Lsi08G001440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G001440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome b559 subunit alpha
Location	chr08: 3074570 .. 3075356 (-)
RNA-Seq Expression	Lsi08G001440
Synteny	Lsi08G001440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATGTGGAGCTCGGCATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAGGAGGACCAAATGACTATCGATAAAACTTATCCTATTTTTACAGTGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTACCGTTTCTTTTTTAGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAAATAAAAGAAAATACTAAATAATAGTACGAATTATCTTATCCCATTCGGAAGGATATCATCTCATAATTATCTATGACTGTTTCTGTCTCTAGCACGACCACTTGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAGTCGGTATTTTCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTG

mRNA sequence

AATATGTGGAGCTCGGCATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTATGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTACCGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCACACGACCACTTGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAGTCGGTATTTTCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTG

Coding sequence (CDS)

ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTATGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTACCGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCACACGACCACTTGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAGTCGGTATTTTCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTG

Protein sequence

MSGSTGERSFADIITSWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTTRPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

Homology

[Close]

BLAST of Lsi08G001440 vs. ExPASy Swiss-Prot
Match: Q70XY9 (Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-26
Identity = 62/81 (76.54%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFMR 64
          QGIPLITGRFDSLEQLDEF R
Sbjct: 61 QGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Lsi08G001440 vs. ExPASy Swiss-Prot
Match: P56779 (Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4)

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-26
Identity = 62/81 (76.54%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFMR 64
          QGIPLITGRFDSLEQLDEF R
Sbjct: 61 QGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Lsi08G001440 vs. ExPASy Swiss-Prot
Match: P59702 (Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-26
Identity = 62/81 (76.54%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFMR 64
          QGIPLITGRFDSLEQLDEF R
Sbjct: 61 QGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Lsi08G001440 vs. ExPASy Swiss-Prot
Match: P69382 (Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-26
Identity = 62/81 (76.54%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFMR 64
          QGIPLITGRFDSLEQLDEF R
Sbjct: 61 QGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Lsi08G001440 vs. ExPASy Swiss-Prot
Match: Q4VZH5 (Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-26
Identity = 62/81 (76.54%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFMR 64
          QGIPLITGRFDSLEQLDEF R
Sbjct: 61 QGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Lsi08G001440 vs. ExPASy TrEMBL
Match: A0A7J6HPJ5 (Cytochrome b559 subunit alpha OS=Cannabis sativa OX=3483 GN=F8388_019796 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60
Identity = 140/225 (62.22%), Postives = 148/225 (65.78%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERS ADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 80  MSGSTGERSLADIITSIRDWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 139

Query: 61  QGIPLITGRFDSLEQLDEF-------------------MRWLAVHGLAVPTGQYQQCNSS 120
           QG+PLITGRFDSLEQLDEF                   +RWLAVHGLAVPT  +    SS
Sbjct: 140 QGVPLITGRFDSLEQLDEFSRSFWEAQMTIDRTYPIFTVRWLAVHGLAVPTVSF--LGSS 199

Query: 121 NDKPNPNYRAMTQSNPNEQNVELNRTT--------------------------RPLDEMG 163
           NDKPNPN+RA TQ NPNEQNVELNRT+                          RP DEM 
Sbjct: 200 NDKPNPNHRATTQPNPNEQNVELNRTSLYWGNSLIPFGRISSHNYLWLFMSLARPPDEMW 259

[Close]

BLAST of Lsi08G001440 vs. ExPASy TrEMBL
Match: A0A7J6HZU7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004365 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.5e-57
Identity = 133/199 (66.83%), Postives = 141/199 (70.85%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERS ADIITS                  WLFVSTGLAYDVFGSPRPNE FTESR
Sbjct: 80  MSGSTGERSLADIITSIRDWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNECFTESR 139

Query: 61  QGIPLITGRFDSLEQLDEF-------------------MRWLAVHGLAVPTGQYQQCNSS 120
           QG+PLITGRFDSLEQLDEF                   +RWLAVHGL VPT  +    SS
Sbjct: 140 QGVPLITGRFDSLEQLDEFSRSFWEAQMTIDRTYPIFTVRWLAVHGLVVPTVSF--LGSS 199

Query: 121 NDKPNPNYRAMTQSNPNEQNVELNRTTRPLDEMGREVGQMAETTGRIPLWIIGTVTGIPV 163
           NDKPN N+RA TQSNPNEQNVELNRT+        +VGQMA+TTGRIPLWIIGTV GI V
Sbjct: 200 NDKPNSNHRATTQSNPNEQNVELNRTSL----YWGKVGQMADTTGRIPLWIIGTVAGILV 259

[Close]

BLAST of Lsi08G001440 vs. ExPASy TrEMBL
Match: A0A3Q7X043 (Cytochrome b559 subunit alpha OS=Cicer arietinum OX=3827 GN=LOC113785018 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.2e-48
Identity = 104/132 (78.79%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61  QGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQQCNSSNDKPNPNYRAMTQSN 111
           QGIPLITGRFDSLEQLDEF+RWLAVHGLAVPT     +YQQC+SSNDKPNPNYRA TQSN
Sbjct: 61  QGIPLITGRFDSLEQLDEFIRWLAVHGLAVPTVLFWDRYQQCSSSNDKPNPNYRATTQSN 120

