Lsi08G010190 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G010190
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	TPR_REGION domain-containing protein
Location	chr08: 18759884 .. 18760519 (-)
RNA-Seq Expression	Lsi08G010190
Synteny	Lsi08G010190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCCTCGCTATGCACAACATTCCACAGAGATACTTTGCCAAGCTCCGATTGCGCTTTCGATCTGACGTCGAATCCAAACGCCACTTCGTGAGAGGGGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCCTCGGCCACTTCGTTAGCGGAAGAAGTCGTAGCGGAAGCTGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAAGCTTTGGCTCTCGACATTCAAGGATTCAAAACCTCTGCTCTGGAATCGCTCGATACGGCTCTGTCGCCGCTCGTCGCTAAGTCGCTCAGCGATGAGGAGCGAGGCGACGCGTTGTCCAAGCGAGCTGAGTTGAAGATGTCCACGAACCGGCGAGCCCTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCCGTGACACTGAGTCAGAATGCAAATTCCTACTATTGGTTGGGGAAATGCTACGAGATCAAGAAACTGAGAGGAGAGGCCACGAAAGCATATGAAGAATCTTTGAACATCGAACCACGATTATCCAACGCTAGGGAGGCATTGGAACGTCTATCATCATCGTAA

mRNA sequence

ATGGTGACCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCCTCGCTATGCACAACATTCCACAGAGATACTTTGCCAAGCTCCGATTGCGCTTTCGATCTGACGTCGAATCCAAACGCCACTTCGTGAGAGGGGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCCTCGGCCACTTCGTTAGCGGAAGAAGTCGTAGCGGAAGCTGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAAGCTTTGGCTCTCGACATTCAAGGATTCAAAACCTCTGCTCTGGAATCGCTCGATACGGCTCTGTCGCCGCTCGTCGCTAAGTCGCTCAGCGATGAGGAGCGAGGCGACGCGTTGTCCAAGCGAGCTGAGTTGAAGATGTCCACGAACCGGCGAGCCCTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCCGTGACACTGAGTCAGAATGCAAATTCCTACTATTGGTTGGGGAAATGCTACGAGATCAAGAAACTGAGAGGAGAGGCCACGAAAGCATATGAAGAATCTTTGAACATCGAACCACGATTATCCAACGCTAGGGAGGCATTGGAACGTCTATCATCATCGTAA

Coding sequence (CDS)

ATGGTGACCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCCTCGCTATGCACAACATTCCACAGAGATACTTTGCCAAGCTCCGATTGCGCTTTCGATCTGACGTCGAATCCAAACGCCACTTCGTGAGAGGGGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCCTCGGCCACTTCGTTAGCGGAAGAAGTCGTAGCGGAAGCTGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAAGCTTTGGCTCTCGACATTCAAGGATTCAAAACCTCTGCTCTGGAATCGCTCGATACGGCTCTGTCGCCGCTCGTCGCTAAGTCGCTCAGCGATGAGGAGCGAGGCGACGCGTTGTCCAAGCGAGCTGAGTTGAAGATGTCCACGAACCGGCGAGCCCTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCCGTGACACTGAGTCAGAATGCAAATTCCTACTATTGGTTGGGGAAATGCTACGAGATCAAGAAACTGAGAGGAGAGGCCACGAAAGCATATGAAGAATCTTTGAACATCGAACCACGATTATCCAACGCTAGGGAGGCATTGGAACGTCTATCATCATCGTAA

Protein sequence

MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVAKSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKLRGEATKAYEESLNIEPRLSNAREALERLSSS

Homology

[Close]

BLAST of Lsi08G010190 vs. ExPASy TrEMBL
Match: A0A5A7VBU3 (TPR domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004320 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.1e-96
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD+QGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDVQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE+KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEMKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           R EA KAYEE+LNIEPRLSNAREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Lsi08G010190 vs. ExPASy TrEMBL
Match: A0A1S3BC86 (uncharacterized protein LOC103488119 OS=Cucumis melo OX=3656 GN=LOC103488119 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.1e-96
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD+QGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDVQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE+KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEMKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           R EA KAYEE+LNIEPRLSNAREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Lsi08G010190 vs. ExPASy TrEMBL
Match: A0A0A0LPL8 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370460 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.0e-95
Identity = 203/211 (96.21%), Postives = 206/211 (97.63%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD QGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           R EA KAYEE+LNIEPRLSNAREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Lsi08G010190 vs. ExPASy TrEMBL
Match: A0A6J1GK03 (uncharacterized protein LOC111454602 OS=Cucurbita moschata OX=3662 GN=LOC111454602 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.4e-92
Identity = 196/211 (92.89%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRSDVESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAE+VVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLS+EERGDAL KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE+KKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           RGEA KAYEE+LNIEPRLS AREALERLSSS
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 211

[Close]

BLAST of Lsi08G010190 vs. ExPASy TrEMBL
Match: A0A6J1KRQ5 (uncharacterized protein LOC111496615 OS=Cucurbita maxima OX=3661 GN=LOC111496615 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.1e-92
Identity = 195/211 (92.42%), Postives = 204/211 (96.68%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRSDVESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAE+VVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLS+EERGDAL KRAELKMSTNRRA+VDSA+ADLTESVTLSQNAN+Y WLGKCYE+KKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRAVVDSAMADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           RGEA KAYEE+LNIEPRLS AREALERLS+S
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSTS 211

[Close]

BLAST of Lsi08G010190 vs. NCBI nr
Match: XP_038884950.1 (uncharacterized protein LOC120075535 [Benincasa hispida])

