Lsi08G008420 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G008420
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPHD finger protein ALFIN-LIKE 4-like
Locationchr08: 16868547 .. 16871158 (+)
RNA-Seq ExpressionLsi08G008420
SyntenyLsi08G008420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCAACCATAAAAAGAAATATGGGAGAAGAATAACAAACTTTGATCGTGGCCAACACCATGCGTTAAAGCATCTGAGAATGTAAAGATGGCCGATTTTACTTTCTTTTGCCTATTCAATGTTGAGTCATTTGGAAGCATGTTTAGTTGATTCTTGATTCTTTTGTGATAAGGCATGCATCATTAGGTACATATACAATATCCATAGTAAATTAACCTCCTGCATTCTATATTTGATTTCCTTTTTTAAAAAAATTTAAAAATTCATCACTTCTTTTATGTTGTTTTCTAAATGAAAATACCATAAATTGTTAAATGTACGAGACGTTCCAATATATTTTAGGTTAAACTACAAGCTTGGTCCCTTAACTTTGTTTGTGTAAGGTGTCTAATAAGTCCATGAACTTTCAGTTGTGTCTAATAAATCCCTAAGCTTTCATTTTTGTGCTTGTAGGTCTTTAGCCTATTTGAAACTTTTAAAAATTTATGAACTTCTAAGACTCAAAGTTGAAAGTTTTGGGCCCGATCAGATAGAAAATTCAATTGTATATATAATTAATCAATTAATTTCAAATAGTGTTGAATATGTTAGCGATCGATTAGACACAAAATTAGAAGTTCAAGATTTATTATATACTTTGAAAGTTTAGGAACCTATTAGACTCAAAATTGAAAACTCAGGATCTATTATACACTTTTTAAAGTTTAGGGACCTATTTGACACAAACATGACAGTTCAGAGACTAAATTTGTCACTTAACCTACATTTTTTGCTTGTAAATTTTAGTAAGCATGCCCTTGCCATGCTCATGGCCTGATTTATAGAAAATGGTGTGCACAGTGTCTATGACATGCTGTGGCTTCATAGGCTTTATCTTCCTAATATATATGCTGCGTTTTCCAAAGGAGTTGCAATTTTCTTTCGAATAGGATACTGATTCTATTTCAATGTTTCTGGATCTTTTTTCTTTGTATGAGTAATGTTTCTTTTGATATTTTATTTCACACAACACAAAGTTTACTTCCAGAGAAATTTAAGTTATCCCTTGATAGATTTAATGCTTCTATTTGGATGTCAGTGTTCAAGGACTTTTACTTCGTCGAACCACTTTTTTGTATGGTTACTTTGTTTTTCCTTTTGTATTCTTTCATTTATCTCAATGTAAGCTTGATTTTAACCAACTGTATGTTTGGGGGTCAGTGAATAAGTAATGAACTTTGAGGAATTTGAGTTCAAATTATAATGGTCACCTACCTAGGATTTCCTTGACAATCAAATGTATTAGAGTTAGGTGGTTGTCTCATGAGAATAGCTGAGGTGTAGATAAGTTACTTTGGACATTCAAATATAAATGAAAAAAAAGTTTGGTTTTCCATCTCTATATATAAGCTACTTTGGTGTACTGCAAATTCTGGGCATCTGCCGTCCTCTCTGACTTAATTTTATGCTTGAACTGGACTATTTGATAACTAAGAGGGCTGTAGGCTTGTAGCAGTGACTCAATTTAGTATATTAACACCAATAGTTATAGTTTTCTCCTTTTATTTTATTTTTAGGACAAGATACAATAACCTCTCTCTTAAATGCATAAACGGGACTTGAGCTTTGAGGAGGATGATTAATTTACTGCATGCTTCATTACTATGACTATGAGCGAGAACCTAAGAATTGCTTTCTTTGTTTTGTTTCAGATAGAATACTGAATGTGTAGGATAGTGAGCACATACATACGTTGCATAGTTTATGTTTCTTCATTACAACAGGGACCATGACCGAGTCTTTTTATTTTAGTTTGGCTCCTTTTTGGGCGGTCTTTTTGTTGGTCTCGGTTGTGGGTCTTCTCTTGATTTTCTTGTATTCTCTCATTTTTATCTCCGTGATAGTTTTGTTTCTTGATGAAGGTTCCATGATTGGGAACTCAAGTTTCTGTTGCTTTTGTTGCAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGGTTTGAAAGAATTTTTTTATCCTGCTTTCTCCCTTTTTTTAGTTTTCTAGCCAATTCGGCTTAAACTGGTTATATACACAAAACTACTGGTGATTTTTTTAATTTCTCTAATGGTTTGGCTGAGGAGCCTGTAGAAAACCTGTCACCCTGCGTACTAAACTCAAGTATTATTTGACTACTGGTTCTTTTTGCTTAATATTTGATTTGATTCATGCTGGAGGCAACTCATTAAGCATATTATTTGACATATGTTTGCAATATACAGCGGAGTTCTGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCAAAGGACGAGGACGAGGAAGGCTTGGAAGAAGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAATTCTGGATTTGCTGTGATATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA

mRNA sequence

AATCAACCATAAAAAGAAATATGGGAGAAGAATAACAAACTTTGATCGTGGCCAACACCATGCGTTAAAGCATCTGAGAATGTAAAGATGGCCGATTTTACTTTCTTTTGCCTATTCAATGTTGAGTCATTTGGAAGCATGTTTAGTTGATTCTTGATTCTTTTGTGATAAGGCATGCATCATTAGGTACATATACAATATCCATAGTAAATTAACCTCCTGCATTCTATATTTGATTTCCTTTTTTAAAAAAATTTAAAAATTCATCACTTCTTTTATGTTGTTTTCTAAATGAAAATACCATAAATTGTTAAATGTACGAGACGTTCCAATATATTTTAGGTTAAACTACAAGCTTGGTCCCTTAACTTTGTTTGTGTAAGGTGTCTAATAAGTCCATGAACTTTCAGTTGTGTCTAATAAATCCCTAAGCTTTCATTTTTGTGCTTGTAGGTCTTTAGCCTATTTGAAACTTTTAAAAATTTATGAACTTCTAAGACTCAAAGTTGAAAGTTTTGGGCCCGATCAGATAGAAAATTCAATTGTATATATAATTAATCAATTAATTTCAAATAGTGTTGAATATGTTAGCGATCGATTAGACACAAAATTAGAAGTTCAAGATTTATTATATACTTTGAAAGTTTAGGAACCTATTAGACTCAAAATTGAAAACTCAGGATCTATTATACACTTTTTAAAGTTTAGGGACCTATTTGACACAAACATGACAGTTCAGAGACTAAATTTGTCACTTAACCTACATTTTTTGCTTGTAAATTTTAGTAAGCATGCCCTTGCCATGCTCATGGCCTGATTTATAGAAAATGGTGTGCACAGTGTCTATGACATGCTGTGGCTTCATAGGCTTTATCTTCCTAATATATATGCTGCGTTTTCCAAAGGAGTTGCAATTTTCTTTCGAATAGGATACTGATTCTATTTCAATGTTTCTGGATCTTTTTTCTTTGTATGAGTAATGTTTCTTTTGATATTTTATTTCACACAACACAAAGTTTACTTCCAGAGAAATTTAAGTTATCCCTTGATAGATTTAATGCTTCTATTTGGATGTCAGTGTTCAAGGACTTTTACTTCGTCGAACCACTTTTTTGTATGGTTACTTTGTTTTTCCTTTTGTATTCTTTCATTTATCTCAATGTAAGCTTGATTTTAACCAACTGTATGTTTGGGGGTCAGTGAATAAGTAATGAACTTTGAGGAATTTGAGTTCAAATTATAATGGTCACCTACCTAGGATTTCCTTGACAATCAAATGTATTAGAGTTAGGTGGTTGTCTCATGAGAATAGCTGAGGTGTAGATAAGTTACTTTGGACATTCAAATATAAATGAAAAAAAAGTTTGGTTTTCCATCTCTATATATAAGCTACTTTGGTGTACTGCAAATTCTGGGCATCTGCCGTCCTCTCTGACTTAATTTTATGCTTGAACTGGACTATTTGATAACTAAGAGGGCTGTAGGCTTGTAGCAGTGACTCAATTTAGTATATTAACACCAATAGTTATAGTTTTCTCCTTTTATTTTATTTTTAGGACAAGATACAATAACCTCTCTCTTAAATGCATAAACGGGACTTGAGCTTTGAGGAGGATGATTAATTTACTGCATGCTTCATTACTATGACTATGAGCGAGAACCTAAGAATTGCTTTCTTTGTTTTGTTTCAGATAGAATACTGAATGTGTAGGATAGTGAGCACATACATACGTTGCATAGTTTATGTTTCTTCATTACAACAGGGACCATGACCGAGTCTTTTTATTTTAGTTTGGCTCCTTTTTGGGCGGTCTTTTTGTTGGTCTCGGTTGTGGGTCTTCTCTTGATTTTCTTGTATTCTCTCATTTTTATCTCCGTGATAGTTTTGTTTCTTGATGAAGGTTCCATGATTGGGAACTCAAGTTTCTGTTGCTTTTGTTGCAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCAAAGGACGAGGACGAGGAAGGCTTGGAAGAAGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAATTCTGGATTTGCTGTGATATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA

Coding sequence (CDS)

ATGACCGAGTCTTTTTATTTTAGTTTGGCTCCTTTTTGGGCGGTCTTTTTGTTGGTCTCGGTTGTGGGTCTTCTCTTGATTTTCTTGTATTCTCTCATTTTTATCTCCGTGATAGTTTTGTTTCTTGATGAAGGTTCCATGATTGGGAACTCAAGTTTCTGTTGCTTTTGTTGCAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCAAAGGACGAGGACGAGGAAGGCTTGGAAGAAGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAATTCTGGATTTGCTGTGATATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA

Protein sequence

MTESFYFSLAPFWAVFLLVSVVGLLLIFLYSLIFISVIVLFLDEGSMIGNSSFCCFCCRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP
Homology
[Close]
BLAST of Lsi08G008420 vs. ExPASy Swiss-Prot
Match: O81488 (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2)

HSP 1 Score: 209.1 bits (531), Expect = 4.3e-53
Identity = 105/135 (77.78%), Postives = 117/135 (86.67%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNM+NDLPTIFEVV GTAKKQ KDKSSVSN+SSN+SKS+ KR SE + K +K    
Sbjct: 120 RKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPK 179

Query: 119 KD--EDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEH 178
            D  E+EEG+EEEDE+E GET CGACGE+YA+DEFWICCD+CE WFHGKCVKITPARAEH
Sbjct: 180 DDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEH 239

Query: 179 IKQYKCPSCSNKRIR 192
           IKQYKCPSCSNKR R
Sbjct: 240 IKQYKCPSCSNKRAR 254

[Close]
BLAST of Lsi08G008420 vs. ExPASy Swiss-Prot
Match: Q9M2B4 (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-47
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPK-RSSEPQIKNTKAVQ 118
           RKRLFNMIND+PTIFEVVTG AK   KDKSS +N + NKSKSN K R+SE   K++K  Q
Sbjct: 121 RKRLFNMINDVPTIFEVVTGMAK--AKDKSSAANQNGNKSKSNSKVRTSEG--KSSKTKQ 180

Query: 119 SKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHI 178
            K+EDEE ++E+DE++HGETLCGACG++  +DEFWICCD+CEKWFHGKCVKITPARAEHI
Sbjct: 181 PKEEDEE-IDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARAEHI 240

Query: 179 KQYKCPSCSNKRIR 192
           KQYKCPSCSNKR R
Sbjct: 241 KQYKCPSCSNKRAR 249

[Close]
BLAST of Lsi08G008420 vs. ExPASy Swiss-Prot
Match: Q5XEM9 (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-46
Identity = 92/141 (65.25%), Postives = 114/141 (80.85%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLF+MIN++PT++EVVTG A+KQ K+  S +N + N+SKSN K     + K++K + +
Sbjct: 121 RKRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNRSKSNSKMRG-LESKSSKTIHA 180