[Close]

BLAST of Lsi08G001440 vs. ExPASy TrEMBL
Match: A0A6A5LB38 (Cytochrome b559 subunit alpha OS=Lupinus albus OX=3870 GN=Lal_00028302 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 8.1e-48
Identity = 104/132 (78.79%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61  QGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQQCNSSNDKPNPNYRAMTQSN 111
           QGIPLITGRFD LEQLDEF+RWLAVHGLAVPT     QYQQC+SSNDKPNPNYRA TQSN
Sbjct: 61  QGIPLITGRFDPLEQLDEFIRWLAVHGLAVPTVSFWDQYQQCSSSNDKPNPNYRATTQSN 120

[Close]

BLAST of Lsi08G001440 vs. ExPASy TrEMBL
Match: A0A0V0HJS1 (Cytochrome b559 subunit alpha OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.4e-44
Identity = 105/152 (69.08%), Postives = 108/152 (71.05%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61  QGIPLITGRFDSLEQLDEF-------------------MRWLAVHGLAVPT-----GQYQ 111
           QGIPLITGRFDSLEQLDEF                   +RWLAVHGLAVPT      QYQ
Sbjct: 61  QGIPLITGRFDSLEQLDEFSRSFXEALMTIDRTYPIFTVRWLAVHGLAVPTVFFXXDQYQ 120

[Close]

BLAST of Lsi08G001440 vs. NCBI nr
Match: KAF4396250.1 (hypothetical protein F8388_019796 [Cannabis sativa])

HSP 1 Score: 241.5 bits (615), Expect = 5.0e-60
Identity = 140/225 (62.22%), Postives = 148/225 (65.78%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERS ADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 80  MSGSTGERSLADIITSIRDWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 139

Query: 61  QGIPLITGRFDSLEQLDEF-------------------MRWLAVHGLAVPTGQYQQCNSS 120
           QG+PLITGRFDSLEQLDEF                   +RWLAVHGLAVPT  +    SS
Sbjct: 140 QGVPLITGRFDSLEQLDEFSRSFWEAQMTIDRTYPIFTVRWLAVHGLAVPTVSF--LGSS 199

Query: 121 NDKPNPNYRAMTQSNPNEQNVELNRTT--------------------------RPLDEMG 163
           NDKPNPN+RA TQ NPNEQNVELNRT+                          RP DEM 
Sbjct: 200 NDKPNPNHRATTQPNPNEQNVELNRTSLYWGNSLIPFGRISSHNYLWLFMSLARPPDEMW 259

[Close]

BLAST of Lsi08G001440 vs. NCBI nr
Match: KAF4400822.1 (hypothetical protein G4B88_004365 [Cannabis sativa])

HSP 1 Score: 232.3 bits (591), Expect = 3.0e-57
Identity = 133/199 (66.83%), Postives = 141/199 (70.85%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERS ADIITS                  WLFVSTGLAYDVFGSPRPNE FTESR
Sbjct: 80  MSGSTGERSLADIITSIRDWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNECFTESR 139

Query: 61  QGIPLITGRFDSLEQLDEF-------------------MRWLAVHGLAVPTGQYQQCNSS 120
           QG+PLITGRFDSLEQLDEF                   +RWLAVHGL VPT  +    SS
Sbjct: 140 QGVPLITGRFDSLEQLDEFSRSFWEAQMTIDRTYPIFTVRWLAVHGLVVPTVSF--LGSS 199

Query: 121 NDKPNPNYRAMTQSNPNEQNVELNRTTRPLDEMGREVGQMAETTGRIPLWIIGTVTGIPV 163
           NDKPN N+RA TQSNPNEQNVELNRT+        +VGQMA+TTGRIPLWIIGTV GI V
Sbjct: 200 NDKPNSNHRATTQSNPNEQNVELNRTSL----YWGKVGQMADTTGRIPLWIIGTVAGILV 259

[Close]

BLAST of Lsi08G001440 vs. NCBI nr
Match: XP_027187174.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113785018 [Cicer arietinum])

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-47
Identity = 104/132 (78.79%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61  QGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQQCNSSNDKPNPNYRAMTQSN 111
           QGIPLITGRFDSLEQLDEF+RWLAVHGLAVPT     +YQQC+SSNDKPNPNYRA TQSN
Sbjct: 61  QGIPLITGRFDSLEQLDEFIRWLAVHGLAVPTVLFWDRYQQCSSSNDKPNPNYRATTQSN 120

[Close]

BLAST of Lsi08G001440 vs. NCBI nr
Match: KAF1855882.1 (hypothetical protein Lal_00028302 [Lupinus albus])