HSP 1 Score: 365.2 bits (936), Expect = 3.9e-97
Identity = 206/211 (97.63%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MVTDILLQI LILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIVLILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           RGEA KAYEE+LNIEPRLSNAREALERLSSS
Sbjct: 181 RGEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Lsi08G010190 vs. NCBI nr
Match: XP_008444918.1 (PREDICTED: uncharacterized protein LOC103488119 [Cucumis melo] >KAA0065098.1 TPR domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD+QGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDVQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE+KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEMKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           R EA KAYEE+LNIEPRLSNAREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Lsi08G010190 vs. NCBI nr
Match: XP_004152601.1 (uncharacterized protein LOC101214199 [Cucumis sativus] >KGN62747.1 hypothetical protein Csa_021843 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 6.3e-95
Identity = 203/211 (96.21%), Postives = 206/211 (97.63%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAEEVVAEA+KAIALDPKDAAAHILKALALD QGFKTSALESLDTALSPLVA
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLSDEERGDAL KRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYE KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           R EA KAYEE+LNIEPRLSNAREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Lsi08G010190 vs. NCBI nr
Match: XP_023537835.1 (uncharacterized protein LOC111798743 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.7 bits (896), Expect = 1.7e-92
Identity = 197/211 (93.36%), Postives = 204/211 (96.68%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRSDVESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAE+VVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLS+EERGDAL KRAELKMSTNRRA+VDSALADLTESVTLSQNAN+Y WLGKCYE+KKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRAVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           RGEA KAYEE+LNIEPRLS AREALERLSSS
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 211

[Close]

BLAST of Lsi08G010190 vs. NCBI nr
Match: XP_022951869.1 (uncharacterized protein LOC111454602 [Cucurbita moschata] >KAG6585344.1 hypothetical protein SDJN03_18077, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 348.2 bits (892), Expect = 5.0e-92
Identity = 196/211 (92.89%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRSDVESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVA 120
           PSRSSATSLAE+VVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEIKKL 180
           KSLS+EERGDAL KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE+KKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 RGEATKAYEESLNIEPRLSNAREALERLSSS 212
           RGEA KAYEE+LNIEPRLS AREALERLSSS
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 211

[Close]

BLAST of Lsi08G010190 vs. TAIR 10
Match: AT5G65520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-34
Identity = 88/201 (43.78%), Postives = 133/201 (66.17%), Query Frame = 0


Query: 3   TDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSDVESKRHFVRGAQLLARARSAPS 62
           T+ ++Q A++++ +VMF A+  + QR   K R + R+ ++++R  ++ ++LLARAR+ P 
Sbjct: 4   TETIIQGAILVLTLVMFWAIKYLSQRGLTKFRTKHRATLQTQRQLIQASRLLARARTTPK 63

Query: 63  RSSATSLAEEVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLVAKS 122
           +S + SLA+  + EAD  IA+ P DAA HI++ALALD+ G  TSAL+S D AL+    KS
Sbjct: 64  KSQSQSLAKTALTEADNVIAISPDDAAGHIVRALALDLLGHHTSALKSFDMALTYPRLKS 123

Query: 123 LSDEERGDALSKRAELKMSTNRRALVDSALADLTESVTL---SQNANSYYWLGKCYEIKK 182
           LS  ER DAL KRAE+K++ NRR  +DSA+ DL E+V L   +  A  +  LG+CYE K 
Sbjct: 124 LSVGERADALVKRAEMKLAVNRRRRIDSAVEDLEEAVRLAAGTDTARLFRLLGECYEFKG 183

Query: 183 LRGEATKAYEESLNIEPRLSN 201
           L+ +A  A+ E+L  +P   N
Sbjct: 184 LKEKAQWAFNEALKAQPSSVN 204

The following BLAST results are available for this feature:

BLAST of Lsi08G010190 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G010190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBU3	6.1e-96	96.21	TPR domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00...	[more]
A0A1S3BC86	6.1e-96	96.21	uncharacterized protein LOC103488119 OS=Cucumis melo OX=3656 GN=LOC103488119 PE=...	[more]
A0A0A0LPL8	3.0e-95	96.21	TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370460 ...	[more]
A0A6J1GK03	2.4e-92	92.89	uncharacterized protein LOC111454602 OS=Cucurbita moschata OX=3662 GN=LOC1114546...	[more]
A0A6J1KRQ5	3.1e-92	92.42	uncharacterized protein LOC111496615 OS=Cucurbita maxima OX=3661 GN=LOC111496615...	[more]

BLAST of Lsi08G010190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884950.1	3.9e-97	97.63	uncharacterized protein LOC120075535 [Benincasa hispida]	[more]
XP_008444918.1	1.3e-95	96.21	PREDICTED: uncharacterized protein LOC103488119 [Cucumis melo] >KAA0065098.1 TPR...	[more]
XP_004152601.1	6.3e-95	96.21	uncharacterized protein LOC101214199 [Cucumis sativus] >KGN62747.1 hypothetical ...	[more]
XP_023537835.1	1.7e-92	93.36	uncharacterized protein LOC111798743 [Cucurbita pepo subsp. pepo]	[more]
XP_022951869.1	5.0e-92	92.89	uncharacterized protein LOC111454602 [Cucurbita moschata] >KAG6585344.1 hypothet...	[more]

BLAST of Lsi08G010190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65520.1	1.7e-34	43.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 121..211 e-value: 3.1E-8 score: 35.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 46..120 e-value: 4.3E-5 score: 25.2
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 71..200
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 4..208
None	No IPR available	PANTHER	PTHR26312:SF163	SUBFAMILY NOT NAMED	coord: 4..208
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 165..198 score: 8.8799

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G010190.1	Lsi08G010190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity