Lsi08G006970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G006970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	U11/U12 small nuclear ribonucleoprotein 31 kDa protein
Location	chr08: 15269829 .. 15271419 (-)
RNA-Seq Expression	Lsi08G006970
Synteny	Lsi08G006970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCACCAGCAGATTCGTCTTTGCCGGAGACTCACGGTGAAAAAATGGCGCGCAAGGGAAAGAGAACCAATAACCCTAATAGCGACAGCGAGGACGACGAAACCTTCTATTACCGGTATCCCTCCGCCGCTTCTTCTGCCCCGCCGCCGCCGTCGTCTTCGCAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTATATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTATTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCCTTCGTCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCTGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTGAAGGCTGCTATAGCGACTGATAATGGTCGTGCGGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTATGAGTGCGGCGCAGTTGATGGACATCTGTCTTACGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGGCCAGAACCGAAGCGGGGGAGAAGGGGTGGAGTCGGTGGTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAAGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGAAGAAGATGATTAACTGAACTTGTTTCTTTGGGAAGAGTTTGCGAAGGTACGTGGTTTTTACTGTTGTATTGTTCTTTTCTGCCGTGCTATTATACTGCGAGCCTCTGTTTCTGTTTGATTTTGGCGCATGATGTTTGGGAGGCATTGTTAGATGAAATTAAGCTTACAGACTTTAAATTTTGGCTGCCACGTCCGATAAGTAATAATGAGTTATAGCCTTATAGGTATGTAGTCGACTACATTTTGCTTCATGGTAATGTCAGGAGTATTAGGGATTGAGGTACCTACTGCCAACCTAGGGCCGTTGCCCTCCACCAATAGGTCAGAAATTTGAACCATCCACCTCCAAATACAAATGTTATGTGGAACTTAAAAGGATAGAGGTACTGCTGTTAACAGTTTATGGCCATACCATAGCAATAACCCGCCTATACTGGAATCTGGACGTGGTAATAAATACTTACCCTTCCATCCTATGTCATTTTTTTTCTTTTTTTTTCAAGAGTTAAGGATTTCTGCAGTGATAGAGAGTATAAGTTGCATATTATATCCCTTGAACATGAGCGATCTTTTTGTATTTGTGTATATTTTGGAATTCCCATATCATGATCCTGGTGTTTAATGCCATCGATCTTTTAGGGCTTGATTTCCCTTGTGCCAAGACTTCTCCAAAGGATTCAGACTCGATTAATGGTCCTAGTCCATGCTTCTTTGAACTAGCATTATTATTGTTGTTGTTGTTCTTTTTAAGAAAGAAGAACTCTCACCGAGATTAG

mRNA sequence

ATGAAGTCACCAGCAGATTCGTCTTTGCCGGAGACTCACGGTGAAAAAATGGCGCGCAAGGGAAAGAGAACCAATAACCCTAATAGCGACAGCGAGGACGACGAAACCTTCTATTACCGGTATCCCTCCGCCGCTTCTTCTGCCCCGCCGCCGCCGTCGTCTTCGCAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTATATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTATTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCCTTCGTCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCTGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTGAAGGCTGCTATAGCGACTGATAATGGTCGTGCGGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTATGAGTGCGGCGCAGTTGATGGACATCTGTCTTACGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGGCCAGAACCGAAGCGGGGGAGAAGGGGTGGAGTCGGTGGTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAAGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCAGAGTATTAGGGATTGAGGTACCTACTGCCAACCTAGGGCCGTTGCCCTCCACCAATAGTTTATGGCCATACCATAGCAATAACCCGCCTATACTGGAATCTGGACGTGGGCTTGATTTCCCTTGTGCCAAGACTTCTCCAAAGGATTCAGACTCGATTAATGGTCCTAGTCCATGCTTCTTTGAACTAGCATTATTATTGTTGTTGTTGTTCTTTTTAAGAAAGAAGAACTCTCACCGAGATTAG

Coding sequence (CDS)

