Lsi08G003720 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G003720
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	tetrapyrrole-binding protein, chloroplastic
Location	chr08: 10202487 .. 10203272 (-)
RNA-Seq Expression	Lsi08G003720
Synteny	Lsi08G003720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCCCACTCTCTCCCATCTCTCCGCCACTCTCTCCGCCGTCCCCACCACCCTAACCTCTCTCCCACCCCCTTCTCCTCTTCCTCCACTCTGTTTCTCAAACCAACTTCCACCGCCATCAACACCACCACCACCACCACCACCACTGCCGCCGCCGCTTCCTCTCTCTCCGCCGCAGCTGCCAGCTCCTTCTCTCCCTCCGCAGACACCTCCTCCGCCATCTCTTTCGACGAGCTCGACCGCCTTCTCGCCGCCAAAGACTTCCGGCAAGCCGACGAGGAAACCCGGCGGCTTCTAATCGCCCTCGCCGGCGACGGCGCCCAGAAACGAGGGTACGTCTATTTCTCCGAAGTCCAATTCATCGCCTCCGACGATCTGAAAGCCATTGACGATCTGTGGCAGAAACACAGCGATGGGAAATTCGGGTACAGCGTACAGAAACGAATTTTTGAGAAAGTGAACAAAGATTTCACAAAACTGTTTATGAAACTTGGGTGGATGAAGAAGCTGGATACGGAAATGGAGCAGTACAATTACAGAGCATTTCCGACGGAGTTCATTTGGGAGCTGACGGAGGAGACGCCGGAAGGGCATCTGCCATTAACGAATGCTTTGAGAGGGACACAGTTAATGACGAACATTCTGAGCCATCCGGCATTTGAGGAGGACGCCATTGAAGAGAAAGGGGAAGAAAAAGTTGCAGGGGAAGAAAATGGAGTACTGAAAAAGGGATTGAAATCGATTAGTGAGAGGATTTTCAAAAGGGATTATAGCTTCTGA

mRNA sequence

ATGGCAGCTTCCCACTCTCTCCCATCTCTCCGCCACTCTCTCCGCCGTCCCCACCACCCTAACCTCTCTCCCACCCCCTTCTCCTCTTCCTCCACTCTGTTTCTCAAACCAACTTCCACCGCCATCAACACCACCACCACCACCACCACCACTGCCGCCGCCGCTTCCTCTCTCTCCGCCGCAGCTGCCAGCTCCTTCTCTCCCTCCGCAGACACCTCCTCCGCCATCTCTTTCGACGAGCTCGACCGCCTTCTCGCCGCCAAAGACTTCCGGCAAGCCGACGAGGAAACCCGGCGGCTTCTAATCGCCCTCGCCGGCGACGGCGCCCAGAAACGAGGGTACGTCTATTTCTCCGAAGTCCAATTCATCGCCTCCGACGATCTGAAAGCCATTGACGATCTGTGGCAGAAACACAGCGATGGGAAATTCGGGTACAGCGTACAGAAACGAATTTTTGAGAAAGTGAACAAAGATTTCACAAAACTGTTTATGAAACTTGGGTGGATGAAGAAGCTGGATACGGAAATGGAGCAGTACAATTACAGAGCATTTCCGACGGAGTTCATTTGGGAGCTGACGGAGGAGACGCCGGAAGGGCATCTGCCATTAACGAATGCTTTGAGAGGGACACAGTTAATGACGAACATTCTGAGCCATCCGGCATTTGAGGAGGACGCCATTGAAGAGAAAGGGGAAGAAAAAGTTGCAGGGGAAGAAAATGGAGTACTGAAAAAGGGATTGAAATCGATTAGTGAGAGGATTTTCAAAAGGGATTATAGCTTCTGA

Coding sequence (CDS)

