Lsi08G001850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G001850
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr08: 3972167 .. 3983781 (+)
RNA-Seq ExpressionLsi08G001850
SyntenyLsi08G001850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGGTTATTGTTCTACTATAGGTTCATCTAGTTGATTGGGTTGGGAAGTAATTAACTAAAGAAAGTGCCAAAACGCTTTACATGTTGCTACTTGAATTTTAATTTGGACTCGATTTTCTCTTCTACATACCTAGCTCATTCAAATTCATCAAAGACTACATCTCTACTAATTAGAATTCTAGATGAATTAGGTTCTAAGCAACATATTATTGCGTTGATATTGGCTATATTTTTTCTTACAGATAATGATGTTGGCAATTATGTCCTACATCTTGTTTTATGTATTGTCAAGCATGATGTTTCACCATGTGTAGATTGGAAGTATTTTTCTTGTTTAAGTTAGGATTGTCGTTTTTTCTAGTTCTTTTTATTTTCTGGTGGCTTGATAGCATCGAAAATGTGCTATCATGTTCAGTTTAATTTAAGATCATTCATTGGTTTTATATGTTTATTTAGTGATTGTTACAGGTCTCGGACATCAAAGAGGTAGAATCGAGCGTTAGGATCAAAATGAAGCTACAACGAACAAAAACAGAGCTCAAATGCATTAACCGAGGAAAGCATAGGCAAAAGTACGAAAATACCCTTGGAGGCCCAACACCACAACGGAATTCCAATAGCCTCAAATGCATTGAGCGCCGCGACACTACGTAGGTTGACGGATGCACGCGCGATGAAACACTCTAGGCCTAGGATTCAGAATCCGGATTCAGCAACTGATGGCCCCAACATTCGTCTACATCCTGACAACATCATCCTTACTTGACTTGAATACTTCTAAGAGTGAAGACTATCCCCACAAACCAACACGAGTCATTTCAGCATGCTTTATCCTCACTCACATGCTTCCTAAGAAAATTTCCAAGAGGTCACCCGACATAGAAGTGCTCAAAGCTAATCACATTTAACTTTGAAGTTTTTATGATTGAGTGGTCTAGCGGAATTCGTTGCCTAATTTCGGACCAAATTTTTTTTTAAATTATTTCTACCTAAATGTGTATCAATGGTAGCACCGGTCAAACATAGGGAACTGTTAAATTTCTCTATTAAATGGTTTACAGTTCGAGGTAACCACGGGGGGTTGTAATTAGTTTGTTGATTATTGTAAGAAAAATAATCTGCATAAAGTAAATTGCAGATTAAATCCAATGATTAAAAACATAGCCTAGACATTCAAGTTAATTCCCCAATTTTGCAACTTGATCATAGGTTCATCAGATAATTCCTATATTATCTAACTTTAACTGACTCACCTAAAAGTGCTACGTGGGAGTCCTAATTATCGAATTAACCAATTTAATTAGATGAAACACATCCTAACTAGTTGGCTAACTGCATTAAGATCAAGGAATCCACCAAGATGAATTTCTAATAGGAAACGCCTAATTAGTCATTTAATATGATTCTTCCCTAGGTCAATTAATCAGTGTTCGTTGATCTCAATTCATAACTTACAAGCTAATCTAATCTGTTGCTACACTGAATTAACATGTAATTAATTAAAATTAAATCTTAGCTATTGATCATAAATCATCAAGCAGAACTACAATCAAAATCATTCATAACCAGAGAAGGAATCAAAAGGTAATACAAAAAAATTGATGTAAAATGATCTAAACGTCACAAGTGTGCAAAACGAGGAAAACTACTCTATGCTTAGACTAGAAAATGTTACCTTAGCCTATAATGGGCATCATGGACATCAAAGGATTGTCCTCATAGCCGAAGTTCATAACTTTAACGATCACCTCTGACGGCCAACTCCAACAACCACCGCCTGCACCCAACTACGGCAACTTCCAACCACCCCTATTGACGACCAACTTTGGCGACCACCTCCGACAGCCAACTCCAGCGACATCCAATCACCACTGCTGAGAGCCAACTCTGGCAACCTCCAACGGTGGCCATTCCACCAACTCCGACGACCATTATTTTAAATTATGACTACTACAAATTTGAAGTTTATTGACACATCCTCTCTTTTAAATTTTGACTACTACTCAAAATCCTCTCTTTGCTACAGTGTTTACTATTTTTTGCTCATCCTCTCTTTTTTTTCTTTTCTACAGTGTTTACTATTTTCTACCCAAACAAAACTATTTTACACCCTAATCACAAATTATTATAATTTAGACCATAATAGTCTGCTTCCCAAACACAAAATATTATAACTCATTGACTATTATAACCCACTGACTATAATAACCAACTCAGCATCCCAAACGCCCCCTAAATATTTATATTTAAGTTAACGCACAAAATTGTCAAGAAAAACACCTTGATTGACAGAAAAGTACGTAAGTTTCATCAGAACGTTGAATTTCTGGTTTTTTTATTAGTTCATAGTATTTTATAGTCATTCTTTATAGTAATTGAACATTCATAAGATCACTTTTATCATGTAAGAAATCGAATAATTTGTATGTAAAAATAAACTTTTAAGAAAAAATTGTCAGACACATAAGTAGTTTATATTTTAAAAAGTTTTTATCAAAAATGTTAAAATAAAAATGACTTAACTAGAAACGTCACCTGCACAAATTTGTAAAATGATTGCTTAAATTAAAAAAAAATGAAATGCATGATCCAAAAGTAAACTCTAAACCTCATTTCCCAAAACTCCCAACAATATATATGTATTTAAAAAATAATAAAATAAAGTGCAATCTATAGTTTATTTAAAAAATATGAATAAAAAAATTTTCAAAAAAAAAACAATCATCATAAAAACAGATTATTTATGTAAAAAAAAAAATTACATCAGATACGCCTGACATATGAACTCAGCACCCCAAACACCCAAAATACAGACATATGAACTCCACAGACATATAAACTTCACAGACATCATATCTCTAAACTTCATATCTCAACTCAGCACCCTAAACAGCCCCTCAGGATTAAAATCGAGTCACATATGATCATCCTATGAAATGTCAATCTCTTCAATTAACGACGTTATAAAAAGAGACGAAACATTTCGCGGTTCAGTCTTATACAAACTCTTTGTGTAGGATACCCTCACTCGCATGTCTCTACATGAACGATTAGGATCAAATTGTTTGTAACACTTTACAACTTTTGTAACAATTACAAAGTGGGTCGTATCCGTAGTGTCACAGGATCAGACACCCAACCTTATCCATATACTACAGACCATGTAGTTTATTACTTAAACATGATGCACATGTATTGTTAAGTTAGTTACTAGTTGTTGGTTGATCTCAACTTCATTTCTGACCTCTCTTTCTTCCTATAAATAGGCCTCACTTAAGTTTTTTTATATTATTTTTTGTACTGTGATATAGAGAGATAAGAGTGTATCTTGTGTCTGTAGGCCTTTTGTTAAATTCATTCAAGAATAAAGATAAAGTTTTCTTTGATCAGTGGATGTAAGCCTTGTGCTGAATCACTTTAATCTCTTGGTGTTTTTTTCTTTCTTCCTCTTATCTTCTCTTATTTTCATCTCTGCTCTTAAGTTTTACTTGGTTGTTCTTATTGTTGGGCAAAGTTTCTATCTTCATAATATTTTTATCAAGCATGATTTAGTTTCCAGCTTGAGGTCTTTTTTATTACAGTGGTATCAGAGCCCAACCACGACCAAGAAACTAATTCTTGATTTAGTCAAGAATGACTGTTGCGAGGTTTGATATAGACAAGTTTGATGGTAAGTCAGACTTTGGGTTATGGAAGGCCAAGATCAAAGCCATCTTAGGCCAGCAAAAAGCTTTGAAAGCTTTTGAAGACCCAAACAAACTTTCCGAGAGCATCACAGCAGATGAAAGAGAAACTTTGGAATCTATAGCATATGTGACTCTAATTCTAAATCTCACTGACAATGTCCTTAGACAGGTTATTGAAGAAGAGTCATCTTTTAAGATTTGGACCAAGCTAAATGAGCTTTATGTGTCAAAGGACTTATCAAATAAAATGTACATTCGAGAAAAATTCTTTACCTTCAAGATGGATCTTTCTAAAGGAGTTTCTGAAAATCTTGATGATTTTAAAAGAATCACTACCGAATTCAAGAATCTTGGAGAGAAACTTGGAGATAAAAATGAGTCTTTCATTCTCCTGAATTCATTACTAGAAAGCTATAAAGATGTCAAGACAGCCTTGAAATATAGCAGAAATTCTATCACAGTAAGTGCAATCATCTCAGCCATAAAGACTAAAGAAATGGAGCTTCAGTCTTCAACTAAAGATACTCAGAATGCAGAAGGTCTTTTTGTCAAAGGCAAATATAAATCCAAGAACTAACAGACTGAAGAGAAGGGGAAGAATAAACCAAAATGTAATTACTGTCACAAGGAAGACCATTGGAAGAAAGATTGTTGGTCTCTTAACAGAAAGCAAAACAAGAAAAACAAGAATCCAAAACAAAGTGAACCATCACTTCCAGCTACTGAAAGCTCTTTCTCGTTCTCTGATGCTCTAACCATAACAGAAAGAGATGAAGAAAGTTCAAGATCACAAACTAGTGCAGATTGGGTTTTGGATTCTGGTTGTTTCTACCACATGACACTAGATAAAGAATGGTTCTACACTTATAAAAGCTGGGATGGTGGATTAGTATTCATGGGGAATCATGATTCATGTGAAATAGTAGGAATTGGATCAGTATCCTTACAACTTCAAGATGGCACTGCTACTCTTTTGAGAAATGTAAGACATGTACCAAACCTTAAAAGAAATCTTATCTCCTTAGATATGCTTGACTCAATAGACTGCCAATACAAGGATCAAGAAGGAAAGCTTCATGTTTTAAACGACTCAAAAATTGTTCTAACAGGAGAAAAGAGGAATGGTGTGTATGTCATTAAAAATGTACACAAATCTCAAACAGCTTTAACTATCACAAACAGCAAGATGACCATAGGAGACCTCTGGCACAAACGACTATCACATATCAGTTCTAAAGGCCTGGAGGCCCTCTCCAAACAAGGTATTCTACCCAATGGAATAGCAGAACAGATGAAGTTTTGTGAGTTTTGCATAATTGGTAAGGCCAAAAGACAGAGTTTTCAGAGGTCTGAACTCAAATCAACAGACATTCTATCTTATGTGCACTTGGATCTTTGGGGACCTGCTCAAACTCCCTCACTCAGTAATTCAAGGCTTTACTGATGATTATTCAAGGAAGAGCTGGATTTATATTTTGAAAATCAAAGACCAAGTGTTTGAAAAATTCAAAGAATGGAAAACATGTTGAGAAACAAACTTCAAAAACTATTAAATGTCTTAGAACTGATAATGGTCTTGAATTTTGCAACAATGAGTTTGACCAATTTTGCAAAAGTGAAGGAATAGTTAGGCATCGTACTGTCAGGTACACTCCTCAGCAAAACGGTATAGCAAAGAGGCTAAACAGGACTATAATGGAAAGAGTAAGGTGTCAGCTCTCAGACGCAATGCTCCCTGAAAAGTTATGGGCAGAGGCAATCTCTTACACTGTTCATACTCTAAACAGGTGCCCTCATCACTCTTTAGGCCTTCTAACACCTGAAGAGAAATGGACTGGTAAGACTCCAAAACTGGATCACTTGAAGGTTTTTGGTAGTGTAGCCTATGTTCATCAAAATCATGGAAAGCTTAAGCCTAGAGCCGTGAAATGTATGTTTATTGGCTTCACCAAAGGAGTTAAAGGATACAGACTCTGGCATCCTGTTGAACAAAAATGCATCAATAGTAGAGATGTGACATTTAGAGAAGAGGAGATGTTCATGTCTCAAGAAGATAGTGTAGGCTCAAGTTGAGGTGGAATACATTACAGAGCCAAGCACTAGCAGACTTGAGCATGACACTACTTTTTCTGATCTACCTGAGTCAGTGGTAGAATAGGATTCTTACACGGACTTGCCTAACCTATAGGACTATTCTGTTGCAAGGGACAGACAAAGAAGACAAATAAAATCCCCTGCAAGGTATGTTGATTTTGTTTCTTGTGTTTTAAATGCAGAAGCTTATGTGAATAATTCAGAGCCCTCAAACTTCAATCAAGCTGTAAGTGGACCTAATGCTAGAGAATGGATTGCTGCTATGAATGAAGAAATGGATTCTTTGTTAAAAAATGAGACCTGGATTCTTCAACCTCTTCCCAAAGGTTACAAACCCATAGCTTCCAAGTGGATCTACAAAATAAAGGAGGGGGTGACTAACAACCAACCACCTAGATACAAAGCTAGACTTGTGGCTAAGGGGTTCACTCAAAAGGAAGGTATAGACTATAATGAGATATTCTCTCCTGTAGTAAAGCAAACCTCAATTAGATTGTTGTTTTCTCTAGTAGTTCAGAATGATTTGGAGCTAGACCAGCTGGATGTGAAGACTGCCTTCTTACATGGGCATTTAAATGAAACCATATATATGGTGCAGCCTCAAAGGTATGCTCAAAAGGGAAGTGAAGACCTTGTTTGTCTTCTTAAAAGGTCTATATATGGTCTTAAGCAGTCTCCTCGTTGCTGGTACCAAAGATTTGATGATTATGTTTCAACGATTGGATTCACAAGAAGCTCTTTTCACAGCTGTGTTTACATAAACACTAACACCTATGATGAGAGAGTGTACTTGTTACTCTATGTAGATGACATGCTCCTTGCAGTAAAATCAAAAGAAGTCATAAAGAAAGTGAAAATGTTACTCAAGAGAGAATTTGAGGTTAAAGATATGGGTGATGCCAAGAAAATTCTTGGCATTGGAATCACTAGAGATAGAAAGTCTTCATCTCTAACCATAAGTCAGAGCCATTATTGTGATAAAATACTTCATAGATTCAACATGAAGGAAGCAAAACAAGTTTCAGTTCCTCTAGCTCAACACTTTAAGCTCTCATCAGGTAACTGTTCGAAGGAACAAGAGACAGATCACAGATACTACATGGACCTAATTCCTTATTCTCAAGCAGTGGGAAGTCTAATGTATCTTATGATCTCAACAAGATCTGATTTGGCTTATGCTTCTAGTCTTGTTAGCAGATTCATGTCTAATCCTGGCAGAAGACACTGGGAGGCAACAAAATGGATCTTAAGATACTTGAAATATTCAAATGAAGCTAGTCTAATCTACAAACAAAATGATACTTCCAAAGATTATCTTTATGTGTATGTAGATTTTGATTTTGCAGGGGACTTTGACAAAAGAAGATCCTTGTCTAGCTATATTTTCTTAATTGGGAAAAATATCCTAAGCTGGAAAGCCTCTTTACAGTCAGTAATTAATTGCCTTTTCAACAACTGAGGCAGAATTCGTTGCATTGGAAAAAGCTGTCAAAGAAGCCTTATGGCTGAAAGCTTTATTAAGAGACTTTGGGATCATTCAAGACTCAATTCAGATTTTTTGTGATAACCAAAGTATAATACATCTATCTAAAAACTAACAATTTCATACTCGAACAAAGAATATTGACATCAAATATCATTTTGTTCGAGAAGAAATTGAAAAAGGGAAAATAGAAGTTTTGAAGGTTCACACTGCTGATAATGCCTCTGACATGCTAACAAAACCAGTTGCTAAACAGAAACTGAGACATTGTGCAAACTTAATAGGGTTAGTTCTGCCAGAGAAAGGGTGATTGTATCTTCATCAAAGAAGGTGTCAGTATTCTTGTTGGATCAAAGGTGGAAATTGTTAAGTTAGTTACTAGTTGTTGGTTGATCTCAACTACGTTTCTGACTTCTCTTTCTTCCTATAAATAGGCCTCACTTAAGTTTTCTTTATATTATCTTTTGTACTGTGATATAGAGAGATAAGAGTGTATCTTGTGTCTATAGGCCTTTTGTTAAATTCATTCAAGATTAAAGATAAAGTCTTCTTTGATCAATGGATGTAAGCCTTGTGCTGAACCACTTTAATCTCTTGGTGTTTTTTTTTTCTTCCTTTTATCTTCTTTTATTTTCATCTCTGCTCTTACGTTTTACTTGATTGTTCTTATTGCTGGGCAAAGTTTCTCTCTTCATAATATTTTCTTCAAGCATGATTTAGTTTCCAGCTTGAGGTCTTTTTTATTACATGTATGTCAACCACATACATGTTTAAGTTACATAAAATAATCACGGATTTTAGTTTATTGGATTGAGTTAATACAGTCTAAATTTCGAATAAAATATAACTCTTTATTTTATTAAATACATAATTCGTATACAAAATACAAACTATGAGAACCAAGAGATTTAGGACATCAATCCCAATAGAATATCCGTTCAATCTCAGGATCAAAAGACAAAAGATTAGAATCTTTATCACATGACATTTAATAGAATAAATGAGAGTTTTTAAAAATAGAAAAATGAGAAAAACTATTTACACAAAGTAGCAAAATTTTTAGATAGTTATGATAGACGCTGATAGAAGTCTATTAGAGTCTATCAGTGATAAAAATGATAGAAGTCTATCACTGATAGATGCTGATAGAAGTCTATCAATGTCTATCAGTATTTTTTTTGCTATTTTCTGTAAATAGTTTGACATTTTTTCTATTTATAAAAATTTCCCTAGAATAAATCCAACCAATTTTTTTTAAAAAAAACAAATAAAATACATCTTAGTCTAGAATATCTCCAATTCTTAAAATATTAAACAAAAACCATTTTTTTTTTATCAATGACAATGGTGCCTTGTGTGATTCTTGATAGGATGGTAGTAAAAACCCAAAATCGTTTAAAGACAAACTGATAATAAGATGATTAAAGGTGGATTTCATCAAAAAAAAAAAAAAATAGAATTTCCCGAAAACATGTATTCTATATTTTTTCCATAAGGAATCGAGCAGGTCCTTACAAGAAAAAAGACAGAATACCAAAAATTTGATTAAAAATAATTTGCAATGAGCAATTAAGGTTGTTTATATCACTTCCCAATCCACTATTGCTACCATGCACAGGTTTGAGGGTCGTTGATAAATAGATGGGGCCTATATGCATTCTCACCATTTAAAAAGAAACTTAGTTCAGAATCATTTCTTATCAAATACGTTGGAGCTCTAAATCCAAAATTGTATAAACATCTTAAGATAAAGGTTGTGATGGTTCGGGTTATTCCTACTTAGCTTATACGACCCTATAAAAAATTCCTCATATCTAATATCACATCTTACTTCCAATCCCTCTAGATCAACCCCCTAGATAATCTTGTTTTTCTTCCTTTTAAATACCACCATAGCAAACAAATATGCGAGACATTCTGCAAATAAATAATATAAATAGACTCATACATAAACTAGAGAGAAGTGAATTTAGACAAGAACAAAAACACCAAAGACAACTAACAAAAATCTACTATTACATGAAATCAAGATTGACCATGGAAGGAAATTGAATGAAAAAAAAAAATTGCAAAAACTACTCCTAATGTATGGTGACAGTTGCAATTATACCCATAAATTTTCAATTCTAAAAATTGAGTCCTCAAAATAACATAAGTATTAAAATTGGGTCAAATTAGACTTTCAAACTTACATAATTATATAAATTGTAACATTAGTATAAATTTGAGGGTTCAATTTTTATCATATGTGGATCCAATTTCTACAATTATTGTAAGCTTGAGGGTCCGATTTTAACACTTATAGAAGTTTAAGAACCTAATTTTTATAATTGAAAGTCTGAGAGTATTGTACTTGTAATTATCACGATACTTTAGGGGTGAATTTTACAATTTGCCTAAAAAACAAATTCTGTGAAATCTCTCGTAAAAATTGGCCACGGTCAACCTTATGGAAAATCTTGGTAAGGTTGGACCAAATTTAACTCTTACAAAAAAAATCTTGATAAAAGTAGATTGAAATCTCAAGGTGTTAAAGAAATAATAATAATAATTAAAAAAAAAAAAAAAAAAAGTTAAAAACATCATCTCTCCCTCGCAACGAAATTTTTGTTTTCAAAATTTTTCTTTAAAAATAACAACAAATTTATCATAAATTTTGATTAACACTTATCCAAAACATGAAAACAATTATACTGTTAAGATATGATATTAAATTTATCCTCCACCTATCAGCTTAAGCTTTTGGGTGAATTGACGATTGATACAAAATATTTTGGTACGAAGATGAAAGGAAAAAAAAACCAAAAAATGGTTACAATTCACAGCTAAACTTAATAGATGGAGGACAAATTTAATATCATATCTTAACATATACTCTACATAGATCAAAATAAAAAACATACTTATTATCTCATATAGATTCTAAAAAAAAAAAATAAAAATTTAAAATTTGAAGTTTAAAATTGAAGTTAGATTTAAAAAATTATATTAGATAAATTAAGTAAATAAAAGATAAAATAGACTTTTTATTATTTAGAACCCTCTAATTAAAATCTAAAAGGTAAAAAATAGTTCAAATAGTTTTAAAAAAGACGTTAATTTGAAAGGTGAAAAACTTTTTAAATTGATAAAAATGATTATGTTTAAGAATTAAGAAGATAAAACCTTACAAACAAATCTTAAAAGAAAACCGTAATTCAATAATAAAATAATAAAAAGATCATAGAAATATAATTCTAAAATCAAAATATGAGAATTCAAATACACCTTTCATCTCTTCGAAAAGAAAAAAAATATATATATATATATCTTTAAAAAAAAAAATATTTAAGGTAGGTTCGAATTGACTTAAAAAAATATTTTTTAAAAAAAAAAATTCATTTTTATTTAAACTCTTTAGATACAAATTGTTTAAAATACACCTTAAAAGTTATTTTAAATTATTGTCAAATACTTCAATTTTTTTAAAATAATTTATTTTTTAAATTAAACACTTAAAAATATATTACACACTTAATCTAAACGCAAAATAAATTAAAAGCATATTATATTTTGTACATTTTAACTAAAAAAGAAGTTACAACAATGTAACTATCTATTGAAAATATTAAAGAACTTTACCGAAGAGAAAAAGAGCTATCCTTTTCTCACTCTCTATATCATTGATTGCAATGGTTTTAACACTTGCTTGTGAATTTTTTATTAAATAATTTGAAATATTTAAATGCTTCTTGTACTACCTATCTATCTGTGCAGCCTAAAAAGCTGTCTAATAAAATACTGTCGCTGTTCTTTTGTTTTTCATAAAAAAGAAAATTTAATTTTTCGTATTAAAAAAAGAGAGTATGAAATTAGGTGGATTGCGAAGATGCCATTATTTTGCTTCTCCAAGAGTATTATTCTTGGTTCCTCAACATTACATAAAGTACCGTCTTAATTTACATATAAAACTACAGTAGAAAACATTAACCATCACAATACATAACAGCAAGAAAATTGATCTCTCACAGTTCCTGCCTCGGCCCGCCGGACTTGTTCAGCTCGGCGGCCGGCGGTTGTTCATCCAAAATGCCGACCACTCTCGGACCCTTAATCTTCTCCGGCGAAAGCTTCGACAAAGTGACCTTAAGAACCCCATTCTGAAGCTGAGCTTTAACAGACTCCAAATCCGCATTACTCGGCAGCCGAAACTGCCTCCAGAATTTTCCATAGCTTCGTTCCAATCTATGCCAATGCTCACTCTGTTTCTCCTCTTCCCTTTTCCTCTCTCCGATCACTTTCAAAATCCTGTTTTCCTCGTCCAATTCGATCTGCAGCTCCTCCTTCTTCATTCCCGGCACATCTAG