ATGAAGTCACCAGCAGATTCGTCTTTGCCGGAGACTCACGGTGAAAAAATGGCGCGCAAGGGAAAGAGAACCAATAACCCTAATAGCGACAGCGAGGACGACGAAACCTTCTATTACCGGTATCCCTCCGCCGCTTCTTCTGCCCCGCCGCCGCCGTCGTCTTCGCAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTATATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTATTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCCTTCGTCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCTGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTGAAGGCTGCTATAGCGACTGATAATGGTCGTGCGGCTGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTATGAGTGCGGCGCAGTTGATGGACATCTGTCTTACGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGGCCAGAACCGAAGCGGGGGAGAAGGGGTGGAGTCGGTGGTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAAGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCAGAGTATTAGGGATTGAGGTACCTACTGCCAACCTAGGGCCGTTGCCCTCCACCAATAGTTTATGGCCATACCATAGCAATAACCCGCCTATACTGGAATCTGGACGTGGGCTTGATTTCCCTTGTGCCAAGACTTCTCCAAAGGATTCAGACTCGATTAATGGTCCTAGTCCATGCTTCTTTGAACTAGCATTATTATTGTTGTTGTTGTTCTTTTTAAGAAAGAAGAACTCTCACCGAGATTAG

Protein sequence

MKSPADSSLPETHGEKMARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGRVLGIEVPTANLGPLPSTNSLWPYHSNNPPILESGRGLDFPCAKTSPKDSDSINGPSPCFFELALLLLLLFFLRKKNSHRD

Homology

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BLAST of Lsi08G006970 vs. ExPASy Swiss-Prot
Match: Q9CAE4 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 5.7e-69
Identity = 150/236 (63.56%), Postives = 177/236 (75.00%), Query Frame = 0


Query: 22  KRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 81
           K+    +SD E+D+TFYYRY S A+   PPPS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAA---PPPSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 82  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAA 141
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 142 KQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 201
           + M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 202 RERPEP--KRGRRGGVGGRHEE-DWGSD------VGEGFEDDNWASVVDGDADQRL 249
           RERP P  KRGRR    G  EE  W +         E FE++NWASVVD +A +RL
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERL 230

[Close]

BLAST of Lsi08G006970 vs. ExPASy Swiss-Prot
Match: Q9CZ96 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus OX=10090 GN=Zcrb1 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.9e-42
Identity = 83/138 (60.14%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 75  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 134
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 135 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 194
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 195 PKNQLGPRERPEPKRGRR 213
           PKN LG RE P+ K  ++
Sbjct: 122 PKNMLGEREPPKKKEKKK 138

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BLAST of Lsi08G006970 vs. ExPASy Swiss-Prot
Match: Q499V6 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.9e-42
Identity = 83/138 (60.14%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 75  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 134
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 135 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 194
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 195 PKNQLGPRERPEPKRGRR 213
           PKN LG RE P+ K  ++
Sbjct: 122 PKNMLGEREPPKKKEKKK 138

[Close]

BLAST of Lsi08G006970 vs. ExPASy Swiss-Prot
Match: Q56JZ7 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Bos taurus OX=9913 GN=ZCRB1 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-41
Identity = 82/138 (59.42%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 75  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 134
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61

Query: 135 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 194
           D A    + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 195 PKNQLGPRERPEPKRGRR 213
           PKN LG RE P+ K  ++
Sbjct: 122 PKNMLGEREPPKKKEKKK 138

[Close]

BLAST of Lsi08G006970 vs. ExPASy Swiss-Prot
Match: Q8TBF4 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens OX=9606 GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-41
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 0


Query: 75  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 134
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 135 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 194
           D A    + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 195 PKNQLGPRERPEPKRGRRGGVGGRHEED 223
           PKN LG RE P+ K  ++       EE+
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKAPEPEEE 148

[Close]

