Lsi08G005060 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G005060
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionBEST Arabidopsis thaliana protein match is: embryo defective 2170 .
Locationchr08: 12969938 .. 12971479 (-)
RNA-Seq ExpressionLsi08G005060
SyntenyLsi08G005060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCACTATACCCACCACTCGCCTCTCTGGCTTCAAACCGTACCACAAACAAACCATTTCAACCATCTCCTCTGTTTCTCTCTCCCAAATTCCTTCCTCCACATTTCCCCAGACCAAAATTCGAAAAAAAAAAAATCCAAATCCATGGACGATATTAGGACGAAATTCCCAAGAAAACCTACCCATATCCCAGATCCTATCCCACGAACAGCCACTTCCTATTATAAATCTCCAGAACATGACTCCACATCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCCGAATCCGGGGTTTGTTCACCCACGCTTTGGGCTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCCCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTTTCTCTCAAAGATCTCGTCGAACATCACTTGACTAATTCGAAACGCCAACAAGACGGTGACGCTACTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCCTAGCAAGACCCGGAGTGAAACTAGGGCACTCGTTACCAGAAGTAGAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTTGGGCAGGTTTCGGCTAAAAAGAAGAGTAATCTCAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCTCCTAAGCCACCGCCAGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTAGCCGGCGGTGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGGTAAACCAACAAAATTTTGATGAATTGCAATTGATGAGCCCTAATTTTGGCTTGATTTTTATTGAATCCTGACAAAAACCCAATTCCAGAATTGAAAACATTCAATCAACTGACTTAGGAATTGGAATCGTCAGCCAATAATTGTTTGGTGGTTGGAATTTTGGCTAACAGTCTGAATCTTGGATTTGTTATTTCACTTGTTTTTTTTTTGGCTTTATATGATCAATGAATTTTGGTAATTGTGGGTAATAATTCAAGAATTTTGACTTTGTTTATTTGATGTACAGGAATTCTGAATCGCAAGGAAGTTGCTGGTTTTGTATCAGTCCAATGAGAAGTAAAGATCATCGAGAGTAAAACAGCTTCATCGGAGTATTCAAATGAAATGAATCTTAATATGTAATTTCCTTTGAATAATGTTTTGGTATAATTCCCACTTAATCACAGCTGAATTTTGCAGCTAAGCTTGTTTATATCTTTTTGTTTTATTTCTACTTTTTTCCTTTAAAAAACGATTCCTTGTCTTTATCCTCTCTTTCTTCATCTCTATTTTAATTTCCATGTTATATGTATATGTATATGTATGTATGTATATATATATATATATATATATATTGTTAACCAG

mRNA sequence

CTCCACTATACCCACCACTCGCCTCTCTGGCTTCAAACCGTACCACAAACAAACCATTTCAACCATCTCCTCTGTTTCTCTCTCCCAAATTCCTTCCTCCACATTTCCCCAGACCAAAATTCGAAAAAAAAAAAATCCAAATCCATGGACGATATTAGGACGAAATTCCCAAGAAAACCTACCCATATCCCAGATCCTATCCCACGAACAGCCACTTCCTATTATAAATCTCCAGAACATGACTCCACATCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCCGAATCCGGGGTTTGTTCACCCACGCTTTGGGCTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCCCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTTTCTCTCAAAGATCTCGTCGAACATCACTTGACTAATTCGAAACGCCAACAAGACGGTGACGCTACTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCCTAGCAAGACCCGGAGTGAAACTAGGGCACTCGTTACCAGAAGTAGAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTTGGGCAGGTTTCGGCTAAAAAGAAGAGTAATCTCAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCTCCTAAGCCACCGCCAGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTAGCCGGCGGTGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGGAATTCTGAATCGCAAGGAAGTTGCTGGTTTTGTATCAGTCCAATGAGAAGTAAAGATCATCGAGAGTAAAACAGCTTCATCGGAGTATTCAAATGAAATGAATCTTAATATGTAATTTCCTTTGAATAATGTTTTGGTATAATTCCCACTTAATCACAGCTGAATTTTGCAGCTAAGCTTGTTTATATCTTTTTGTTTTATTTCTACTTTTTTCCTTTAAAAAACGATTCCTTGTCTTTATCCTCTCTTTCTTCATCTCTATTTTAATTTCCATGTTATATGTATATGTATATGTATGTATGTATATATATATATATATATATATATTGTTAACCAG

Coding sequence (CDS)

ATGGACGATATTAGGACGAAATTCCCAAGAAAACCTACCCATATCCCAGATCCTATCCCACGAACAGCCACTTCCTATTATAAATCTCCAGAACATGACTCCACATCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCCGAATCCGGGGTTTGTTCACCCACGCTTTGGGCTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCCCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTTTCTCTCAAAGATCTCGTCGAACATCACTTGACTAATTCGAAACGCCAACAAGACGGTGACGCTACTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCCTAGCAAGACCCGGAGTGAAACTAGGGCACTCGTTACCAGAAGTAGAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTTGGGCAGGTTTCGGCTAAAAAGAAGAGTAATCTCAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCTCCTAAGCCACCGCCAGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTAGCCGGCGGTGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGGAATTCTGAATCGCAAGGAAGTTGCTGGTTTTGTATCAGTCCAATGAGAAGTAAAGATCATCGAGAGTAA

Protein sequence

MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKDHRE
Homology
BLAST of Lsi08G005060 vs. ExPASy TrEMBL
Match: A0A1S3B3A7 (uncharacterized protein LOC103485667 OS=Cucumis melo OX=3656 GN=LOC103485667 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 4.0e-127
Identity = 247/277 (89.17%), Postives = 255/277 (92.06%), Query Frame = 0

Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TKFP      P PIP    SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKFP------PKPIPPNPDSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLWASNSRT+PQFHR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWASNSRTTPQFHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKM 180
           VEHHLTNSKRQQDG   SLSRDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLKM
Sbjct: 121 VEHHLTNSKRQQDGAVASLSRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLKM 180

Query: 181 FFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGS 240
           FFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGGS
Sbjct: 181 FFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGGS 240

Query: 241 MTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 278
           MTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD
Sbjct: 241 MTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 269

BLAST of Lsi08G005060 vs. ExPASy TrEMBL
Match: A0A0A0KCW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G349820 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 7.0e-124
Identity = 244/278 (87.77%), Postives = 253/278 (91.01%), Query Frame = 0

Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TK P KP            SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKLPPKP-----------DSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQF-HRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD 120
           V SPTLWASNSRT+PQF HR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD
Sbjct: 61  VSSPTLWASNSRTTPQFHHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD 120

Query: 121 LVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLK 180
           LVEHHLTNSKRQQDGD  SL+RDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLK
Sbjct: 121 LVEHHLTNSKRQQDGDVASLTRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLK 180

Query: 181 MFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGG 240
           MFFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGG
Sbjct: 181 MFFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGG 240

Query: 241 SMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 278
           SMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD
Sbjct: 241 SMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 265

BLAST of Lsi08G005060 vs. ExPASy TrEMBL
Match: A0A5D3DJL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001120 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.5e-115
Identity = 228/258 (88.37%), Postives = 236/258 (91.47%), Query Frame = 0

Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TKFP      P PIP    SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKFP------PKPIPPNPDSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLWASNSRT+PQFHR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWASNSRTTPQFHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKM 180
           VEHHLTNSKRQQDG   SLSRDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLKM
Sbjct: 121 VEHHLTNSKRQQDGAVASLSRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLKM 180

Query: 181 FFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGS 240
           FFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGGS
Sbjct: 181 FFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGGS 240

Query: 241 MTSSGSSNSTSSERSNSR 259
           MTSSGSSNSTSSERSNSR
Sbjct: 241 MTSSGSSNSTSSERSNSR 250

BLAST of Lsi08G005060 vs. ExPASy TrEMBL
Match: A0A6J1FJY2 (uncharacterized protein LOC111444710 OS=Cucurbita moschata OX=3662 GN=LOC111444710 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 5.4e-100
Identity = 208/243 (85.60%), Postives = 218/243 (89.71%), Query Frame = 0