Query: 119 KDEDE-------EGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITP 178
           KDE+E       E  E+EDE+EHGETLCGACG+NYASDEFWICCD+CEKWFHG+CVKITP
Sbjct: 181 KDEEEGLELEEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECVKITP 240

Query: 179 ARAEHIKQYKCPSCSNKRIRP 193
           ARAEHIK YKCP+CSNKR RP
Sbjct: 241 ARAEHIKHYKCPTCSNKRARP 260

[Close]
BLAST of Lsi08G008420 vs. ExPASy Swiss-Prot
Match: B8BJV8 (PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35671 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.8e-43
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLF+MIN+LPTI+EVVTGTAKKQ K+K+  ++  SNKS + P R  EP  +  K    
Sbjct: 118 RKRLFSMINNLPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKMPPP 177

Query: 119 KDEDEEGLEEEDEEE-HGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHI 178
           KDED+ G EEE+EEE H  TLCGACG+NY  DEFWICCD CE WFHGKCVKITPA+AEHI
Sbjct: 178 KDEDDSGGEEEEEEEDHENTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHI 237

Query: 179 KQYKCPSCSNKRIR 192
           K YKCP+CS+   R
Sbjct: 238 KHYKCPNCSSSSKR 251

[Close]
BLAST of Lsi08G008420 vs. ExPASy Swiss-Prot
Match: Q2R837 (PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0244800 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.8e-43
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLF+MIN+LPTI+EVVTGTAKKQ K+K+  ++  SNKS + P R  EP  +  K    
Sbjct: 118 RKRLFSMINNLPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKMPPP 177

Query: 119 KDEDEEGLEEEDEEE-HGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHI 178
           KDED+ G EEE+EEE H  TLCGACG+NY  DEFWICCD CE WFHGKCVKITPA+AEHI
Sbjct: 178 KDEDDSGGEEEEEEEDHENTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHI 237

Query: 179 KQYKCPSCSNKRIR 192
           K YKCP+CS+   R
Sbjct: 238 KHYKCPNCSSSSKR 251

[Close]
BLAST of Lsi08G008420 vs. ExPASy TrEMBL
Match: A0A6J1K4G7 (PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492205 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 9.9e-69
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIK+TKAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSTKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKRIRP
Sbjct: 240 QYKCPSCSNKRIRP 253

[Close]
BLAST of Lsi08G008420 vs. ExPASy TrEMBL
Match: A0A6J1KJW0 (PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496393 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.2e-68
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIK+TKAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSTKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGL+EEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKRIRP
Sbjct: 240 QYKCPSCSNKRIRP 253

[Close]
BLAST of Lsi08G008420 vs. ExPASy TrEMBL
Match: A0A6J1BRB4 (PHD finger protein ALFIN-LIKE 4-like OS=Momordica charantia OX=3673 GN=LOC111004878 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.9e-68
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQ+KN KAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQVKNAKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKR+RP
Sbjct: 240 QYKCPSCSNKRMRP 253

[Close]
BLAST of Lsi08G008420 vs. ExPASy TrEMBL
Match: A0A6J1GJ74 (PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454350 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.9e-68
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIK TKAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTTKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGL+EEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKRIRP
Sbjct: 240 QYKCPSCSNKRIRP 253

[Close]
BLAST of Lsi08G008420 vs. ExPASy TrEMBL
Match: A0A6J1HE48 (PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462656 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.8e-68
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIK+ KAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSAKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKRIRP
Sbjct: 240 QYKCPSCSNKRIRP 253

[Close]
BLAST of Lsi08G008420 vs. NCBI nr
Match: XP_022997242.1 (PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-68
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIK+TKAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSTKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKRIRP
Sbjct: 240 QYKCPSCSNKRIRP 253

[Close]
BLAST of Lsi08G008420 vs. NCBI nr
Match: XP_023002572.1 (PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 4.5e-68
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIK+TKAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSTKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGL+EEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKRIRP
Sbjct: 240 QYKCPSCSNKRIRP 253

[Close]
BLAST of Lsi08G008420 vs. NCBI nr
Match: XP_022131809.1 (PHD finger protein ALFIN-LIKE 4-like [Momordica charantia])

