Lsi08G002250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G002250
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRrna intron-encoded homing endonuclease
Locationchr08: 5119689 .. 5120178 (+)
RNA-Seq ExpressionLsi08G002250
SyntenyLsi08G002250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

mRNA sequence

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Coding sequence (CDS)

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Protein sequence

MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII
Homology
[Close]
BLAST of Lsi08G002250 vs. ExPASy TrEMBL
Match: A0A5C7H450 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024292 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.5e-48
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGSRRRGRFAA DVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 99

[Close]
BLAST of Lsi08G002250 vs. ExPASy TrEMBL
Match: A0A2P5W8Y1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33147 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYTEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGS RRGRFAARDVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSWRRGRFAARDVARSPLNLII 99

[Close]
BLAST of Lsi08G002250 vs. ExPASy TrEMBL
Match: A0A6A5LDC5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00012867 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRRGRFAA DV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRGRFAAGDVVRSPLNLII 99

[Close]
BLAST of Lsi08G002250 vs. ExPASy TrEMBL
Match: A0A0R0GQW8 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G012700 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-45
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLL SY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRR RFAARDV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRERFAARDVVRSPLNLII 99

[Close]
BLAST of Lsi08G002250 vs. ExPASy TrEMBL
Match: A0A4U5PNX9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 98/117 (83.76%), Postives = 98/117 (83.76%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYA------------------EIIAIVGLQR 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYA                  EIIAIVGLQR
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMAFQAKEIIAIVGLQR 60

Query: 61  GIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           GIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAA DVARSPLNLII
Sbjct: 61  GIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAAGDVARSPLNLII 117

[Close]
BLAST of Lsi08G002250 vs. NCBI nr
Match: KAG8365712.1 (hypothetical protein BUALT_Bualt17G0000400 [Buddleja alternifolia] >KAG8375834.1 hypothetical protein BUALT_Bualt09G0000200 [Buddleja alternifolia] >KAG8375839.1 hypothetical protein BUALT_Bualt09G0000800 [Buddleja alternifolia])

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 99

[Close]
BLAST of Lsi08G002250 vs. NCBI nr
Match: TXG51768.1 (hypothetical protein EZV62_024292 [Acer yangbiense])

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGSRRRGRFAA DVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 99

[Close]
BLAST of Lsi08G002250 vs. NCBI nr
Match: PPR87549.1 (hypothetical protein GOBAR_AA33147 [Gossypium barbadense])

HSP 1 Score: 198.0 bits (502), Expect = 3.9e-47
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYTEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGS RRGRFAARDVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSWRRGRFAARDVARSPLNLII 99

[Close]
BLAST of Lsi08G002250 vs. NCBI nr
Match: TKY45627.1 (hypothetical protein E2542_SST30377 [Spatholobus suberectus] >TKY68243.1 hypothetical protein E2542_SST04478 [Spatholobus suberectus])

HSP 1 Score: 196.8 bits (499), Expect = 8.7e-47
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLL SYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLNSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRRGRFAARDV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRGRFAARDVVRSPLNLII 99

[Close]
BLAST of Lsi08G002250 vs. NCBI nr
Match: KAF1854983.1 (hypothetical protein Lal_00045103 [Lupinus albus] >KAF1854985.1 hypothetical protein Lal_00045105 [Lupinus albus] >KAF1855099.1 hypothetical protein Lal_00045011 [Lupinus albus] >KAF1855100.1 hypothetical protein Lal_00045012 [Lupinus albus] >KAF1855144.1 hypothetical protein Lal_00046614 [Lupinus albus])

HSP 1 Score: 194.5 bits (493), Expect = 4.3e-46
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRRGRFAA DV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRGRFAAGDVVRSPLNLII 99

The following BLAST results are available for this feature:
BLAST of Lsi08G002250 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G002250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5C7H4506.5e-4898.99Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024292 PE=4 SV=1[more]
A0A2P5W8Y11.9e-4797.98Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33147 PE=4 SV... [more]
A0A6A5LDC52.1e-4695.96Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00012867 PE=4 SV=1[more]
A0A0R0GQW81.0e-4594.95Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G012700 PE=4 SV=1[more]
A0A4U5PNX91.1e-4483.76Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1[more]
BLAST of Lsi08G002250 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8365712.11.6e-48100.00hypothetical protein BUALT_Bualt17G0000400 [Buddleja alternifolia] >KAG8375834.1... [more]
TXG51768.11.3e-4798.99hypothetical protein EZV62_024292 [Acer yangbiense][more]
PPR87549.13.9e-4797.98hypothetical protein GOBAR_AA33147 [Gossypium barbadense][more]
TKY45627.18.7e-4796.97hypothetical protein E2542_SST30377 [Spatholobus suberectus] >TKY68243.1 hypothe... [more]
KAF1854983.14.3e-4695.96hypothetical protein Lal_00045103 [Lupinus albus] >KAF1854985.1 hypothetical pro... [more]
BLAST of Lsi08G002250 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G002250.1Lsi08G002250.1mRNA