Query: 35  TSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAI 94
           T+EDCIIFRGWDSAA  DDDSQSESGVCSPTLW SNSRT+ QFHRPRNRSLSPTSRTQAI
Sbjct: 7   TAEDCIIFRGWDSAAG-DDDSQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAI 66

Query: 95  ARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDP 154
           ARGQQELMEMVRNMPESSYELSLKDLVEHHL+NS+R QDGDA SLSRDDS+SETSFRRD 
Sbjct: 67  ARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSER-QDGDA-SLSRDDSASETSFRRDT 126

Query: 155 SKTRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPP 214
           SKTRSETRALVTRSRSVD+GGFYLKMF PLPFGQ+SAKKK NLRTDSGL+ SSRVSPKPP
Sbjct: 127 SKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPP 186

Query: 215 PVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMR 274
           PVDR+WWRKRS      NEGS+SG      GSSNSTSSER  SRNSESQG CWFCISPMR
Sbjct: 187 PVDREWWRKRS------NEGSVSG------GSSNSTSSER--SRNSESQGGCWFCISPMR 232

Query: 275 SKD 278
           SKD
Sbjct: 247 SKD 232

BLAST of Lsi08G005060 vs. ExPASy TrEMBL
Match: A0A6J1K1H6 (uncharacterized protein LOC111489776 OS=Cucurbita maxima OX=3661 GN=LOC111489776 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.7e-99
Identity = 207/243 (85.19%), Postives = 217/243 (89.30%), Query Frame = 0

Query: 35  TSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAI 94
           T+EDCIIFRGWDSAA  DDDSQ ESGVCSPTLW SNSRT+ QFHRPRNRSLSPTSRTQAI
Sbjct: 7   TAEDCIIFRGWDSAAG-DDDSQLESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAI 66

Query: 95  ARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDP 154
           ARGQQELMEMVRNMPESSYELSLKDLVEHHL+NS+R QDGDA SLSRDDS+SETSFRRD 
Sbjct: 67  ARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSER-QDGDA-SLSRDDSASETSFRRDT 126

Query: 155 SKTRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPP 214
           SKTRSETRALVTRSRSVD+GGFYLKMF PLPFGQ+SAKKK NLRTDSGL+ SSRVSPKPP
Sbjct: 127 SKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPP 186

Query: 215 PVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMR 274
           PVDR+WWRKRS      NEGS+SG      GSSNSTSSER  SRNSESQG CWFCISPMR
Sbjct: 187 PVDREWWRKRS------NEGSVSG------GSSNSTSSER--SRNSESQGGCWFCISPMR 232

Query: 275 SKD 278
           SKD
Sbjct: 247 SKD 232

BLAST of Lsi08G005060 vs. NCBI nr
Match: XP_008441584.1 (PREDICTED: uncharacterized protein LOC103485667 [Cucumis melo])

HSP 1 Score: 464.2 bits (1193), Expect = 8.2e-127
Identity = 247/277 (89.17%), Postives = 255/277 (92.06%), Query Frame = 0

Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TKFP      P PIP    SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKFP------PKPIPPNPDSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLWASNSRT+PQFHR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWASNSRTTPQFHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKM 180
           VEHHLTNSKRQQDG   SLSRDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLKM
Sbjct: 121 VEHHLTNSKRQQDGAVASLSRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLKM 180

Query: 181 FFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGS 240
           FFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGGS
Sbjct: 181 FFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGGS 240

Query: 241 MTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 278
           MTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD
Sbjct: 241 MTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 269

BLAST of Lsi08G005060 vs. NCBI nr
Match: XP_038885358.1 (uncharacterized protein LOC120075766 [Benincasa hispida])

HSP 1 Score: 456.1 bits (1172), Expect = 2.2e-124
Identity = 244/279 (87.46%), Postives = 254/279 (91.04%), Query Frame = 0

Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DIRTKFPRK  H PD      ++YYKSP+ D   EDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDIRTKFPRKSAHTPD------STYYKSPDQD---EDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLW SNSRTSPQFHRPRNRSLSPTSR QAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWGSNSRTSPQFHRPRNRSLSPTSRIQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGD--ATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYL 180
           VEHHLTNSKRQQDGD  A SL+RDDSSSETSFRRD SKTRSETR LVTRSRSVD+GGFYL
Sbjct: 121 VEHHLTNSKRQQDGDCAAASLARDDSSSETSFRRDSSKTRSETRGLVTRSRSVDSGGFYL 180

Query: 181 KMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISG 240
           KMF PLPFGQVSAKKK+NLRTDSGLSG SRVSPKPPPV++DWWRKRS+VAGGENEGSISG
Sbjct: 181 KMFLPLPFGQVSAKKKTNLRTDSGLSGGSRVSPKPPPVEKDWWRKRSAVAGGENEGSISG 240

Query: 241 GSMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 278
           GSM SSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD
Sbjct: 241 GSMMSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 270

BLAST of Lsi08G005060 vs. NCBI nr
Match: XP_004144253.1 (uncharacterized protein LOC101219576 [Cucumis sativus] >KGN47505.1 hypothetical protein Csa_019018 [Cucumis sativus])

HSP 1 Score: 453.4 bits (1165), Expect = 1.5e-123
Identity = 244/278 (87.77%), Postives = 253/278 (91.01%), Query Frame = 0

Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TK P KP            SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKLPPKP-----------DSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQF-HRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD 120
           V SPTLWASNSRT+PQF HR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD
Sbjct: 61  VSSPTLWASNSRTTPQFHHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKD 120

Query: 121 LVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLK 180
           LVEHHLTNSKRQQDGD  SL+RDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLK
Sbjct: 121 LVEHHLTNSKRQQDGDVASLTRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLK 180

Query: 181 MFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGG 240
           MFFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGG
Sbjct: 181 MFFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGG 240

Query: 241 SMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 278
           SMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD
Sbjct: 241 SMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMRSKD 265

BLAST of Lsi08G005060 vs. NCBI nr
Match: TYK23785.1 (uncharacterized protein E5676_scaffold1607G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 424.5 bits (1090), Expect = 7.2e-115
Identity = 228/258 (88.37%), Postives = 236/258 (91.47%), Query Frame = 0

Query: 1   MDDIRTKFPRKPTHIPDPIPRTATSYYKSPEHDSTSEDCIIFRGWDSAAAVDDDSQSESG 60
           M DI TKFP      P PIP    SYYKSPEH+  SEDCIIFRGWDSAAA+DDDSQSESG
Sbjct: 1   MGDINTKFP------PKPIPPNPDSYYKSPEHN--SEDCIIFRGWDSAAAIDDDSQSESG 60

Query: 61  VCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120
           V SPTLWASNSRT+PQFHR RNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL
Sbjct: 61  VSSPTLWASNSRTTPQFHRHRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDL 120

Query: 121 VEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDNGGFYLKM 180
           VEHHLTNSKRQQDG   SLSRDDSSSETSFRRDPSK R ETRALVTRSRSVD+GGFYLKM
Sbjct: 121 VEHHLTNSKRQQDGAVASLSRDDSSSETSFRRDPSKNRGETRALVTRSRSVDSGGFYLKM 180

Query: 181 FFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGS 240
           FFPLPFGQVSAKKK+NLRTDSGLSGSSRVSPKPPPVD+DWWRKRSSV+GGEN+GSISGGS
Sbjct: 181 FFPLPFGQVSAKKKNNLRTDSGLSGSSRVSPKPPPVDKDWWRKRSSVSGGENDGSISGGS 240

Query: 241 MTSSGSSNSTSSERSNSR 259
           MTSSGSSNSTSSERSNSR
Sbjct: 241 MTSSGSSNSTSSERSNSR 250

BLAST of Lsi08G005060 vs. NCBI nr
Match: KAG6578929.1 (TOM1-like protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 374.0 bits (959), Expect = 1.1e-99
Identity = 208/243 (85.60%), Postives = 218/243 (89.71%), Query Frame = 0

Query: 35  TSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAI 94
           T+EDCIIFRGWDSAA  DDDSQSESGVCSPTLW SNSRT+ QFHRPRNRSLSPTSRTQAI
Sbjct: 7   TAEDCIIFRGWDSAAG-DDDSQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAI 66

Query: 95  ARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDP 154
           ARGQQELMEMVRNMPESSYELSLKDLVEHHL+NS+R QDGDA SLSRDDS+SETSFRRD 
Sbjct: 67  ARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSER-QDGDA-SLSRDDSASETSFRRDT 126

Query: 155 SKTRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPP 214
           SKTRSETRALVTRSRSVD+GGFYLKMF PLPFGQ+SAKKK NLRTDSGL+ SSRVSPKPP
Sbjct: 127 SKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPP 186

Query: 215 PVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRNSESQGSCWFCISPMR 274
           PVDR+WWRKRS      NEGS+SG      GSSNSTSSER  SRNSESQG CWFCISPMR
Sbjct: 187 PVDREWWRKRS------NEGSVSG------GSSNSTSSER--SRNSESQGGCWFCISPMR 232

Query: 275 SKD 278
           SKD
Sbjct: 247 SKD 232

BLAST of Lsi08G005060 vs. TAIR 10
Match: AT1G21390.1 (embryo defective 2170 )

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-23
Identity = 88/225 (39.11%), Postives = 118/225 (52.44%), Query Frame = 0

Query: 50  AVDDDSQSESGVCSPTLW-ASNSRTSPQFHRPRNR-SLSPTSRTQAIARGQQELMEMVRN 109
           ++ +D  S+SGVCSPTLW  S  ++ P FHRP +  SLSP S+ QAIARGQ+ELMEMV  
Sbjct: 18  SIPNDDHSDSGVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRELMEMVSK 77

Query: 110 MPESSYELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTR 169
           MPES YELSLKDLVE  +     ++  D      +  S          KT+S+ R    R
Sbjct: 78  MPESCYELSLKDLVEVKVNQENERKVFDELPKRANRQSKVV------RKTKSDKRVDPNR 137

Query: 170 SRSVDNGGFYLKMFFPLPFGQV--SAKKKSNLRTDSGLSGSSRVSPKPPPV---DRDWWR 229
           S   +N GF LK+ F +  G +  + KKK   + D     S R S     V   D++WW 
Sbjct: 138 SGGGNNSGFLLKIMFLVSLGAMKDTTKKKKKKKKDEACKVSPRPSISEETVKVEDKEWWN 197

Query: 230 KRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRNSESQGSCW 268
           +            +S  S   SGSS+S +S RS S   + + SC+
Sbjct: 198 R------------MSESSTKRSGSSSSNNSIRSRSSLRDEKSSCF 224

BLAST of Lsi08G005060 vs. TAIR 10
Match: AT1G76980.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 61 Blast hits to 61 proteins in 18 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 2; Plants - 40; Viruses - 3; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-21
Identity = 91/237 (38.40%), Postives = 125/237 (52.74%), Query Frame = 0

Query: 54  DSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSY 113
           D  S+SGVCSP LW ++   SP       ++LSP ++ Q IARGQ+ELM+MV  MPES Y
Sbjct: 22  DDHSDSGVCSPPLWRTSPPKSPAHLHNNYQNLSPVTKAQVIARGQRELMDMVSKMPESCY 81

Query: 114 ELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDN 173
           ELSLKDLVE    N++ ++  D      +    E   R+   KT+S+      R+  V+N
Sbjct: 82  ELSLKDLVE---VNTEEEKVFD------EMPQREKKPRKVVRKTKSDKWVDPIRNGGVNN 141

Query: 174 GGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRV-------SPKP-------PPVDRD 233
            GF LK+ FP+  G   AKKK+N + D+    SS         SP+P          D+D
Sbjct: 142 SGFLLKLVFPVSLG---AKKKTNKKKDNDDDDSSVTSKRSWISSPRPSISDLSMKREDKD 201

Query: 234 WW-------RKRSSVAGGENEGSISGGSMTSSGSSNSTSSERS-NSRNSESQGSCWF 269
           WW       R+  SV    N    SG S +S GSS+ ++S+RS NS   E++G   F
Sbjct: 202 WWKDGLSESRRSQSVVSRIN----SGSSKSSGGSSSRSNSDRSRNSLRDENRGCLSF 242

BLAST of Lsi08G005060 vs. TAIR 10
Match: AT1G76980.1 (BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-21
Identity = 89/228 (39.04%), Postives = 121/228 (53.07%), Query Frame = 0

Query: 54  DSQSESGVCSPTLWASNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSY 113
           D  S+SGVCSP LW ++   SP       ++LSP ++ Q IARGQ+ELM+MV  MPES Y
Sbjct: 22  DDHSDSGVCSPPLWRTSPPKSPAHLHNNYQNLSPVTKAQVIARGQRELMDMVSKMPESCY 81

Query: 114 ELSLKDLVEHHLTNSKRQQDGDATSLSRDDSSSETSFRRDPSKTRSETRALVTRSRSVDN 173
           ELSLKDLVE    N++ ++  D      +    E   R+   KT+S+      R+  V+N
Sbjct: 82  ELSLKDLVE---VNTEEEKVFD------EMPQREKKPRKVVRKTKSDKWVDPIRNGGVNN 141

Query: 174 GGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRV-------SPKP-------PPVDRD 233
            GF LK+ FP+  G   AKKK+N + D+    SS         SP+P          D+D
Sbjct: 142 SGFLLKLVFPVSLG---AKKKTNKKKDNDDDDSSVTSKRSWISSPRPSISDLSMKREDKD 201

Query: 234 WW-------RKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRNS 261
           WW       R+  SV    N    SG S +S GSS+ ++S+R  SRNS
Sbjct: 202 WWKDGLSESRRSQSVVSRIN----SGSSKSSGGSSSRSNSDR--SRNS 231

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B3A74.0e-12789.17uncharacterized protein LOC103485667 OS=Cucumis melo OX=3656 GN=LOC103485667 PE=... [more]
A0A0A0KCW47.0e-12487.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G349820 PE=4 SV=1[more]
A0A5D3DJL83.5e-11588.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1FJY25.4e-10085.60uncharacterized protein LOC111444710 OS=Cucurbita moschata OX=3662 GN=LOC1114447... [more]
A0A6J1K1H62.7e-9985.19uncharacterized protein LOC111489776 OS=Cucurbita maxima OX=3661 GN=LOC111489776... [more]
Match NameE-valueIdentityDescription
XP_008441584.18.2e-12789.17PREDICTED: uncharacterized protein LOC103485667 [Cucumis melo][more]
XP_038885358.12.2e-12487.46uncharacterized protein LOC120075766 [Benincasa hispida][more]
XP_004144253.11.5e-12387.77uncharacterized protein LOC101219576 [Cucumis sativus] >KGN47505.1 hypothetical ... [more]
TYK23785.17.2e-11588.37uncharacterized protein E5676_scaffold1607G001120 [Cucumis melo var. makuwa][more]
KAG6578929.11.1e-9985.60TOM1-like protein 3, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
AT1G21390.11.1e-2339.11embryo defective 2170 [more]
AT1G76980.21.3e-2138.40FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G76980.12.9e-2139.04BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G2139... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..265
NoneNo IPR availablePANTHERPTHR34193:SF1OS11G0199801 PROTEINcoord: 43..276
NoneNo IPR availablePANTHERPTHR34193OS11G0199801 PROTEINcoord: 43..276

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G005060.1Lsi08G005060.1mRNA