HSP 1 Score: 268.1 bits (684), Expect = 5.9e-68
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQ+KN KAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQVKNAKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKR+RP
Sbjct: 240 QYKCPSCSNKRMRP 253

[Close]
BLAST of Lsi08G008420 vs. NCBI nr
Match: XP_022951575.1 (PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita moschata] >KAG7020671.1 PHD finger protein ALFIN-LIKE 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 5.9e-68
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIK TKAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTTKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGL+EEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKRIRP
Sbjct: 240 QYKCPSCSNKRIRP 253

[Close]
BLAST of Lsi08G008420 vs. NCBI nr
Match: XP_022962095.1 (PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita moschata] >XP_023546198.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7029537.1 PHD finger protein ALFIN-LIKE 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267.7 bits (683), Expect = 7.8e-68
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIK+ KAVQS
Sbjct: 120 RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSAKAVQS 179

Query: 119 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 178
           KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK
Sbjct: 180 KDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIK 239

Query: 179 QYKCPSCSNKRIRP 193
           QYKCPSCSNKRIRP
Sbjct: 240 QYKCPSCSNKRIRP 253

[Close]
BLAST of Lsi08G008420 vs. TAIR 10
Match: AT5G26210.1 (alfin-like 4 )

HSP 1 Score: 209.1 bits (531), Expect = 3.0e-54
Identity = 105/135 (77.78%), Postives = 117/135 (86.67%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLFNM+NDLPTIFEVV GTAKKQ KDKSSVSN+SSN+SKS+ KR SE + K +K    
Sbjct: 120 RKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPK 179

Query: 119 KD--EDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEH 178
            D  E+EEG+EEEDE+E GET CGACGE+YA+DEFWICCD+CE WFHGKCVKITPARAEH
Sbjct: 180 DDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEH 239

Query: 179 IKQYKCPSCSNKRIR 192
           IKQYKCPSCSNKR R
Sbjct: 240 IKQYKCPSCSNKRAR 254

[Close]
BLAST of Lsi08G008420 vs. TAIR 10
Match: AT3G42790.1 (alfin-like 3 )

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-48
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPK-RSSEPQIKNTKAVQ 118
           RKRLFNMIND+PTIFEVVTG AK   KDKSS +N + NKSKSN K R+SE   K++K  Q
Sbjct: 121 RKRLFNMINDVPTIFEVVTGMAK--AKDKSSAANQNGNKSKSNSKVRTSEG--KSSKTKQ 180

Query: 119 SKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHI 178
            K+EDEE ++E+DE++HGETLCGACG++  +DEFWICCD+CEKWFHGKCVKITPARAEHI
Sbjct: 181 PKEEDEE-IDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARAEHI 240

Query: 179 KQYKCPSCSNKRIR 192
           KQYKCPSCSNKR R
Sbjct: 241 KQYKCPSCSNKRAR 249

[Close]
BLAST of Lsi08G008420 vs. TAIR 10
Match: AT5G20510.1 (alfin-like 5 )

HSP 1 Score: 188.0 bits (476), Expect = 7.3e-48
Identity = 92/141 (65.25%), Postives = 114/141 (80.85%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQS 118
           RKRLF+MIN++PT++EVVTG A+KQ K+  S +N + N+SKSN K     + K++K + +
Sbjct: 121 RKRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNRSKSNSKMRG-LESKSSKTIHA 180

Query: 119 KDEDE-------EGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITP 178
           KDE+E       E  E+EDE+EHGETLCGACG+NYASDEFWICCD+CEKWFHG+CVKITP
Sbjct: 181 KDEEEGLELEEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECVKITP 240

Query: 179 ARAEHIKQYKCPSCSNKRIRP 193
           ARAEHIK YKCP+CSNKR RP
Sbjct: 241 ARAEHIKHYKCPTCSNKRARP 260

[Close]
BLAST of Lsi08G008420 vs. TAIR 10
Match: AT2G02470.1 (alfin-like 6 )