mRNA sequence

ATGGCAAAGACTGAAGAGAAGGGGAAGAATAAACCAAAATGTAATTACTGTCACAAGGAAGACCATTGGAAGAAAGATTGTTGGTCTCTTAACAGAAAGCAAAACAAGAAAAACAAGAATCCAAAACAAAGTGAACCATCACTTCCAGCTACTGAAAGCTCTTTCTCGTTCTCTGATGCTCTAACCATAACAGAAAGAGATGAAGAAAGTTCAAGATCACAAACTAGTGCAGATTGGGTTTTGGATTCTGGTTGTTTCTACCACATGACACTAGATAAAGAATGGTTCTACACTTATAAAAGCTGGGATGGTGGATTAGTATTCATGGGGAATCATGATTCATGTGAAATAGTAGGAATTGGATCAGTATCCTTACAACTTCAAGATGGCACTGCTACTCTTTTGAGAAATAAAACATTAACCATCACAATACATAACAGCAAGAAAATTGATCTCTCACAGTTCCTGCCTCGGCCCGCCGGACTTGTTCAGCTCGGCGGCCGGCGGTTGTTCATCCAAAATGCCGACCACTCTCGGACCCTTAATCTTCTCCGGCGAAAGCTTCGACAAAGTGACCTTAAGAACCCCATTCTGAAGCTGAGCTTTAACAGACTCCAAATCCGCATTACTCGGCAGCCGAAACTGCCTCCAGAATTTTCCATAGCTTCGTTCCAATCTATGCCAATGCTCACTCTGTTTCTCCTCTTCCCTTTTCCTCTCTCCGATCACTTTCAAAATCCTGTTTTCCTCGTCCAATTCGATCTGCAGCTCCTCCTTCTTCATTCCCGGCACATCTAG

Coding sequence (CDS)

ATGGCAAAGACTGAAGAGAAGGGGAAGAATAAACCAAAATGTAATTACTGTCACAAGGAAGACCATTGGAAGAAAGATTGTTGGTCTCTTAACAGAAAGCAAAACAAGAAAAACAAGAATCCAAAACAAAGTGAACCATCACTTCCAGCTACTGAAAGCTCTTTCTCGTTCTCTGATGCTCTAACCATAACAGAAAGAGATGAAGAAAGTTCAAGATCACAAACTAGTGCAGATTGGGTTTTGGATTCTGGTTGTTTCTACCACATGACACTAGATAAAGAATGGTTCTACACTTATAAAAGCTGGGATGGTGGATTAGTATTCATGGGGAATCATGATTCATGTGAAATAGTAGGAATTGGATCAGTATCCTTACAACTTCAAGATGGCACTGCTACTCTTTTGAGAAATAAAACATTAACCATCACAATACATAACAGCAAGAAAATTGATCTCTCACAGTTCCTGCCTCGGCCCGCCGGACTTGTTCAGCTCGGCGGCCGGCGGTTGTTCATCCAAAATGCCGACCACTCTCGGACCCTTAATCTTCTCCGGCGAAAGCTTCGACAAAGTGACCTTAAGAACCCCATTCTGAAGCTGAGCTTTAACAGACTCCAAATCCGCATTACTCGGCAGCCGAAACTGCCTCCAGAATTTTCCATAGCTTCGTTCCAATCTATGCCAATGCTCACTCTGTTTCTCCTCTTCCCTTTTCCTCTCTCCGATCACTTTCAAAATCCTGTTTTCCTCGTCCAATTCGATCTGCAGCTCCTCCTTCTTCATTCCCGGCACATCTAG

Protein sequence

MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRNKTLTITIHNSKKIDLSQFLPRPAGLVQLGGRRLFIQNADHSRTLNLLRRKLRQSDLKNPILKLSFNRLQIRITRQPKLPPEFSIASFQSMPMLTLFLLFPFPLSDHFQNPVFLVQFDLQLLLLHSRHI
Homology
[Close]
BLAST of Lsi08G001850 vs. ExPASy TrEMBL
Match: A0A2G2X831 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_08136 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-16
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 0 

Query: 3   KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALT 62
           +++ KGKN   C YC K +H   +C+ L  KQN+++K  KQ E S  A+           
Sbjct: 214 QSKSKGKNSKYCRYCKKRNHEISECYKLKNKQNREDKG-KQPEKSAEASFVETESDGECF 273

Query: 63  ITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIGS 122
           I    E+ S++    +WVLDSGC +HM+ +++WF TY+S++GGLV MGN   C++VG G+
Sbjct: 274 IASGTEQRSKN----EWVLDSGCTFHMSPNRDWFTTYESFNGGLVLMGNDAQCKVVGKGT 333

Query: 123 VSLQLQDGTATLLRNKTLTITIH 146
           + ++  DG       +TLT   H
Sbjct: 334 IKIKTHDGVV-----RTLTSVRH 346

[Close]
BLAST of Lsi08G001850 vs. ExPASy TrEMBL
Match: A0A077SK66 (Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris OX=3885 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-15
Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 0 

Query: 1   MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDA 60
           M+K++ +   K +C +CH++ HWKKDC     K  KK K P+ +  +   ++     S  
Sbjct: 157 MSKSKGRVVAKDECAFCHEKGHWKKDC----PKLQKKEKVPQDANVAECKSDVESDISLI 216

Query: 61  LTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGI 120
           +++       S S    +W+LDSGC YHM   ++WF+ ++  DGG+V+MGN + C+ VGI
Sbjct: 217 VSL-------SASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGI 276

Query: 121 GSVSLQLQDGTATLLRN 138
           GS+ L+  DG+  +LR+
Sbjct: 277 GSIKLRNHDGSTRILRD 282

[Close]
BLAST of Lsi08G001850 vs. ExPASy TrEMBL
Match: A0A2P5AXR9 (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290120 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-15
Identity = 48/134 (35.82%), Postives = 79/134 (58.96%), Query Frame = 0 

Query: 3   KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALT 62
           ++  K K + KC +CHKE H+K+DC    +K ++K K+P +      A+ +S  +  A  
Sbjct: 125 ESRSKSKGRLKCFHCHKEGHFKRDCPDRKKKVHEKPKDPGE------ASVASDGYDSAEV 184

Query: 63  ITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIGS 122
           +   DE+SS+     +W++DSGC +HM   K WF   +  DGG V +GN+  C++ GIGS
Sbjct: 185 LVVTDEDSSK-----EWIMDSGCSFHMCPTKSWFENLEKTDGGSVLLGNNKPCKVAGIGS 244

Query: 123 VSLQLQDGTATLLR 137
           V +++ DG   +L+
Sbjct: 245 VRIRMFDGMERILQ 247

[Close]
BLAST of Lsi08G001850 vs. ExPASy TrEMBL
Match: G8DCX4 (Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris OX=3885 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-15
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 0 

Query: 1   MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQN-KKNKNPKQSEPSLPATESSFSFSD 60
           M+K++ +   K +C +CH++ HWKKDC  L +K+   ++ N  + +  +   ES  S   
Sbjct: 158 MSKSKGRAVAKDECAFCHEKGHWKKDCPKLQKKEKVLQDANVAECKSDV---ESDISLIV 217

Query: 61  ALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVG 120
           +L         S S    +W+LDSGC YHM   ++WF+ ++  DGG+V+MGN + C+ VG
Sbjct: 218 SL---------SASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVG 277

Query: 121 IGSVSLQLQDGTATLLRN 138
           IGS+ L+  DG+  +LR+
Sbjct: 278 IGSIKLRNHDGSTRILRD 283

[Close]
BLAST of Lsi08G001850 vs. ExPASy TrEMBL
Match: A0A151T3S7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_016214 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.7e-15
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 0 

Query: 2   AKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDAL 61
           ++++ KGKNK +C  C KE H+KKDC                     P  ES    ++ L
Sbjct: 108 SRSKSKGKNK-RCFICDKEGHFKKDC---------------------PNRES----AEVL 167

Query: 62  TITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIG 121
            +T++D       T  +W+LDSGC +HMT +K+WF TY   DGG V +GN+ +C+++GIG
Sbjct: 168 AVTDQD-------THKEWILDSGCSFHMTPNKDWFETYNQVDGGTVLLGNNKACKVIGIG 210

Query: 122 SVSLQLQDGTATLLRN 138
           SV L++ DG   +L++
Sbjct: 228 SVRLRMFDGMDRVLQD 210

[Close]
BLAST of Lsi08G001850 vs. NCBI nr
Match: PHT53674.1 (hypothetical protein CQW23_08136 [Capsicum baccatum])

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-16
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 0 

Query: 3   KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALT 62
           +++ KGKN   C YC K +H   +C+ L  KQN+++K  KQ E S  A+           
Sbjct: 214 QSKSKGKNSKYCRYCKKRNHEISECYKLKNKQNREDKG-KQPEKSAEASFVETESDGECF 273

Query: 63  ITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIGS 122
           I    E+ S++    +WVLDSGC +HM+ +++WF TY+S++GGLV MGN   C++VG G+
Sbjct: 274 IASGTEQRSKN----EWVLDSGCTFHMSPNRDWFTTYESFNGGLVLMGNDAQCKVVGKGT 333

Query: 123 VSLQLQDGTATLLRNKTLTITIH 146
           + ++  DG       +TLT   H
Sbjct: 334 IKIKTHDGVV-----RTLTSVRH 346

[Close]
BLAST of Lsi08G001850 vs. NCBI nr
Match: KHN13665.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-15
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 0 

Query: 3   KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALT 62
           K   K KN+  C YC KE H++K+C     ++ KKN      E  +      +  ++ L+
Sbjct: 216 KRRSKYKNEKACYYCKKEGHFRKEC----PERKKKNNGKYNDESDIAVVADGYESAEVLS 275

Query: 63  ITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIGS 122
           I       S  + S +W+LDSGC +HMT + EWF +YK  DGG V MGN+  C ++GIG+
Sbjct: 276 I-------STKKHSEEWILDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNNMVCNVIGIGT 335

Query: 123 VSLQLQDGTATL 135
           + L++QDG   L
Sbjct: 336 IKLKVQDGFVKL 336

[Close]
BLAST of Lsi08G001850 vs. NCBI nr
Match: CDN96898.1 (putative Ty-1 copia retrotransposon [Phaseolus vulgaris])

HSP 1 Score: 92.4 bits (228), Expect = 6.2e-15
Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 0 

Query: 1   MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDA 60
           M+K++ +   K +C +CH++ HWKKDC     K  KK K P+ +  +   ++     S  
Sbjct: 157 MSKSKGRVVAKDECAFCHEKGHWKKDC----PKLQKKEKVPQDANVAECKSDVESDISLI 216

Query: 61  LTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGI 120
           +++       S S    +W+LDSGC YHM   ++WF+ ++  DGG+V+MGN + C+ VGI
Sbjct: 217 VSL-------SASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGI 276

Query: 121 GSVSLQLQDGTATLLRN 138
           GS+ L+  DG+  +LR+
Sbjct: 277 GSIKLRNHDGSTRILRD 282

[Close]
BLAST of Lsi08G001850 vs. NCBI nr
Match: KAG6420009.1 (hypothetical protein SASPL_116523 [Salvia splendens])

HSP 1 Score: 92.0 bits (227), Expect = 8.0e-15
Identity = 54/136 (39.71%), Postives = 83/136 (61.03%), Query Frame = 0 

Query: 3   KTEEKGKNKPKCNYCHKEDHWKKDCWSL-NRKQNKKNKNPKQSEPSLPATESSFSFSDAL 62
           K++ K  NK KCNYC K+ H K DC+ L N+++N  N+N    E S+ A ES  +   A 
Sbjct: 219 KSKSKHANK-KCNYCKKKGHIKADCFKLKNKEKNNINQNNNTGEASVAADESDGTVFIA- 278

Query: 63  TITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIG 122
                   ++  ++S +W+LDSGC YH+  +++ F TY+S+DGG V MGN+  C++VG G
Sbjct: 279 -------SANVVRSSDEWILDSGCSYHICPNRDCFSTYESYDGGYVLMGNNSPCKVVGKG 338

Query: 123 SVSLQLQDGTATLLRN 138
           +V +++ DG    L N
Sbjct: 339 AVQIKMFDGIIRTLTN 345

[Close]
BLAST of Lsi08G001850 vs. NCBI nr
Match: PON41343.1 (Zinc finger, CCHC-type [Parasponia andersonii])

HSP 1 Score: 92.0 bits (227), Expect = 8.0e-15
Identity = 48/134 (35.82%), Postives = 79/134 (58.96%), Query Frame = 0 

Query: 3   KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALT 62
           ++  K K + KC +CHKE H+K+DC    +K ++K K+P +      A+ +S  +  A  
Sbjct: 125 ESRSKSKGRLKCFHCHKEGHFKRDCPDRKKKVHEKPKDPGE------ASVASDGYDSAEV 184

Query: 63  ITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIGS 122
           +   DE+SS+     +W++DSGC +HM   K WF   +  DGG V +GN+  C++ GIGS
Sbjct: 185 LVVTDEDSSK-----EWIMDSGCSFHMCPTKSWFENLEKTDGGSVLLGNNKPCKVAGIGS 244

Query: 123 VSLQLQDGTATLLR 137
           V +++ DG   +L+
Sbjct: 245 VRIRMFDGMERILQ 247

The following BLAST results are available for this feature:
BLAST of Lsi08G001850 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G001850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2G2X8311.6e-1637.76Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_08136 PE=4 SV=1[more]
A0A077SK663.0e-1535.77Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris OX=3885 PE=4 SV=1[more]
A0A2P5AXR93.9e-1535.82Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290120 PE=... [more]
G8DCX45.1e-1536.23Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris OX=3885 PE=4 SV=1[more]
A0A151T3S78.7e-1537.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... [more]
BLAST of Lsi08G001850 vs. NCBI nr
Match NameE-valueIdentityDescription
PHT53674.13.3e-1637.76hypothetical protein CQW23_08136 [Capsicum baccatum][more]
KHN13665.12.8e-1537.88Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so... [more]
CDN96898.16.2e-1535.77putative Ty-1 copia retrotransposon [Phaseolus vulgaris][more]
KAG6420009.18.0e-1539.71hypothetical protein SASPL_116523 [Salvia splendens][more]
PON41343.18.0e-1535.82Zinc finger, CCHC-type [Parasponia andersonii][more]
BLAST of Lsi08G001850 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G001850.1Lsi08G001850.1mRNA