ATGGCAGCTTCCCACTCTCTCCCATCTCTCCGCCACTCTCTCCGCCGTCCCCACCACCCTAACCTCTCTCCCACCCCCTTCTCCTCTTCCTCCACTCTGTTTCTCAAACCAACTTCCACCGCCATCAACACCACCACCACCACCACCACCACTGCCGCCGCCGCTTCCTCTCTCTCCGCCGCAGCTGCCAGCTCCTTCTCTCCCTCCGCAGACACCTCCTCCGCCATCTCTTTCGACGAGCTCGACCGCCTTCTCGCCGCCAAAGACTTCCGGCAAGCCGACGAGGAAACCCGGCGGCTTCTAATCGCCCTCGCCGGCGACGGCGCCCAGAAACGAGGGTACGTCTATTTCTCCGAAGTCCAATTCATCGCCTCCGACGATCTGAAAGCCATTGACGATCTGTGGCAGAAACACAGCGATGGGAAATTCGGGTACAGCGTACAGAAACGAATTTTTGAGAAAGTGAACAAAGATTTCACAAAACTGTTTATGAAACTTGGGTGGATGAAGAAGCTGGATACGGAAATGGAGCAGTACAATTACAGAGCATTTCCGACGGAGTTCATTTGGGAGCTGACGGAGGAGACGCCGGAAGGGCATCTGCCATTAACGAATGCTTTGAGAGGGACACAGTTAATGACGAACATTCTGAGCCATCCGGCATTTGAGGAGGACGCCATTGAAGAGAAAGGGGAAGAAAAAGTTGCAGGGGAAGAAAATGGAGTACTGAAAAAGGGATTGAAATCGATTAGTGAGAGGATTTTCAAAAGGGATTATAGCTTCTGA

Protein sequence

MAASHSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSAAAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEVQFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYNYRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAGEENGVLKKGLKSISERIFKRDYSF

Homology

[Close]

BLAST of Lsi08G003720 vs. ExPASy Swiss-Prot
Match: Q9LX31 (Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GUN4 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-54
Identity = 132/266 (49.62%), Postives = 178/266 (66.92%), Query Frame = 0


Query: 5   HSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSAAAAS 64
           HS PS  H     H  NL        ++L LK  ++A   +   + ++ ++S+ + +A S
Sbjct: 12  HSSPSYTH-----HRNNLHCQSHFGPTSLSLKQPTSAATFSLICSASSTSSSTTAVSAVS 71

Query: 65  SFSPSADTS-SAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEVQFI 124
           + + SA T+ +A  FD L+  L  ++FRQADEETRRLLI ++G+ A KRGYV+FSEV+ I
Sbjct: 72  TTNASATTAETATIFDVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTI 131

Query: 125 ASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYNYRA 184
           + +DL+AID+LW KHSDG+FGYSVQ++I+ KV KDFT+ F+K+ WMK LDTE+ QYNYRA
Sbjct: 132 SPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLLDTEVVQYNYRA 191

Query: 185 FPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEK--------V 244
           FP EF WEL +ETP GHLPLTNALRGTQL+  +LSHPAF   A +  GE +        V
Sbjct: 192 FPDEFKWELNDETPLGHLPLTNALRGTQLLKCVLSHPAF-ATADDNSGETEDELNRGVAV 251

Query: 245 AGEENGVLKKGLKSISERIFKRDYSF 262
           A E+ GV         +R+FK +YSF
Sbjct: 252 AKEQAGV------GADKRVFKTNYSF 265

[Close]

BLAST of Lsi08G003720 vs. ExPASy Swiss-Prot
Match: Q1XDT5 (Uncharacterized protein ycf53 OS=Pyropia yezoensis OX=2788 GN=ycf53 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-24
Identity = 60/152 (39.47%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 72  TSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEVQFIASDDLKAI 131
           ++  +++ +L  LL  +D  +AD+ T++ LI LAG  AQ R ++YF++++ I + DL+ I
Sbjct: 93  SAQQMNYKDLQMLLTHRDLLKADQLTQQKLIQLAGVNAQTRNWLYFTDIKKIPAQDLQTI 152

Query: 132 DDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYNYRAFPTEFIWE 191
           D LW  HS GKFG  VQ++I+  V KD+ K + K+GW      E+++   R +P EF W 
Sbjct: 153 DKLWHTHSKGKFGLFVQRQIWLSVGKDWGKFWQKIGW------EVDRIPCR-YPEEFQW- 212

