Lsi08G002150 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G002150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr08: 4857164 .. 4857463 (-)
RNA-Seq Expression	Lsi08G002150
Synteny	Lsi08G002150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAAACAACAGACAAAAGAAAGCTCACTCATCTTTTTCAATCTTTAGCTTTTTTAAGTTCAGAAGAGATAGAAAAGGAGACCATTGTGACCACAGCAGCTCTTGGCCGGACGAGATGCTGAGATCGGGCAAGGTGTGGCCGAGTGATGAGGATAAAGCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCCGAACGCCAAACTGTGACCATACCTCCAAATGGAACAAAACTCAATGTCTAA

mRNA sequence

ATGGGAGGAAACAACAGACAAAAGAAAGCTCACTCATCTTTTTCAATCTTTAGCTTTTTTAAGTTCAGAAGAGATAGAAAAGGAGACCATTGTGACCACAGCAGCTCTTGGCCGGACGAGATGCTGAGATCGGGCAAGGTGTGGCCGAGTGATGAGGATAAAGCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCCGAACGCCAAACTGTGACCATACCTCCAAATGGAACAAAACTCAATGTCTAA

Coding sequence (CDS)

ATGGGAGGAAACAACAGACAAAAGAAAGCTCACTCATCTTTTTCAATCTTTAGCTTTTTTAAGTTCAGAAGAGATAGAAAAGGAGACCATTGTGACCACAGCAGCTCTTGGCCGGACGAGATGCTGAGATCGGGCAAGGTGTGGCCGAGTGATGAGGATAAAGCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCCGAACGCCAAACTGTGACCATACCTCCAAATGGAACAAAACTCAATGTCTAA

Protein sequence

MGGNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLNV

Homology

[Close]

BLAST of Lsi08G002150 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 88/99 (88.89%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MGGNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVA 60
           MGGNNRQKKAH+SFSIFSFFK RR RKGDHC+HS S  DEM RSGKVWPSDEDKAHHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVTI PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Lsi08G002150 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.3e-43
Identity = 87/99 (87.88%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MGGNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVA 60
           MGGNNRQKK+HSSFSIFSFFK RR RKGD+C+HS S  DEM RSGKVWPSDEDKAHHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQT+TI PNGTK NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Lsi08G002150 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.1e-42
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 3   GNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVAEP 62
           G NRQKK+HSSFSIFSFFK +R RKGDH DH  +WPDEM RS KVWPSDEDKAHHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVTI PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Lsi08G002150 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.5e-41
Identity = 84/97 (86.60%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 3   GNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVAEP 62
           G NRQKK+HSSFSIFSFFK RR RKGDH DH  +W DEM RS KVWPSDEDKAHHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVTI PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Lsi08G002150 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.3e-35
Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 3  GNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVAEP 62
          G ++ KK+HSSFS FSF K +  RKGDH DH  SW DE  RSGKVWPSDEDKAHHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTIPPN 94
          GIDRKAKDYIDRIYRNRVFESERQTVTIP N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of Lsi08G002150 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 7.6e-43
Identity = 88/99 (88.89%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MGGNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVA 60
           MGGNNRQKKAH+SFSIFSFFK RR RKGDHC+HS S  DEM RSGKVWPSDEDKAHHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVTI PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Lsi08G002150 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 87/99 (87.88%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MGGNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVA 60
           MGGNNRQKK+HSSFSIFSFFK RR RKGD+C+HS S  DEM RSGKVWPSDEDKAHHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQT+TI PNGTK NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Lsi08G002150 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 1.9e-41
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 3   GNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVAEP 62
           G NRQKK+HSSFSIFSFFK +R RKGDH DH  +WPDEM RS KVWPSDEDKAHHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVTI PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Lsi08G002150 vs. NCBI nr
Match: KAG6592306.1 (hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.9 bits (442), Expect = 3.5e-40
Identity = 83/98 (84.69%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MGGNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVA 60
          MGGNNR KKAHSSFSIF+FFK ++ RK DHCDHSS W DEM RSGKVWPSDEDK H WVA
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCW-DEMPRSGKVWPSDEDKTHRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLN 99
          EPGIDRKAKDYIDRIYRNRVFESERQTVT+P NG KLN
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 97

[Close]

BLAST of Lsi08G002150 vs. NCBI nr
Match: KAG6592316.1 (hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.2 bits (435), Expect = 2.3e-39
Identity = 82/99 (82.83%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1   MGGNNRQKKAHSSFSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHWVA 60
           MGGNNR KKAHSSFSIF+FFKFRR RK DHCDHS  W DEM RS KVWPSDEDK H WVA
Sbjct: 1   MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCW-DEMPRSNKVWPSDEDKMHRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTIPPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRV ESERQTVT+P +GTKL++
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL 98

[Close]

BLAST of Lsi08G002150 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-13
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MGGNNRQKKAHSS--FSIFSFFKFRRDRKGDHCDHSSSWPDEMLRSGKVWPSDEDKAHHW 60
          MGG NR   +HSS  FS+FSFFK RR  +    +   SW D+   + K   SDEDK  +W
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYW 60

Query: 61 VAEPGIDRKAKDYIDRIYRNRVFESERQTVT 90
          VAEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Lsi08G002150 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-10
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 26 RKGDH--CDHSSSWPDEMLRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFES 85
          R+  H   +  +SW D+++ + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ES
Sbjct: 4  RRSSHHRVEADASW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSES 63

Query: 86 ERQTVTIPP 93
          ERQ  T+PP
Sbjct: 64 ERQ--TLPP 68

The following BLAST results are available for this feature:

BLAST of Lsi08G002150 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G002150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAK6	3.7e-43	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A5A7SWT9	6.3e-43	87.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K7Y2	9.1e-42	85.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	4.5e-41	86.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8V3	6.3e-35	80.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of Lsi08G002150 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45869.1	7.6e-43	88.89	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KAA0035003.1	1.3e-42	87.88	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45870.1	1.9e-41	85.57	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6592306.1	3.5e-40	84.69	hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592316.1	2.3e-39	82.83	hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi08G002150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	2.3e-13	50.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	2.4e-10	49.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..90
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G002150.1	Lsi08G002150.1	mRNA