HSP 1 Score: 159.5 bits (402), Expect = 2.8e-39
Identity = 87/138 (63.04%), Postives = 100/138 (72.46%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTK--AV 118
           RKRLF MIN+LPTIFEVV+G A KQ KD S  +N+S +K      R SE   K  K  + 
Sbjct: 120 RKRLFQMINELPTIFEVVSGNA-KQSKDLSVNNNNSKSKPSGVKSRQSESLSKVAKMSSP 179

Query: 119 QSKDEDEEGLEEEDEEEHGE--TLCGACGENYASDEFWICCDICEKWFHGKCVKITPARA 178
             K+E+EE  E EDE E  E   +CGACG+NY +DEFWICCD CEKWFHGKCVKITPA+A
Sbjct: 180 PPKEEEEEEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAKA 239

Query: 179 EHIKQYKCPSCSNKRIRP 193
           EHIK YKCP+CSNKR RP
Sbjct: 240 EHIKHYKCPTCSNKRARP 256

[Close]
BLAST of Lsi08G008420 vs. TAIR 10
Match: AT1G14510.1 (alfin-like 7 )

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-38
Identity = 83/132 (62.88%), Postives = 97/132 (73.48%), Query Frame = 0 

Query: 59  RKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTK-AVQ 118
           RKRLF MINDLPTIFEVVTG A KQ KD+S+  N S +KS     R SE   K +K +  
Sbjct: 120 RKRLFQMINDLPTIFEVVTGNA-KQSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSPP 179

Query: 119 SKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHI 178
            + EDE G E+ED+E+    +CGACG+NY  DEFWICCD CEKWFHGKCVKITPA+AEHI
Sbjct: 180 PRKEDESGDEDEDDEQ--GAVCGACGDNYGGDEFWICCDACEKWFHGKCVKITPAKAEHI 239

Query: 179 KQYKCPSCSNKR 190
           K YKCPSC+  +
Sbjct: 240 KHYKCPSCTTSK 248

The following BLAST results are available for this feature:
BLAST of Lsi08G008420 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O814884.3e-5377.78PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2[more]
Q9M2B42.1e-4773.88PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1[more]
Q5XEM91.0e-4665.25PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1[more]
B8BJV81.8e-4365.67PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35... [more]
Q2R8371.8e-4365.67PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11... [more]
BLAST of Lsi08G008420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K4G79.9e-6999.25PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1KJW02.2e-6898.51PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1BRB42.9e-6897.76PHD finger protein ALFIN-LIKE 4-like OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6J1GJ742.9e-6898.51PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HE483.8e-6898.51PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of Lsi08G008420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022997242.12.0e-6899.25PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita maxima][more]
XP_023002572.14.5e-6898.51PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita maxima][more]
XP_022131809.15.9e-6897.76PHD finger protein ALFIN-LIKE 4-like [Momordica charantia][more]
XP_022951575.15.9e-6898.51PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita moschata] >KAG7020671... [more]
XP_022962095.17.8e-6898.51PHD finger protein ALFIN-LIKE 4-like isoform X1 [Cucurbita moschata] >XP_0235461... [more]
BLAST of Lsi08G008420 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G26210.13.0e-5477.78alfin-like 4 [more]
AT3G42790.11.5e-4873.88alfin-like 3 [more]
AT5G20510.17.3e-4865.25alfin-like 5 [more]
AT2G02470.12.8e-3963.04alfin-like 6 [more]
AT1G14510.12.3e-3862.88alfin-like 7 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 138..186
e-value: 2.1E-9
score: 47.2
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 139..187
e-value: 1.1E-10
score: 41.2
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 136..188
score: 9.5256
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 129..187
e-value: 2.0E-26
score: 93.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..113
NoneNo IPR availablePANTHERPTHR12321:SF141PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1coord: 57..192
IPR045104AlfinPANTHERPTHR12321CPG BINDING PROTEINcoord: 57..192
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 139..185
IPR044104Alfin1-like, PHD fingerCDDcd15613PHD_AL_plantcoord: 138..188
e-value: 7.30088E-29
score: 99.8773
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 128..189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G008420.1Lsi08G008420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0042393 histone binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000976 transcription cis-regulatory region binding
molecular_function GO:0003712 transcription coregulator activity