Query: 192 LTEETPEGHLPLTNALRGTQLMTNILSHPAFE 224
                P GHLPL N LRG Q+++ + +H A+E
Sbjct: 213 -NSHGPRGHLPLFNQLRGVQVLSALFTHKAWE 235

[Close]

BLAST of Lsi08G003720 vs. ExPASy Swiss-Prot
Match: P72583 (Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll0558 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-23
Identity = 59/153 (38.56%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 72  TSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEVQFIASDDLKAI 131
           ++  I +  L   L ++DF  ADE TR  L  LAG GA +R ++YF+EV+   + DL  I
Sbjct: 87  SAQGIDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTI 146

Query: 132 DDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYNYRAFPTEFIWE 191
           + LW  HS+G FG+SVQ+R++    K+FTKL+ K+GW            +  +P  F W+
Sbjct: 147 NALWWLHSNGNFGFSVQRRLWLASGKEFTKLWPKIGW-------KSGNVWTRWPKGFTWD 206

Query: 192 LTEETPEGHLPLTNALRGTQLMTNILSHPAFEE 225
           L+   P+GHLPL N LRG ++  ++  HP + +
Sbjct: 207 LS--APQGHLPLLNQLRGVRVAESLYRHPVWSQ 230

[Close]

BLAST of Lsi08G003720 vs. ExPASy Swiss-Prot
Match: P51202 (Uncharacterized protein ycf53 OS=Porphyra purpurea OX=2787 GN=ycf53 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-21
Identity = 55/152 (36.18%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 72  TSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEVQFIASDDLKAI 131
           ++  + + +L  LL   +   AD+ T++ LI LAG   + R ++YF++++ I  +DL+ I
Sbjct: 94  SNKQMDYQDLQILLVQNNLIAADKLTQQKLIKLAGVDEKSRNWLYFTDIKKIPVEDLQTI 153

Query: 132 DDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYNYRAFPTEFIWE 191
           D LW  HS GKFG+ VQ++I+  + K++ + + K+GW      E+ +   R +P EF W 
Sbjct: 154 DQLWNAHSKGKFGFFVQRQIWLALEKNWEQFWYKIGW------EINRVPCR-YPEEFHWN 213

Query: 192 LTEETPEGHLPLTNALRGTQLMTNILSHPAFE 224
            T   P+GHLPL N LRG Q+++ + SH A++
Sbjct: 214 ST--GPKGHLPLCNQLRGVQVLSALFSHKAWD 236

[Close]

BLAST of Lsi08G003720 vs. ExPASy Swiss-Prot
Match: O19887 (Uncharacterized protein ycf53 OS=Cyanidium caldarium OX=2771 GN=ycf53 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-21
Identity = 49/142 (34.51%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 78  FDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEVQFIASDDLKAIDDLWQK 137
           ++ L+ LL+A +F +A++ T+++L+ LAG+ +++R ++YF++V  I    +  ++ LW+ 
Sbjct: 102 YETLESLLSANNFFEANKFTQQILLELAGEQSKQRNWMYFTDVHSINHQSVSDLNHLWEL 161

Query: 138 HSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYNYRAFPTEFIWELTEETP 197
           +S G FG+S+QKRI+  VNK++ K + K+GW+           +  +P EF+W +    P
Sbjct: 162 YSQGNFGFSIQKRIWISVNKNWKKFWKKIGWIN------SNSKWLKYPGEFMWAV--NAP 221

Query: 198 EGHLPLTNALRGTQLMTNILSH 220
            GHLPL N LRG  ++  I  +
Sbjct: 222 PGHLPLFNQLRGVYVLEFIFDY 235

[Close]

BLAST of Lsi08G003720 vs. ExPASy TrEMBL
Match: A0A5A7SPC7 (Tetrapyrrole-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00620 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.2e-119
Identity = 234/261 (89.66%), Postives = 245/261 (93.87%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSA 60
           MAASHSLPSLR SLR PH PNLSPT FSSSSTLFLKP STA  TTTTT    AA SSLSA
Sbjct: 1   MAASHSLPSLRPSLRHPHRPNLSPTSFSSSSTLFLKPASTAAVTTTTT----AATSSLSA 60

