+
Sbjct: 61  RQLVMQ 66

[Close]

BLAST of Lsi08G011260 vs. NCBI nr
Match: XP_022962063.1 (uncharacterized protein LOC111462635 [Cucurbita moschata] >XP_022996793.1 uncharacterized protein LOC111491925 [Cucurbita maxima] >XP_023546190.1 uncharacterized protein LOC111805366 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-31
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDEDQRVLSRQPAPGACPFCGG+IQATD+ESQWRFCFLPLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 136 RQLVMK 142
           RQLV++
Sbjct: 61  RQLVIQ 66

[Close]

BLAST of Lsi08G011260 vs. NCBI nr
Match: XP_004138769.1 (uncharacterized protein LOC101206986 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 5.6e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCDEDQRVLSRQPAPG CPFCGG+IQATD+ESQWRFCF+PLYWKTKRKFYCTMCT
Sbjct: 1   MCLVFVCDEDQRVLSRQPAPGVCPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 136 RQLVMK 142
           RQLVM+
Sbjct: 61  RQLVMQ 66

[Close]

BLAST of Lsi08G011260 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-21
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCD+D+RV+ R  APGACP+CGG +Q  D+ SQWRFCF+PL  K+KR+  C+ C 
Sbjct: 1   MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 136 RQLVM 141
           ++L++
Sbjct: 61  KRLIV 65

[Close]

BLAST of Lsi08G011260 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-19
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLV +CDE++  L RQ APG+CP+CGG +Q  D+E +W FCF+PL +K KRK+ C+ C 
Sbjct: 1   MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 136 RQLVM 141
           R+LV+
Sbjct: 61  RRLVL 65

[Close]

BLAST of Lsi08G011260 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-17
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCL  V  E++  L RQ APG CP+CGG + A DIE++W FCFLPL +K KRK+ C+ C 
Sbjct: 1   MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 136 RQLVM 141
           R LV+
Sbjct: 61  RHLVL 65

[Close]

BLAST of Lsi08G011260 vs. TAIR 10
Match: AT1G52855.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-09
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMC 135
           +C  F+ D+ ++V   +PA G C  CG      D+++  RFCF+P+YW++ R   C+ C
Sbjct: 2   VCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

[Close]

BLAST of Lsi08G011260 vs. TAIR 10
Match: AT5G10695.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages. )

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-05
Identity = 23/65 (35.38%), Postives = 34/65 (52.31%), Query Frame = 0


Query: 76  MCLVFVCDEDQRVLSRQPAPGACPFCGGIIQATDIESQWRFCFLPLYWKTKRKFYCTMCT 135
           MCLVFVCD+D+RV+                         RFCF+PL  K+KR+  C+ C 
Sbjct: 1   MCLVFVCDQDERVIG------------------------RFCFVPLSNKSKRRHLCSTCG 41

Query: 136 RQLVM 141
           ++L++
Sbjct: 61  KRLIV 41

The following BLAST results are available for this feature:

BLAST of Lsi08G011260 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G011260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BCK8	9.3e-32	93.94	uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=...	[more]
A0A6J1KC13	1.2e-31	93.94	uncharacterized protein LOC111491925 OS=Cucurbita maxima OX=3661 GN=LOC111491925...	[more]
A0A6J1HDM3	1.2e-31	93.94	uncharacterized protein LOC111462635 OS=Cucurbita moschata OX=3662 GN=LOC1114626...	[more]
A0A6P3Z2S4	1.6e-28	81.82	uncharacterized protein LOC107405842 OS=Ziziphus jujuba OX=326968 GN=LOC10740584...	[more]
A0A6J1BVT7	1.1e-27	81.82	uncharacterized protein LOC111005173 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of Lsi08G011260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029748.1	4.6e-33	66.07	hypothetical protein SDJN02_08090, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038884125.1	8.6e-32	95.45	uncharacterized protein LOC120075047 [Benincasa hispida]	[more]
XP_008445081.1	1.9e-31	93.94	PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo]	[more]
XP_022962063.1	2.5e-31	93.94	uncharacterized protein LOC111462635 [Cucurbita moschata] >XP_022996793.1 unchar...	[more]
XP_004138769.1	5.6e-31	92.42	uncharacterized protein LOC101206986 [Cucumis sativus]	[more]

BLAST of Lsi08G011260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10695.1	2.5e-21	58.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G57123.1	3.1e-19	55.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G29905.1	2.9e-17	55.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G52855.1	2.2e-09	35.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10695.2	3.3e-05	35.38	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_c...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..69
None	No IPR available	PANTHER	PTHR33320:SF20	METHIONYL-TRNA SYNTHETASE	coord: 76..141
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 76..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G011260.1	Lsi08G011260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity