Lsi08G009880 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTCAGGTAGGTAGCTTTATATTGACATTGAAAAGTCATATATTGTGGTAATTAAAAAGGGTTGGTTTCTTCTGTAGCATTTACAATTCTCCAATCATAATAATAATAACAATCCATTTCCTCCAAATTTCCTTTAGAAAATGTGGATTTTTTCAATTTCTTCCTCTTCTTCAACCTACCTTCGTTCCACCATCCAATCCCACCGCCACCGCCACCACCTTCGTCACCGCCATGGATCAAACCTTAACACAACTCCGAGAAGGTTGCCTTTCCCAACTACCAAAAATGCCGAAAACTCAACTTTCCATATTATCACAACTTGCAGAGATAATATGGCCATTTACAGCGGCGAAGCCGATGGACTTCCACCTTTTCCTCCTCTCCCTGACACTCCTTTGTAATTTCACTTTTCTTATATTTTATGTTTTTTAGTTGATTAGTGATTTAATAAGTCTCGTATTAAATCGATTTGCTTTAATATTTGAGATTGGATTTGAATTGCAGGCCATTATGGATAGCTGGGGTGCTATTGTCTGCAATTCTATCAATTTGGAAGACCCAGAACTATTGGGCGCCTTTTCTTATGTTAAAGGGTAAGGAGTATAAATCGGAAATATAATCTTTTTTATTTTTTATTTTTTAAAATTAAACTTATTTTCTCTATTTCTTTACCAGAATTTACATCTTCCTTAACTATATATATTTTTTTTTTTTTTTTTTAGTTTTCAAATTTCCATTTAGTTTTTGAAAATATTGGTACAAATTAAGCAAAAATTTTAGATGTGGAAAAAATGTATATAAGTTTAAATCTAAAAAAATAAAAAACCAAATGATTACCAAATCGGGTTTTAACTTTTGTTTTTTATTTTTGAAAATTAAGTTTATTTCCTTTCAATTTCTTATAATGATTTGCATTTTTCTTAAGTAAAAATGTTGAATTCTTAGCCAAATTCCAAAAATAAAAACAAATTTTTAAAAACTACCGCTACATTTGGTAACCATTTTATTTTTTCGTTTTTTATTTTAAAAAATTAAGCTTATAAACCCTTCTTCCATCTCTAAATTTCTAAATTTATTATCTACTTTTTACTTATATTTTCAAAAACCAAGCCAAAATTTGAAAACTAGAAAAAGTAGGAAAATTACTATAAACAGAAAAAATATCAAATCATTTACAAATATAGAAAATTTTTACTTTCTATCAGTGATAGATCGTGATAGAATTCTATCGCTTTCTATCGCGGTCTATCACTGATAGACTGTAAAAAAATTTATATATTTATAAATAGTTTGACTTATTTTTTTATATATGAAAAGAACCCAAAAAAAGTAGGTTTTAAAAATTTGTTTTTATTTTTACAATTTGGTCTAGAATTCAACTCTTTTCAACATTATAAAAAAAATGTGAGAAAATAGACTTAATTTTTAAAAACAAAAAACAAAAAAGGAAATGATTACGACGAAAACTAATAAATTTGATTCGATTTATTTATTTATTTCTATAAATTAAACTGAGAGATATATATAATCTGGGGTTGGTTTACGTTAAGTGAATATGATGATTTTGTATAGAGAAAGTGGATCAAGTGGTGGATGTGGTGGAAGATGTGGCGGAAATGGTGGAGACGGCGGCGGAGACAGTGGATAAGGTGGCGGAAGAGATTGCAGAACATCTCCCGGAAGGCAGCAAACTCCAACAGGCTGCATTATTCGTCGAAAAATCAGCGGAAAGGATTGCTAAGGATGCTGATTTTGCAGGAGATATTATTGACAAGGTTAGCCCTTTTCTCCAAATTCTAAACTTTACCCCATCAATTCATCTTTATTTTTTTTCTTTATTTCTATGTCCATATAGTTCAACGTCAAATATGAATTGGCATTTCTCTTCTATTCAATTAAGGGCGCATGAAATGTAACATAATTTAAATTGATATCTAAGTTTGACTCAATAATAAACCAATAGAAATTTTTTCTTTTCTCTTCTTTTAAAAAAAAGTAAAAATATTTATTTGTTAATTAATTCATAATTTTCTACTTATCAATAACATTTCTATCAACATCCATATTTAGAACCTACTTTTTTTTAAAAGTTGCAATATTACCAACTCTTAGAGTAAAACTACCGTACGAAAATCGAGATCTAAAAAAGTGAAAGTAAAAGTTACCACAAATTTTAGGTCACAATCACACCTATTCTAGATCCTAATTAATTTTTTAAAATTTTAATGAGTTCTTAATTCAATGATAGTTTATTCTAGTTTTCAGAAATAAAAATAATATATATTTAACTAAGTGAAAACGTTCATAAATAATAAGTATATTTTTCCTTTTAATTTAGCATTAAAAAATATTACCTTTTTCTATGCTTGTAGAACATCTTTCTCTTTAAAAGAACTCGAGCACACCTCAACCAACTTGGTATTGAATTATTTAATTATTTGATTTGTTTTAAATATATCTTTCTTATTTAAAAAATTATTAAAATATTACCATTTACTTTTCATAACCATTATAATATTATAGGAGCAGTAATTTAAAAATAAAAATTTAGATCACACACTATTCTAATTCAATGCCACACCATTTTAAGTCTCAATTTTTTTTACTGTAAATTTTAAAGAATTTATACTCTATGAATAATTTTGAAATGTTTATGAAAAGATTGAGGTAATATTGTAATTTCATAAATTAAACAAATAATAATTTATGAAATTATTATTATAGTAGTTGCTAAAAAATAATAATAATAAATTTTTTCATAAATTATGTTGAATTTATTTATGTTTATTTGGTTTATTATAGTAGTTTGAAATAATAATAATAATAATAATAATAATAATAATATATTTTTCATAAATTACAATAATAATAATATTGTAATTTAATAAGACCATGAATTAAATAAATAATAATTTCATAGCCTTACAATTGTAGTAGTTGCTCTCCTATTAGTAGAAATTAGTTGGTTGATTAAATGTTATGGATGAGACTGAAAAAAGGGGCAATAATAGTGTTTTGAGTACAATTATAATAAGAGTAGGAGGACTCAATAATAAATTTATATGTTGCTAACATATCTGTTTGTTGAACTAGCAAAATAATAATAGTAATAATAATAATTAAAAAAAAAAAAAGTGTTTTACTGTGTATGGTGGGGGGTTTGATTAATTTGTATGGCTATTATCAATTGCGTTTGTCTGCTCCCATTTCCCATCAATTTAAACCACCGTACCTTTGGTCGGAAAAATTTGAAGTTTCAATTACTAAATTTCATATTCTTTAACAATGCATGATATTTTAATATATTATTACTTTTATCCACGTTTTTTTTTATGAGGACTCCCTACCTAACCAATTGACGTAATCGACCCTTCTCTTTTGAGAAATCTAGTTTGGCCTATTTTCAAAATCTTCCAATTCTGTCCTTTTCACTTTACAATTCATTACGTTTTTTTTTTCCTCTCTCTCTTTGTTCGAACATGAGTTTTATCTCAAAACTAATTTGACAATAAAAAAAAAATAATCAATGCATCGAACTCTCCTTTTTTTTTTTTTAATGTTAAATTCTCGACATGCCCCTCAAGATGACGTGTTTTTATATCTGTGAGTGTGATAGCCAACTTACACACACCTTAACTAATCTCATGGAACAACCTATGTGACCCTATAATATTTGGGTGTTATGCCCCTTAAGATGACATAAATTTTGAATTGACCATTTTTGGATTAAGCTGTGACACCATCTAGATAATATTTAGTTTCATCTCAAAACTAAATTGTCAATGAGATAAGTAAACTATGACACCTTATTAAGAGTATGAATTCTTTAATTTTTTTTATGTCAGATGCCTCTTCAAGATGGTGCCTCTTGGGTACCATTCTAGGTCTGATCTCTTTTTCTTTTTTTAGACCAAATATATCTGTTTAAGTTTCATAGACTTTGATATCATATTAGATAAACATGATATTTCATCTCAAAACTAATTAGCAATGAGTGTCCTATCTATTTTATCAAGATTGGAAAGTGATTTCTCCATCTTTTTAATGTGGAGCCACCATTTAGTTTTAAGATAGAAATTCTGAGATCATCTAACAACCTTTAATTTAATCAATAAATAATATTATTTAATTTTATTAATGGAGACTTTTTGTTTTTCTAATATGATTTATTATGAATATAAACCTCAGATTGAGGAAGCAGAAGACGAGTTGAGTACATTTATTAAGCAAAATGGAGAAAGTAAAGAAGAAGACGACGCAAAGCAAGAGAATGATCAAACTGAAGCCCGCGTCGAGGAACAAAGCAAGAAGGCAACCTCTTAATTAAATGATATAAAATATAGGGTTGAACTTGAATTATATAATGATGTATCAATTCATTTGGAACATACATTCATTTGTGTGCATAATAACTTTAATGGAGCCTACTTGCCAATCTTAACGATAAATTCCTAGATGAACCGCACCTATTGCCACTCTGAAGGGTCCTAGACCCCATAATTCAAAACTTACGTTTAGATTGAACATTTTGGGTCTGATTTGTAATATTAAACTCATTCCATTCAAACAGTTTTTAACTAAATTCTTTCACGCATTCC