Query: 61  AAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEV 120
           AAA SFS S+DTSSAISFDELDRLLAAKDFR+ADEETRRLLIALAGDGA KRGYVYFSEV
Sbjct: 61  AAAGSFSLSSDTSSAISFDELDRLLAAKDFRKADEETRRLLIALAGDGALKRGYVYFSEV 120

Query: 121 QFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN 180
           QFIA++DLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTE+EQYN
Sbjct: 121 QFIAAEDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEIEQYN 180

Query: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAGEEN 240
           YRAFPTEFIWELTEETPEGHLPLTNALRGTQLM+NIL+HPAFEEDAIEEKGEEK+AG+EN
Sbjct: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMSNILNHPAFEEDAIEEKGEEKIAGDEN 240

Query: 241 GVLKKGLKSISERIFKRDYSF 262
           G LKKGLKSI+ER+FKRDYSF
Sbjct: 241 GGLKKGLKSITERLFKRDYSF 257

[Close]

BLAST of Lsi08G003720 vs. ExPASy TrEMBL
Match: A0A1S3BE43 (tetrapyrrole-binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488673 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.2e-119
Identity = 234/261 (89.66%), Postives = 245/261 (93.87%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSA 60
           MAASHSLPSLR SLR PH PNLSPT FSSSSTLFLKP STA  TTTTT    AA SSLSA
Sbjct: 1   MAASHSLPSLRPSLRHPHRPNLSPTSFSSSSTLFLKPASTAAVTTTTT----AATSSLSA 60

Query: 61  AAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEV 120
           AAA SFS S+DTSSAISFDELDRLLAAKDFR+ADEETRRLLIALAGDGA KRGYVYFSEV
Sbjct: 61  AAAGSFSLSSDTSSAISFDELDRLLAAKDFRKADEETRRLLIALAGDGALKRGYVYFSEV 120

Query: 121 QFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN 180
           QFIA++DLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTE+EQYN
Sbjct: 121 QFIAAEDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEIEQYN 180

Query: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAGEEN 240
           YRAFPTEFIWELTEETPEGHLPLTNALRGTQLM+NIL+HPAFEEDAIEEKGEEK+AG+EN
Sbjct: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMSNILNHPAFEEDAIEEKGEEKIAGDEN 240

Query: 241 GVLKKGLKSISERIFKRDYSF 262
           G LKKGLKSI+ER+FKRDYSF
Sbjct: 241 GGLKKGLKSITERLFKRDYSF 257

[Close]

BLAST of Lsi08G003720 vs. ExPASy TrEMBL
Match: A0A0A0KCD2 (GUN4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G042370 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.9e-116
Identity = 230/262 (87.79%), Postives = 244/262 (93.13%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSA 60
           MA SHSLPSLRHSLR PH PNLSPT FSSSSTLFLKPTS+   TTTTTTT  AA SSLSA
Sbjct: 1   MATSHSLPSLRHSLRHPHRPNLSPTSFSSSSTLFLKPTSSTAVTTTTTTT--AATSSLSA 60

Query: 61  AAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEV 120
           AAA SFS S+DTSSAISFDELDRLL AKDFRQADEETRRLLIALAG+GA KRGYVYFSEV
Sbjct: 61  AAAGSFSLSSDTSSAISFDELDRLLGAKDFRQADEETRRLLIALAGEGALKRGYVYFSEV 120

Query: 121 QFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN 180
           QFIA++DLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTE+EQYN
Sbjct: 121 QFIAAEDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEIEQYN 180

Query: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAG-EE 240
           YRAFPTEFIWELTE+TPEGHLPLTNALRGT+LM+NIL+HPAF E+AIEEKGEEK+AG  E
Sbjct: 181 YRAFPTEFIWELTEDTPEGHLPLTNALRGTRLMSNILNHPAFGEEAIEEKGEEKIAGVVE 240

Query: 241 NGVLKKGLKSISERIFKRDYSF 262
           NG LKKGLKSI+ER+FKRDYSF
Sbjct: 241 NGGLKKGLKSITERLFKRDYSF 260

[Close]