BLAST of Lsi08G006970 vs. ExPASy TrEMBL
Match: A0A5A7SYZ1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00210 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.7e-122
Identity = 228/235 (97.02%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           MARKGK+TNNP SDS++DETFYYRYPSAASSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTG 252
           NQLGPRERPEPKRGRRGGVG RHEEDWGSDVGE FEDDNWASVVDGDADQRLLTG
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTG 235

[Close]

BLAST of Lsi08G006970 vs. ExPASy TrEMBL
Match: A0A1S3C324 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496454 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.7e-122
Identity = 228/235 (97.02%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           MARKGK+TNNP SDS++DETFYYRYPSAASSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTG 252
           NQLGPRERPEPKRGRRGGVG RHEEDWGSDVGE FEDDNWASVVDGDADQRLLTG
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTG 235

[Close]

BLAST of Lsi08G006970 vs. ExPASy TrEMBL
Match: A0A6J1JX53 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111489639 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 4.4e-117
Identity = 218/234 (93.16%), Postives = 221/234 (94.44%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           M+RKGKR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLT 251
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDD WASVVDGDADQRLLT
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLT 234

[Close]

BLAST of Lsi08G006970 vs. ExPASy TrEMBL
Match: A0A6J1FIA0 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111445663 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 7.6e-117
Identity = 218/234 (93.16%), Postives = 221/234 (94.44%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           M+RK KR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLT 251
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDDNWASVVDGDADQRLLT
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLT 234

[Close]

BLAST of Lsi08G006970 vs. ExPASy TrEMBL
Match: A0A6J1BY38 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX=3673 GN=LOC111006640 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 6.6e-113
Identity = 216/235 (91.91%), Postives = 223/235 (94.89%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           MARKGKRT NPNSDS+DDETFYYRYPSAASSAPPP SS     SSQ+HSHSS KSGGGSG
Sbjct: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSSQ----SSQAHSHSSIKSGGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTG 252
           NQLGPRERPEPKRGRRGGVG RHEEDWGSD GEGFEDDNWASVVDGDADQRLLTG
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTG 230

[Close]

BLAST of Lsi08G006970 vs. NCBI nr
Match: XP_038883985.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida])

HSP 1 Score: 452.2 bits (1162), Expect = 3.8e-123
Identity = 230/235 (97.87%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPS+SQSHFSSQSHSHSSTK  GGSG
Sbjct: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVKAAKQM+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTG 252
           NQLGPRERPEPKRGRRGGVG RHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTG
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTG 235

[Close]

BLAST of Lsi08G006970 vs. NCBI nr
Match: XP_008456528.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo] >KAA0036504.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa] >TYJ99977.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 448.4 bits (1152), Expect = 5.5e-122
Identity = 228/235 (97.02%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           MARKGK+TNNP SDS++DETFYYRYPSAASSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTG 252
           NQLGPRERPEPKRGRRGGVG RHEEDWGSDVGE FEDDNWASVVDGDADQRLLTG
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTG 235

[Close]

BLAST of Lsi08G006970 vs. NCBI nr
Match: KAG6578804.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 431.4 bits (1108), Expect = 7.0e-117
Identity = 219/238 (92.02%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           M+RK KR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGRVL 255
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDDNWASVVDGDADQRLLT   L
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSTCL 238

[Close]

BLAST of Lsi08G006970 vs. NCBI nr
Match: XP_022993724.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_022993726.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima])

HSP 1 Score: 431.0 bits (1107), Expect = 9.2e-117
Identity = 218/234 (93.16%), Postives = 221/234 (94.44%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           M+RKGKR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLT 251
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDD WASVVDGDADQRLLT
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLT 234

[Close]

BLAST of Lsi08G006970 vs. NCBI nr
Match: KAG7016330.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 430.3 bits (1105), Expect = 1.6e-116
Identity = 218/234 (93.16%), Postives = 221/234 (94.44%), Query Frame = 0