GTCAGGTAGGTAGCTTTATATTGACATTGAAAAGTCATATATTGTGGTAATTAAAAAGGGTTGGTTTCTTCTGTAGCATTTACAATTCTCCAATCATAATAATAATAACAATCCATTTCCTCCAAATTTCCTTTAGAAAATGTGGATTTTTTCAATTTCTTCCTCTTCTTCAACCTACCTTCGTTCCACCATCCAATCCCACCGCCACCGCCACCACCTTCGTCACCGCCATGGATCAAACCTTAACACAACTCCGAGAAGGTTGCCTTTCCCAACTACCAAAAATGCCGAAAACTCAACTTTCCATATTATCACAACTTGCAGAGATAATATGGCCATTTACAGCGGCGAAGCCGATGGACTTCCACCTTTTCCTCCTCTCCCTGACACTCCTTTGCCATTATGGATAGCTGGGGTGCTATTGTCTGCAATTCTATCAATTTGGAAGACCCAGAACTATTGGGCGCCTTTTCTTATGTTAAAGGAGAAAGTGGATCAAGTGGTGGATGTGGTGGAAGATGTGGCGGAAATGGTGGAGACGGCGGCGGAGACAGTGGATAAGGTGGCGGAAGAGATTGCAGAACATCTCCCGGAAGGCAGCAAACTCCAACAGGCTGCATTATTCGTCGAAAAATCAGCGGAAAGGATTGCTAAGGATGCTGATTTTGCAGGAGATATTATTGACAAGATTGAGGAAGCAGAAGACGAGTTGAGTACATTTATTAAGCAAAATGGAGAAAGTAAAGAAGAAGACGACGCAAAGCAAGAGAATGATCAAACTGAAGCCCGCGTCGAGGAACAAAGCAAGAAGGCAACCTCTTAATTAAATGATATAAAATATAGGGTTGAACTTGAATTATATAATGATGTATCAATTCATTTGGAACATACATTCATTTGTGTGCATAATAACTTTAATGGAGCCTACTTGCCAATCTTAACGATAAATTCCTAGATGAACCGCACCTATTGCCACTCTGAAGGGTCCTAGACCCCATAATTCAAAACTTACGTTTAGATTGAACATTTTGGGTCTGATTTGTAATATTAAACTCATTCCATTCAAACAGTTTTTAACTAAATTCTTTCACGCATTCC ATGTGGATTTTTTCAATTTCTTCCTCTTCTTCAACCTACCTTCGTTCCACCATCCAATCCCACCGCCACCGCCACCACCTTCGTCACCGCCATGGATCAAACCTTAACACAACTCCGAGAAGGTTGCCTTTCCCAACTACCAAAAATGCCGAAAACTCAACTTTCCATATTATCACAACTTGCAGAGATAATATGGCCATTTACAGCGGCGAAGCCGATGGACTTCCACCTTTTCCTCCTCTCCCTGACACTCCTTTGCCATTATGGATAGCTGGGGTGCTATTGTCTGCAATTCTATCAATTTGGAAGACCCAGAACTATTGGGCGCCTTTTCTTATGTTAAAGGAGAAAGTGGATCAAGTGGTGGATGTGGTGGAAGATGTGGCGGAAATGGTGGAGACGGCGGCGGAGACAGTGGATAAGGTGGCGGAAGAGATTGCAGAACATCTCCCGGAAGGCAGCAAACTCCAACAGGCTGCATTATTCGTCGAAAAATCAGCGGAAAGGATTGCTAAGGATGCTGATTTTGCAGGAGATATTATTGACAAGATTGAGGAAGCAGAAGACGAGTTGAGTACATTTATTAAGCAAAATGGAGAAAGTAAAGAAGAAGACGACGCAAAGCAAGAGAATGATCAAACTGAAGCCCGCGTCGAGGAACAAAGCAAGAAGGCAACCTCTTAA MWIFSISSSSSTYLRSTIQSHRHRHHLRHRHGSNLNTTPRRLPFPTTKNAENSTFHIITTCRDNMAIYSGEADGLPPFPPLPDTPLPLWIAGVLLSAILSIWKTQNYWAPFLMLKEKVDQVVDVVEDVAEMVETAAETVDKVAEEIAEHLPEGSKLQQAALFVEKSAERIAKDADFAGDIIDKIEEAEDELSTFIKQNGESKEEDDAKQENDQTEARVEEQSKKATS Homology
BLAST of Lsi08G009880 vs. ExPASy TrEMBL
Match: A0A5A7VBX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004630 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41 Identity = 105/190 (55.26%), Postives = 131/190 (68.95%), Query Frame = 0
BLAST of Lsi08G009880 vs. ExPASy TrEMBL
Match: A0A1S3BDR2 (uncharacterized protein LOC103488552 OS=Cucumis melo OX=3656 GN=LOC103488552 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41 Identity = 105/190 (55.26%), Postives = 131/190 (68.95%), Query Frame = 0
BLAST of Lsi08G009880 vs. ExPASy TrEMBL
Match: A0A6J1K717 (uncharacterized protein LOC111492223 OS=Cucurbita maxima OX=3661 GN=LOC111492223 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40 Identity = 117/217 (53.92%), Postives = 146/217 (67.28%), Query Frame = 0
BLAST of Lsi08G009880 vs. ExPASy TrEMBL
Match: A0A6J1HCK6 (uncharacterized protein LOC111462754 OS=Cucurbita moschata OX=3662 GN=LOC111462754 PE=4 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 5.1e-40 Identity = 115/214 (53.74%), Postives = 142/214 (66.36%), Query Frame = 0
BLAST of Lsi08G009880 vs. ExPASy TrEMBL
Match: A0A6J1BVN6 (uncharacterized protein LOC111005138 OS=Momordica charantia OX=3673 GN=LOC111005138 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 4.5e-36 Identity = 99/192 (51.56%), Postives = 133/192 (69.27%), Query Frame = 0
BLAST of Lsi08G009880 vs. NCBI nr
Match: XP_038886505.1 (uncharacterized protein LOC120076681 isoform X1 [Benincasa hispida]) HSP 1 Score: 279.3 bits (713), Expect = 3.0e-71 Identity = 170/231 (73.59%), Postives = 194/231 (83.98%), Query Frame = 0
BLAST of Lsi08G009880 vs. NCBI nr
Match: XP_038886507.1 (uncharacterized protein LOC120076681 isoform X3 [Benincasa hispida] >XP_038886572.1 uncharacterized protein LOC120076742 isoform X2 [Benincasa hispida]) HSP 1 Score: 235.3 bits (599), Expect = 5.0e-58 Identity = 139/188 (73.94%), Postives = 155/188 (82.45%), Query Frame = 0
BLAST of Lsi08G009880 vs. NCBI nr
Match: XP_038886506.1 (uncharacterized protein LOC120076681 isoform X2 [Benincasa hispida] >XP_038886571.1 uncharacterized protein LOC120076742 isoform X1 [Benincasa hispida]) HSP 1 Score: 234.2 bits (596), Expect = 1.1e-57 Identity = 141/196 (71.94%), Postives = 157/196 (80.10%), Query Frame = 0
BLAST of Lsi08G009880 vs. NCBI nr
Match: XP_011649672.1 (uncharacterized protein LOC105434653 isoform X2 [Cucumis sativus] >KAE8652133.1 hypothetical protein Csa_022545 [Cucumis sativus]) HSP 1 Score: 202.6 bits (514), Expect = 3.6e-48 Identity = 124/218 (56.88%), Postives = 152/218 (69.72%), Query Frame = 0
BLAST of Lsi08G009880 vs. NCBI nr
Match: XP_011649671.1 (uncharacterized protein LOC105434653 isoform X1 [Cucumis sativus]) HSP 1 Score: 197.6 bits (501), Expect = 1.2e-46 Identity = 124/220 (56.36%), Postives = 152/220 (69.09%), Query Frame = 0
BLAST of Lsi08G009880 vs. TAIR 10
Match: AT2G14095.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 106 Blast hits to 103 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 4; Plants - 87; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09 Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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