BLAST of Lsi08G003720 vs. ExPASy TrEMBL
Match: A0A6J1GMW2 (tetrapyrrole-binding protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455853 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 2.0e-109
Identity = 218/261 (83.52%), Postives = 234/261 (89.66%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSA 60
           MAASHSLPSLRH+L RPH PNLSP PFSSSS L LK TS     T T T   AA SSLSA
Sbjct: 1   MAASHSLPSLRHTLSRPHRPNLSPNPFSSSS-LLLKSTS-----TPTATAAVAATSSLSA 60

Query: 61  AAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEV 120
           AAASSFS S+DTSSA+SFDEL+R LAAK+FRQADEETRRLLIALAGD AQKRGYVYFSEV
Sbjct: 61  AAASSFSLSSDTSSAVSFDELERHLAAKNFRQADEETRRLLIALAGDAAQKRGYVYFSEV 120

Query: 121 QFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN 180
           QF++SD+LKAIDDLWQK+SDGKFGYSVQKR+FEKVN+DFTKLFMKLGWMKKLDTE+EQYN
Sbjct: 121 QFVSSDNLKAIDDLWQKYSDGKFGYSVQKRVFEKVNRDFTKLFMKLGWMKKLDTEIEQYN 180

Query: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAGEEN 240
           YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIE   +E VA +EN
Sbjct: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEGGAQENVAADEN 240

Query: 241 GVLKKGLKSISERIFKRDYSF 262
           G  KKGLK++SERIFKRDYSF
Sbjct: 241 GGFKKGLKTMSERIFKRDYSF 255

[Close]

BLAST of Lsi08G003720 vs. ExPASy TrEMBL
Match: A0A6J1JPI7 (tetrapyrrole-binding protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488677 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.3e-108
Identity = 218/264 (82.58%), Postives = 237/264 (89.77%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPF---SSSSTLFLKPTSTAINTTTTTTTTAAAASS 60
           MAASHSLPSLRH+LRRPH PNLSP PF   SSSS+L L+ TST    T T T   AA SS
Sbjct: 1   MAASHSLPSLRHTLRRPHRPNLSPNPFSSSSSSSSLLLQSTST---PTATATAAIAATSS 60

Query: 61  LSAAAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYF 120
           LSAAAASSFS S+DTSSA+SFDEL+R LAAK+FRQAD+ETRRLLIALAGD AQKRGYVYF
Sbjct: 61  LSAAAASSFSLSSDTSSAVSFDELERHLAAKNFRQADKETRRLLIALAGDAAQKRGYVYF 120

Query: 121 SEVQFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEME 180
           SEVQFI+SD+LKAIDDLWQK+SDGKFGY VQKR+FEKVN+DFTKLFMKLGWMKKLDTE+E
Sbjct: 121 SEVQFISSDNLKAIDDLWQKYSDGKFGYRVQKRVFEKVNRDFTKLFMKLGWMKKLDTEIE 180

Query: 181 QYNYRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAG 240
           QYNYRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILS+PAFEEDAIE   +E VAG
Sbjct: 181 QYNYRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSNPAFEEDAIEGGAQENVAG 240

Query: 241 EENGVLKKGLKSISERIFKRDYSF 262
           +ENG  KKGLK++SERIFKRDYSF
Sbjct: 241 DENGGFKKGLKTMSERIFKRDYSF 261

[Close]

BLAST of Lsi08G003720 vs. NCBI nr
Match: XP_038884158.1 (tetrapyrrole-binding protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 449.1 bits (1154), Expect = 2.6e-122
Identity = 241/261 (92.34%), Postives = 248/261 (95.02%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSA 60
           MAASHSLPSLRHSLRRPHHPNLSPT FSSSSTLFLKPTSTA     TTT TAA ASSLSA
Sbjct: 1   MAASHSLPSLRHSLRRPHHPNLSPTSFSSSSTLFLKPTSTA---APTTTATAATASSLSA 60

Query: 61  AAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEV 120
           +AA SFS SADTSSAISFDELD LLAAKDFRQADEETRRLLIALAG+GAQKRGYVYFSEV
Sbjct: 61  SAAGSFSLSADTSSAISFDELDHLLAAKDFRQADEETRRLLIALAGEGAQKRGYVYFSEV 120

Query: 121 QFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN 180
           QFIA+DDLKAID+LWQK+SDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN
Sbjct: 121 QFIAADDLKAIDNLWQKYSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN 180

Query: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAGEEN 240
           YRAFPTEFIWELTEETPEGHLPLTNALRGTQLM NILSHPAFEEDAIEEKGEEKVAG+EN
Sbjct: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMGNILSHPAFEEDAIEEKGEEKVAGDEN 240

Query: 241 GVLKKGLKSISERIFKRDYSF 262
           G LKKGLKSI+ERIFKRDYSF
Sbjct: 241 GGLKKGLKSITERIFKRDYSF 258

[Close]

BLAST of Lsi08G003720 vs. NCBI nr
Match: XP_008445737.1 (PREDICTED: tetrapyrrole-binding protein, chloroplastic [Cucumis melo] >KAA0033042.1 tetrapyrrole-binding protein [Cucumis melo var. makuwa] >TYK03457.1 tetrapyrrole-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 438.3 bits (1126), Expect = 4.5e-119
Identity = 234/261 (89.66%), Postives = 245/261 (93.87%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSA 60
           MAASHSLPSLR SLR PH PNLSPT FSSSSTLFLKP STA  TTTTT    AA SSLSA
Sbjct: 1   MAASHSLPSLRPSLRHPHRPNLSPTSFSSSSTLFLKPASTAAVTTTTT----AATSSLSA 60

Query: 61  AAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEV 120
           AAA SFS S+DTSSAISFDELDRLLAAKDFR+ADEETRRLLIALAGDGA KRGYVYFSEV
Sbjct: 61  AAAGSFSLSSDTSSAISFDELDRLLAAKDFRKADEETRRLLIALAGDGALKRGYVYFSEV 120

Query: 121 QFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN 180
           QFIA++DLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTE+EQYN
Sbjct: 121 QFIAAEDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEIEQYN 180

Query: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAGEEN 240
           YRAFPTEFIWELTEETPEGHLPLTNALRGTQLM+NIL+HPAFEEDAIEEKGEEK+AG+EN
Sbjct: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMSNILNHPAFEEDAIEEKGEEKIAGDEN 240

Query: 241 GVLKKGLKSISERIFKRDYSF 262
           G LKKGLKSI+ER+FKRDYSF
Sbjct: 241 GGLKKGLKSITERLFKRDYSF 257

[Close]

BLAST of Lsi08G003720 vs. NCBI nr
Match: XP_004140886.1 (tetrapyrrole-binding protein, chloroplastic [Cucumis sativus] >KGN46002.1 hypothetical protein Csa_004798 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 6.1e-116
Identity = 230/262 (87.79%), Postives = 244/262 (93.13%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSA 60
           MA SHSLPSLRHSLR PH PNLSPT FSSSSTLFLKPTS+   TTTTTTT  AA SSLSA
Sbjct: 1   MATSHSLPSLRHSLRHPHRPNLSPTSFSSSSTLFLKPTSSTAVTTTTTTT--AATSSLSA 60

Query: 61  AAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEV 120
           AAA SFS S+DTSSAISFDELDRLL AKDFRQADEETRRLLIALAG+GA KRGYVYFSEV
Sbjct: 61  AAAGSFSLSSDTSSAISFDELDRLLGAKDFRQADEETRRLLIALAGEGALKRGYVYFSEV 120

Query: 121 QFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN 180
           QFIA++DLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTE+EQYN
Sbjct: 121 QFIAAEDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEIEQYN 180

Query: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAG-EE 240
           YRAFPTEFIWELTE+TPEGHLPLTNALRGT+LM+NIL+HPAF E+AIEEKGEEK+AG  E
Sbjct: 181 YRAFPTEFIWELTEDTPEGHLPLTNALRGTRLMSNILNHPAFGEEAIEEKGEEKIAGVVE 240

Query: 241 NGVLKKGLKSISERIFKRDYSF 262
           NG LKKGLKSI+ER+FKRDYSF
Sbjct: 241 NGGLKKGLKSITERLFKRDYSF 260

[Close]