Query: 17  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 76
           M+RK KR  NPNSDS+DDETFYYRYPSA SSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 77  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 136
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 137 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 196
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 197 NQLGPRERPEPKRGRRGGVGGRHEEDWGSDVGEGFEDDNWASVVDGDADQRLLT 251
           NQLGPRERPEPKR R+GGVG RHEEDWGSD GEGFEDDNWASVVDGDADQRLLT
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLT 234

[Close]

BLAST of Lsi08G006970 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 262.7 bits (670), Expect = 4.0e-70
Identity = 150/236 (63.56%), Postives = 177/236 (75.00%), Query Frame = 0


Query: 22  KRTNNPNSDSEDDETFYYRYPSAASSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 81
           K+    +SD E+D+TFYYRY S A+   PPPS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAA---PPPSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 82  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAA 141
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 142 KQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 201
           + M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 202 RERPEP--KRGRRGGVGGRHEE-DWGSD------VGEGFEDDNWASVVDGDADQRL 249
           RERP P  KRGRR    G  EE  W +         E FE++NWASVVD +A +RL
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERL 230

[Close]

BLAST of Lsi08G006970 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 76  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 135
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 136 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 166
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of Lsi08G006970 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 76  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 135
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 136 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 166
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of Lsi08G006970 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-10
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 80  PSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVK 139
           P  S + V N  +S +   L   FS FG+IA V ++KD   ++S+G AF+QF SQDDA  
Sbjct: 37  PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query: 140 AAKQMHGKILNGRVLKAAIATDNGR 165
           A + M  ++ NGR++   IA    R
Sbjct: 97  AIETMDRRMYNGRMIYIDIAKPGKR 121

[Close]

BLAST of Lsi08G006970 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-09
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 85  VYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQM 144
           ++VS      T+  L  LFS FG+I    +++D +T++ +G  F+ F S+DDA KA K +
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 145 HGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKS 179
            GKI++GR++   +A    + AE +R  +  +K+
Sbjct: 69  DGKIVDGRLIFVEVA----KNAEEVRAGINSNKA 98

The following BLAST results are available for this feature:

BLAST of Lsi08G006970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAE4	5.7e-69	63.56	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9CZ96	5.9e-42	60.14	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus...	[more]
Q499V6	5.9e-42	60.14	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norve...	[more]
Q56JZ7	2.9e-41	59.42	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Bos taurus O...	[more]
Q8TBF4	2.9e-41	57.43	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens...	[more]

BLAST of Lsi08G006970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYZ1	2.7e-122	97.02	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. maku...	[more]
A0A1S3C324	2.7e-122	97.02	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JX53	4.4e-117	93.16	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=36...	[more]
A0A6J1FIA0	7.6e-117	93.16	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=...	[more]
A0A6J1BY38	6.6e-113	91.91	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX...	[more]

BLAST of Lsi08G006970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883985.1	3.8e-123	97.87	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida]	[more]
XP_008456528.1	5.5e-122	97.02	PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo]...	[more]
KAG6578804.1	7.0e-117	92.02	U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyr...	[more]
XP_022993724.1	9.2e-117	93.16	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_02...	[more]
KAG7016330.1	1.6e-116	93.16	U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyr...	[more]

BLAST of Lsi08G006970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10400.1	4.0e-70	63.56	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G23830.1	3.2e-11	37.78	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	3.2e-11	37.78	glycine-rich RNA-binding protein 4	[more]
AT4G20030.1	4.7e-10	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	1.4e-09	34.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 84..157 e-value: 9.0E-25 score: 98.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 85..155 e-value: 2.4E-21 score: 75.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 83..161 score: 18.973166
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 84..157 e-value: 1.2E-5 score: 34.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..158 e-value: 2.2E-27 score: 97.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..230
None	No IPR available	PANTHER	PTHR46259:SF1	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 28..250
IPR044598	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	PANTHER	PTHR46259	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 28..250
IPR034219	ZCRB1, RNA recognition motif	CDD	cd12393	RRM_ZCRB1	coord: 82..159 e-value: 5.63959E-41 score: 135.906
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 26..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G006970.1	Lsi08G006970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding