Lsi08G005270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G005270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	pathogen-related protein-like isoform X2
Location	chr08: 13214587 .. 13215595 (+)
RNA-Seq Expression	Lsi08G005270
Synteny	Lsi08G005270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGTTCCATAAGATATCACGCAGTGACTTCAGAACAATTGATTCAAACAAGTATACTTTCAGTCTTAATGGTATGAAGAACATAGGAAATTGCATCCTAAATTTTTTAATCTTATGATAATCATATGTTGTTTCATCAAGTTGATGATAAACTAAACAAAACAAAACATTTCTCAATTCTCAGGAAGAAAGCCTTTAGCTGCTGATGAAGTAAGTAAACTTGGAGGTTACAATCCCTTCCTTCAGACCTCCCTCCCTGAGGAGTACAGGTACTGTTGGAATCGGTTCCAAATGACCAAACATGGAGTTTTATATCAAACCTAGTTTATATTCGTTTGTGCGTTATTTATGTTTTTGGCCTAGAGATTAGAGATGTGTCATATATCAACTCTTTAACTTTATTGGCCCTTTTACAATCCATATTATATGATATTTTTCTTTAATAAAAAACTAATCTCTCATTCTGCCATAGATATAGCTAACATATTGTTAGTAAACCTCGAAAATCTCTGTCGATTTTTTTTACTGTTTACGTTTCCTCGCTTTCTTTGATTGTCGATTTCATAATAGATACTATAATGCTGCTACGGAGACTGCCGAATCGTCTCACCGAGCTTTCACTTCAACGTTCCTTAGAGGTTTTGCTCTTGAAATTATCCAAGTTTATTCAGGCCCCCCAAATATTGTGTTCAAGTTCAGGCATTGGGGCTACATGGAGGGGCCTTTCAAAAGCCATGCCCCCACTGGGGAGAGAATTGAATTCTATGGAGTTGCTATTTTTAAGGTAGGATCCAACTTCAGTTCTTGCTTATATGTTACACTTTTTATCTTGTTCTTTATTGAACTTTTTGATGAACCAGGTGAATGAGAAAGATAAGATTGAGGGGGTGGAGTTCTTTTTTGACCCAGCGGAATTGCTTGGAAAACTTCTGAAAGGTCCTGGCTTGGATGGCTCGGTTGAAAAGGCGGTTTCGAGCTGTCCTGTCTTGAGAAACACAGGGTAG

mRNA sequence

ATGGAAATGTTCCATAAGATATCACGCAGTGACTTCAGAACAATTGATTCAAACAAGTATACTTTCAGTCTTAATGGCCCCCCAAATATTGTGTTCAAGTTCAGGCATTGGGGCTACATGGAGGGGCCTTTCAAAAGCCATGCCCCCACTGGGGAGAGAATTGAATTCTATGGAGTTGCTATTTTTAAGGTGAATGAGAAAGATAAGATTGAGGGGGTGGAGTTCTTTTTTGACCCAGCGGAATTGCTTGGAAAACTTCTGAAAGGTCCTGGCTTGGATGGCTCGGTTGAAAAGGCGGTTTCGAGCTGTCCTGTCTTGAGAAACACAGGGTAG

Coding sequence (CDS)

ATGGAAATGTTCCATAAGATATCACGCAGTGACTTCAGAACAATTGATTCAAACAAGTATACTTTCAGTCTTAATGGCCCCCCAAATATTGTGTTCAAGTTCAGGCATTGGGGCTACATGGAGGGGCCTTTCAAAAGCCATGCCCCCACTGGGGAGAGAATTGAATTCTATGGAGTTGCTATTTTTAAGGTGAATGAGAAAGATAAGATTGAGGGGGTGGAGTTCTTTTTTGACCCAGCGGAATTGCTTGGAAAACTTCTGAAAGGTCCTGGCTTGGATGGCTCGGTTGAAAAGGCGGTTTCGAGCTGTCCTGTCTTGAGAAACACAGGGTAG

Protein sequence

MEMFHKISRSDFRTIDSNKYTFSLNGPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYGVAIFKVNEKDKIEGVEFFFDPAELLGKLLKGPGLDGSVEKAVSSCPVLRNTG

Homology

[Close]

BLAST of Lsi08G005270 vs. ExPASy Swiss-Prot
Match: P16273 (Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-19
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 22  FSLNGPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYGVAIFKVNEKDKIEGVEFFFDPAE 81
           +S    P I FKFRHWGYMEGPFK H P G R+EF+GV +F V+E  K+E  EFF++   
Sbjct: 151 YSSPSAPRIAFKFRHWGYMEGPFKGHPPHGGRVEFFGVCVFHVDEDTKVEKAEFFYERGN 210

Query: 82  LLGKLLKGPGLDGSVEKAVSSCPVLR 108
            L   L  P    S     S CPV+R
Sbjct: 211 FLASFLTAPAASAS----ASGCPVMR 232

[Close]

BLAST of Lsi08G005270 vs. ExPASy TrEMBL
Match: A0A5D3DJI2 (Pathogen-related protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00350 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.3e-45
Identity = 101/172 (58.72%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKIS SDF+TID NKYTF LN                                   
Sbjct: 63  MEMFHKISPSDFKTIDVNKYTFCLNGRKPLAIGEVSKLGGYNPFLQTALPDEYRYYNAEK 122

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPF++HA TGERIEFYG
Sbjct: 123 ETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFRNHAATGERIEFYG 182

[Close]

BLAST of Lsi08G005270 vs. ExPASy TrEMBL
Match: A0A1S4DU25 (pathogen-related protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485647 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.3e-45
Identity = 101/172 (58.72%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKIS SDF+TID NKYTF LN                                   
Sbjct: 63  MEMFHKISPSDFKTIDVNKYTFCLNGRKPLAIGEVSKLGGYNPFLQTALPDEYRYYNAEK 122

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPF++HA TGERIEFYG
Sbjct: 123 ETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFRNHAATGERIEFYG 182

[Close]

BLAST of Lsi08G005270 vs. ExPASy TrEMBL
Match: Q700J9 (Putative pathogenesis-related protein OS=Cucumis sativus OX=3659 GN=pr PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.4e-45
Identity = 102/172 (59.30%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKIS SDF+TID NKYTFSLN                                   
Sbjct: 1   MEMFHKISPSDFKTIDVNKYTFSLNGRKPLAVGQVSKLGGYNPFLQTSLPDEYRYYNAEK 60

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPFK+HAPTGE IEFYG
Sbjct: 61  ETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFKNHAPTGEIIEFYG 120

[Close]

BLAST of Lsi08G005270 vs. ExPASy TrEMBL
Match: A0A0A0KF98 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338110 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.4e-45
Identity = 102/172 (59.30%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKIS SDF+TID NKYTFSLN                                   
Sbjct: 63  MEMFHKISPSDFKTIDVNKYTFSLNGRKPLAVGQVSKLGGYNPFLQTSLPDEYRYYNAEK 122

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPFK+HAPTGE IEFYG
Sbjct: 123 ETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFKNHAPTGEIIEFYG 182

[Close]

BLAST of Lsi08G005270 vs. ExPASy TrEMBL
Match: A0A1S4DTY2 (pathogen-related protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485647 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.0e-41
Identity = 101/197 (51.27%), Postives = 106/197 (53.81%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKIS SDF+TID NKYTF LN                                   
Sbjct: 63  MEMFHKISPSDFKTIDVNKYTFCLNGRKPLAIGEVSKLGGYNPFLQTALPDEYRYYNAEK 122

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPF++HA TGERIEFYG
Sbjct: 123 ETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFRNHAATGERIEFYG 182

[Close]

BLAST of Lsi08G005270 vs. NCBI nr
Match: XP_038885265.1 (pathogen-related protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 103/172 (59.88%), Postives = 107/172 (62.21%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKISR+DFRT+D +KYTFSLN                                   
Sbjct: 63  MEMFHKISRNDFRTLDLDKYTFSLNGRKPLAVEEVSKLGGYNPFLQTSLPEEYRYYNAAK 122

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG
Sbjct: 123 ETAESSHRTFSATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 182

[Close]

BLAST of Lsi08G005270 vs. NCBI nr
Match: XP_016899458.1 (PREDICTED: pathogen-related protein-like isoform X2 [Cucumis melo] >KAA0058902.1 pathogen-related protein-like isoform X2 [Cucumis melo var. makuwa] >TYK23722.1 pathogen-related protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 6.9e-45
Identity = 101/172 (58.72%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKIS SDF+TID NKYTF LN                                   
Sbjct: 63  MEMFHKISPSDFKTIDVNKYTFCLNGRKPLAIGEVSKLGGYNPFLQTALPDEYRYYNAEK 122

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPF++HA TGERIEFYG
Sbjct: 123 ETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFRNHAATGERIEFYG 182

[Close]

BLAST of Lsi08G005270 vs. NCBI nr
Match: CAF33484.1 (putative pathogenesis-related protein [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 9.0e-45
Identity = 102/172 (59.30%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKIS SDF+TID NKYTFSLN                                   
Sbjct: 1   MEMFHKISPSDFKTIDVNKYTFSLNGRKPLAVGQVSKLGGYNPFLQTSLPDEYRYYNAEK 60

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPFK+HAPTGE IEFYG
Sbjct: 61  ETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFKNHAPTGEIIEFYG 120

[Close]

BLAST of Lsi08G005270 vs. NCBI nr
Match: XP_031743307.1 (pathogen-related protein isoform X1 [Cucumis sativus] >XP_031743308.1 pathogen-related protein isoform X1 [Cucumis sativus] >XP_031743309.1 pathogen-related protein isoform X1 [Cucumis sativus] >XP_031743310.1 pathogen-related protein isoform X1 [Cucumis sativus] >XP_031743311.1 pathogen-related protein isoform X1 [Cucumis sativus] >XP_031743312.1 pathogen-related protein isoform X1 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 9.0e-45
Identity = 102/172 (59.30%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKIS SDF+TID NKYTFSLN                                   
Sbjct: 63  MEMFHKISPSDFKTIDVNKYTFSLNGRKPLAVGQVSKLGGYNPFLQTSLPDEYRYYNAEK 122

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPFK+HAPTGE IEFYG
Sbjct: 123 ETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFKNHAPTGEIIEFYG 182

[Close]

BLAST of Lsi08G005270 vs. NCBI nr
Match: XP_011657303.2 (pathogen-related protein isoform X2 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 9.0e-45
Identity = 102/172 (59.30%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MEMFHKISRSDFRTIDSNKYTFSLN----------------------------------- 60
           MEMFHKIS SDF+TID NKYTFSLN                                   
Sbjct: 63  MEMFHKISPSDFKTIDVNKYTFSLNGRKPLAVGQVSKLGGYNPFLQTSLPDEYRYYNAEK 122

Query: 61  ---------------------------GPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYG 111
                                      GPPNIVFKFRHWGYMEGPFK+HAPTGE IEFYG
Sbjct: 123 ETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFKNHAPTGEIIEFYG 182

[Close]

BLAST of Lsi08G005270 vs. TAIR 10
Match: AT1G78780.1 (pathogenesis-related family protein )

HSP 1 Score: 97.4 bits (241), Expect = 7.4e-21
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 25  NGPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYGVAIFKVNEKDKIEGVEFFFDPAELLG 84
           +GPP I FKFRHWGY EG FK HAPTGE ++F G+ + KV+E  + E +E ++DP EL G
Sbjct: 87  SGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLGVLKVDESLRAEEIEIYYDPGELFG 146

Query: 85  KLLKGPGL---------DGSVEKAVSSCP 105
            LLKGP +         D + EK   SCP
Sbjct: 147 GLLKGPPISETKTTDSGDNTAEK--QSCP 173

[Close]

BLAST of Lsi08G005270 vs. TAIR 10
Match: AT1G78780.2 (pathogenesis-related family protein )

HSP 1 Score: 97.4 bits (241), Expect = 7.4e-21
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 25  NGPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYGVAIFKVNEKDKIEGVEFFFDPAELLG 84
           +GPP I FKFRHWGY EG FK HAPTGE ++F G+ + KV+E  + E +E ++DP EL G
Sbjct: 149 SGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLGVLKVDESLRAEEIEIYYDPGELFG 208

Query: 85  KLLKGPGL---------DGSVEKAVSSCP 105
            LLKGP +         D + EK   SCP
Sbjct: 209 GLLKGPPISETKTTDSGDNTAEK--QSCP 235

[Close]

BLAST of Lsi08G005270 vs. TAIR 10
Match: AT1G78780.3 (pathogenesis-related family protein )

HSP 1 Score: 97.4 bits (241), Expect = 7.4e-21
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 25  NGPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYGVAIFKVNEKDKIEGVEFFFDPAELLG 84
           +GPP I FKFRHWGY EG FK HAPTGE ++F G+ + KV+E  + E +E ++DP EL G
Sbjct: 87  SGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLGVLKVDESLRAEEIEIYYDPGELFG 146

Query: 85  KLLKGPGL---------DGSVEKAVSSCP 105
            LLKGP +         D + EK   SCP
Sbjct: 147 GLLKGPPISETKTTDSGDNTAEK--QSCP 173

[Close]

BLAST of Lsi08G005270 vs. TAIR 10
Match: AT1G78780.4 (pathogenesis-related family protein )

HSP 1 Score: 97.4 bits (241), Expect = 7.4e-21
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 25  NGPPNIVFKFRHWGYMEGPFKSHAPTGERIEFYGVAIFKVNEKDKIEGVEFFFDPAELLG 84
           +GPP I FKFRHWGY EG FK HAPTGE ++F G+ + KV+E  + E +E ++DP EL G
Sbjct: 146 SGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLGVLKVDESLRAEEIEIYYDPGELFG 205

Query: 85  KLLKGPGL---------DGSVEKAVSSCP 105
            LLKGP +         D + EK   SCP
Sbjct: 206 GLLKGPPISETKTTDSGDNTAEK--QSCP 232

The following BLAST results are available for this feature:

BLAST of Lsi08G005270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P16273	5.2e-19	48.84	Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2	[more]

BLAST of Lsi08G005270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJI2	3.3e-45	58.72	Pathogen-related protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S4DU25	3.3e-45	58.72	pathogen-related protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485647...	[more]
Q700J9	4.4e-45	59.30	Putative pathogenesis-related protein OS=Cucumis sativus OX=3659 GN=pr PE=2 SV=1	[more]
A0A0A0KF98	4.4e-45	59.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338110 PE=4 SV=1	[more]
A0A1S4DTY2	5.0e-41	51.27	pathogen-related protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485647...	[more]

BLAST of Lsi08G005270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885265.1	1.4e-45	59.88	pathogen-related protein-like isoform X1 [Benincasa hispida]	[more]
XP_016899458.1	6.9e-45	58.72	PREDICTED: pathogen-related protein-like isoform X2 [Cucumis melo] >KAA0058902.1...	[more]
CAF33484.1	9.0e-45	59.30	putative pathogenesis-related protein [Cucumis sativus]	[more]
XP_031743307.1	9.0e-45	59.30	pathogen-related protein isoform X1 [Cucumis sativus] >XP_031743308.1 pathogen-r...	[more]
XP_011657303.2	9.0e-45	59.30	pathogen-related protein isoform X2 [Cucumis sativus]	[more]

BLAST of Lsi08G005270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78780.1	7.4e-21	50.56	pathogenesis-related family protein	[more]
AT1G78780.2	7.4e-21	50.56	pathogenesis-related family protein	[more]
AT1G78780.3	7.4e-21	50.56	pathogenesis-related family protein	[more]
AT1G78780.4	7.4e-21	50.56	pathogenesis-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 10..89 e-value: 2.4E-6 score: 29.5
None	No IPR available	PANTHER	PTHR31723:SF8	PATHOGEN-RELATED PROTEIN-LIKE	coord: 1..26 coord: 25..110
None	No IPR available	PANTHER	PTHR31723	PATHOGENESIS-RELATED FAMILY PROTEIN	coord: 1..26 coord: 25..110
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 25..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G005270.1	Lsi08G005270.1	mRNA