BLAST of Lsi08G003720 vs. NCBI nr
Match: XP_022953248.1 (tetrapyrrole-binding protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 405.2 bits (1040), Expect = 4.2e-109
Identity = 218/261 (83.52%), Postives = 234/261 (89.66%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSA 60
           MAASHSLPSLRH+L RPH PNLSP PFSSSS L LK TS     T T T   AA SSLSA
Sbjct: 1   MAASHSLPSLRHTLSRPHRPNLSPNPFSSSS-LLLKSTS-----TPTATAAVAATSSLSA 60

Query: 61  AAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEV 120
           AAASSFS S+DTSSA+SFDEL+R LAAK+FRQADEETRRLLIALAGD AQKRGYVYFSEV
Sbjct: 61  AAASSFSLSSDTSSAVSFDELERHLAAKNFRQADEETRRLLIALAGDAAQKRGYVYFSEV 120

Query: 121 QFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYN 180
           QF++SD+LKAIDDLWQK+SDGKFGYSVQKR+FEKVN+DFTKLFMKLGWMKKLDTE+EQYN
Sbjct: 121 QFVSSDNLKAIDDLWQKYSDGKFGYSVQKRVFEKVNRDFTKLFMKLGWMKKLDTEIEQYN 180

Query: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAGEEN 240
           YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIE   +E VA +EN
Sbjct: 181 YRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEGGAQENVAADEN 240

Query: 241 GVLKKGLKSISERIFKRDYSF 262
           G  KKGLK++SERIFKRDYSF
Sbjct: 241 GGFKKGLKTMSERIFKRDYSF 255

[Close]

BLAST of Lsi08G003720 vs. NCBI nr
Match: XP_022992337.1 (tetrapyrrole-binding protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 402.5 bits (1033), Expect = 2.7e-108
Identity = 218/264 (82.58%), Postives = 237/264 (89.77%), Query Frame = 0


Query: 1   MAASHSLPSLRHSLRRPHHPNLSPTPF---SSSSTLFLKPTSTAINTTTTTTTTAAAASS 60
           MAASHSLPSLRH+LRRPH PNLSP PF   SSSS+L L+ TST    T T T   AA SS
Sbjct: 1   MAASHSLPSLRHTLRRPHRPNLSPNPFSSSSSSSSLLLQSTST---PTATATAAIAATSS 60

Query: 61  LSAAAASSFSPSADTSSAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYF 120
           LSAAAASSFS S+DTSSA+SFDEL+R LAAK+FRQAD+ETRRLLIALAGD AQKRGYVYF
Sbjct: 61  LSAAAASSFSLSSDTSSAVSFDELERHLAAKNFRQADKETRRLLIALAGDAAQKRGYVYF 120

Query: 121 SEVQFIASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEME 180
           SEVQFI+SD+LKAIDDLWQK+SDGKFGY VQKR+FEKVN+DFTKLFMKLGWMKKLDTE+E
Sbjct: 121 SEVQFISSDNLKAIDDLWQKYSDGKFGYRVQKRVFEKVNRDFTKLFMKLGWMKKLDTEIE 180

Query: 181 QYNYRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEKVAG 240
           QYNYRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILS+PAFEEDAIE   +E VAG
Sbjct: 181 QYNYRAFPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSNPAFEEDAIEGGAQENVAG 240

Query: 241 EENGVLKKGLKSISERIFKRDYSF 262
           +ENG  KKGLK++SERIFKRDYSF
Sbjct: 241 DENGGFKKGLKTMSERIFKRDYSF 261

[Close]

BLAST of Lsi08G003720 vs. TAIR 10
Match: AT3G59400.1 (enzyme binding;tetrapyrrole binding )

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-55
Identity = 132/266 (49.62%), Postives = 178/266 (66.92%), Query Frame = 0


Query: 5   HSLPSLRHSLRRPHHPNLSPTPFSSSSTLFLKPTSTAINTTTTTTTTAAAASSLSAAAAS 64
           HS PS  H     H  NL        ++L LK  ++A   +   + ++ ++S+ + +A S
Sbjct: 12  HSSPSYTH-----HRNNLHCQSHFGPTSLSLKQPTSAATFSLICSASSTSSSTTAVSAVS 71

Query: 65  SFSPSADTS-SAISFDELDRLLAAKDFRQADEETRRLLIALAGDGAQKRGYVYFSEVQFI 124
           + + SA T+ +A  FD L+  L  ++FRQADEETRRLLI ++G+ A KRGYV+FSEV+ I
Sbjct: 72  TTNASATTAETATIFDVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTI 131

Query: 125 ASDDLKAIDDLWQKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEMEQYNYRA 184
           + +DL+AID+LW KHSDG+FGYSVQ++I+ KV KDFT+ F+K+ WMK LDTE+ QYNYRA
Sbjct: 132 SPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLLDTEVVQYNYRA 191

Query: 185 FPTEFIWELTEETPEGHLPLTNALRGTQLMTNILSHPAFEEDAIEEKGEEK--------V 244
           FP EF WEL +ETP GHLPLTNALRGTQL+  +LSHPAF   A +  GE +        V
Sbjct: 192 FPDEFKWELNDETPLGHLPLTNALRGTQLLKCVLSHPAF-ATADDNSGETEDELNRGVAV 251

Query: 245 AGEENGVLKKGLKSISERIFKRDYSF 262
           A E+ GV         +R+FK +YSF
Sbjct: 252 AKEQAGV------GADKRVFKTNYSF 265

The following BLAST results are available for this feature:

BLAST of Lsi08G003720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX31	1.8e-54	49.62	Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=G...	[more]
Q1XDT5	2.0e-24	39.47	Uncharacterized protein ycf53 OS=Pyropia yezoensis OX=2788 GN=ycf53 PE=3 SV=1	[more]
P72583	1.7e-23	38.56	Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P51202	2.6e-21	36.18	Uncharacterized protein ycf53 OS=Porphyra purpurea OX=2787 GN=ycf53 PE=3 SV=1	[more]
O19887	3.5e-21	34.51	Uncharacterized protein ycf53 OS=Cyanidium caldarium OX=2771 GN=ycf53 PE=3 SV=1	[more]

BLAST of Lsi08G003720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SPC7	2.2e-119	89.66	Tetrapyrrole-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BE43	2.2e-119	89.66	tetrapyrrole-binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488...	[more]
A0A0A0KCD2	2.9e-116	87.79	GUN4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G042370 PE=4 S...	[more]
A0A6J1GMW2	2.0e-109	83.52	tetrapyrrole-binding protein, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JPI7	1.3e-108	82.58	tetrapyrrole-binding protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Lsi08G003720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884158.1	2.6e-122	92.34	tetrapyrrole-binding protein, chloroplastic [Benincasa hispida]	[more]
XP_008445737.1	4.5e-119	89.66	PREDICTED: tetrapyrrole-binding protein, chloroplastic [Cucumis melo] >KAA003304...	[more]
XP_004140886.1	6.1e-116	87.79	tetrapyrrole-binding protein, chloroplastic [Cucumis sativus] >KGN46002.1 hypoth...	[more]
XP_022953248.1	4.2e-109	83.52	tetrapyrrole-binding protein, chloroplastic-like [Cucurbita moschata]	[more]
XP_022992337.1	2.7e-108	82.58	tetrapyrrole-binding protein, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Lsi08G003720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59400.1	1.3e-55	49.62	enzyme binding;tetrapyrrole binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008629	GUN4-like	PFAM	PF05419	GUN4	coord: 73..219 e-value: 2.9E-44 score: 150.6
IPR008629	GUN4-like	PANTHER	PTHR34800	TETRAPYRROLE-BINDING PROTEIN, CHLOROPLASTIC	coord: 4..261
IPR008629	GUN4-like	CDD	cd16383	GUN4	coord: 76..213 e-value: 7.71958E-39 score: 130.743
None	No IPR available	GENE3D	1.25.40.620		coord: 24..139 e-value: 4.4E-20 score: 74.6
None	No IPR available	GENE3D	1.10.10.1770		coord: 140..227 e-value: 3.5E-20 score: 74.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
IPR037215	GUN4-like superfamily	SUPERFAMILY	140869	GUN4-like	coord: 74..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G003720.1	Lsi08G003720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010019	chloroplast-nucleus signaling pathway
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0046906	tetrapyrrole binding