HSP 1 Score: 199.9 bits (507), Expect = 1.7e-47
Identity = 104/132 (78.79%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61  QGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQQCNSSNDKPNPNYRAMTQSN 111
           QGIPLITGRFD LEQLDEF+RWLAVHGLAVPT     QYQQC+SSNDKPNPNYRA TQSN
Sbjct: 61  QGIPLITGRFDPLEQLDEFIRWLAVHGLAVPTVSFWDQYQQCSSSNDKPNPNYRATTQSN 120

[Close]

BLAST of Lsi08G001440 vs. NCBI nr
Match: XP_034508898.1 (LOW QUALITY PROTEIN: cytochrome b559 subunit alpha-like [Ailuropoda melanoleuca])

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-45
Identity = 102/132 (77.27%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 1   MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
           MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTE+R
Sbjct: 1   MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 60

Query: 61  QGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQQCNSSNDKPNPNYRAMTQSN 111
           QGIPLITGRFD LEQLDEF+RWLAVHGLAVPT     QYQQC+SSNDK N NYRAMTQSN
Sbjct: 61  QGIPLITGRFDPLEQLDEFIRWLAVHGLAVPTVLFWDQYQQCSSSNDKLNLNYRAMTQSN 120

[Close]

BLAST of Lsi08G001440 vs. TAIR 10
Match: ATCG00580.1 (photosystem II reaction center protein E )

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 61/81 (75.31%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESR 60
          MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFMR 64
          QGIPLITGRFD LEQLDEF R
Sbjct: 61 QGIPLITGRFDPLEQLDEFSR 81

[Close]

BLAST of Lsi08G001440 vs. TAIR 10
Match: ATCG00550.1 (photosystem II reaction center protein J )

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 123 MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL 163
           MA+TTGRIPLW+IGTV GI VIGL+GIFFYGSYSGLGSSL
Sbjct: 1   MADTTGRIPLWVIGTVAGILVIGLIGIFFYGSYSGLGSSL 40

The following BLAST results are available for this feature:

BLAST of Lsi08G001440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q70XY9	4.9e-26	76.54	Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3	[more]
P56779	4.9e-26	76.54	Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4	[more]
P59702	4.9e-26	76.54	Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3	[more]
P69382	4.9e-26	76.54	Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2	[more]
Q4VZH5	4.9e-26	76.54	Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1	[more]

BLAST of Lsi08G001440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6HPJ5	2.4e-60	62.22	Cytochrome b559 subunit alpha OS=Cannabis sativa OX=3483 GN=F8388_019796 PE=3 SV...	[more]
A0A7J6HZU7	1.5e-57	66.83	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004365 PE=3 SV=1	[more]
A0A3Q7X043	6.2e-48	78.79	Cytochrome b559 subunit alpha OS=Cicer arietinum OX=3827 GN=LOC113785018 PE=3 SV...	[more]
A0A6A5LB38	8.1e-48	78.79	Cytochrome b559 subunit alpha OS=Lupinus albus OX=3870 GN=Lal_00028302 PE=3 SV=1	[more]
A0A0V0HJS1	2.4e-44	69.08	Cytochrome b559 subunit alpha OS=Solanum chacoense OX=4108 PE=3 SV=1	[more]

BLAST of Lsi08G001440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4396250.1	5.0e-60	62.22	hypothetical protein F8388_019796 [Cannabis sativa]	[more]
KAF4400822.1	3.0e-57	66.83	hypothetical protein G4B88_004365 [Cannabis sativa]	[more]
XP_027187174.1	1.3e-47	78.79	LOW QUALITY PROTEIN: uncharacterized protein LOC113785018 [Cicer arietinum]	[more]
KAF1855882.1	1.7e-47	78.79	hypothetical protein Lal_00028302 [Lupinus albus]	[more]
XP_034508898.1	1.6e-45	77.27	LOW QUALITY PROTEIN: cytochrome b559 subunit alpha-like [Ailuropoda melanoleuca]	[more]

BLAST of Lsi08G001440 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00580.1	1.3e-26	75.31	photosystem II reaction center protein E	[more]
ATCG00550.1	1.7e-13	87.50	photosystem II reaction center protein J	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.250.2070		coord: 123..162 e-value: 1.7E-22 score: 80.8
None	No IPR available	PANTHER	PTHR33391:SF15	CYTOCHROME B559 SUBUNIT ALPHA	coord: 14..63
None	No IPR available	PANTHER	PTHR33391	CYTOCHROME B559 SUBUNIT BETA-RELATED	coord: 14..63
None	No IPR available	SUPERFAMILY	161045	Cytochrome b559 subunits	coord: 3..64
IPR037025	Photosystem II cytochrome b559, alpha subunit superfamily	GENE3D	1.20.5.860	Photosystem II cytochrome b559, alpha subunit	coord: 14..65 e-value: 2.5E-23 score: 83.7
IPR013082	Photosystem II cytochrome b559, alpha subunit, lumenal region	PFAM	PF00284	Cytochrom_B559a	coord: 24..61 e-value: 1.1E-20 score: 73.1
IPR002682	Photosystem II PsbJ	PFAM	PF01788	PsbJ	coord: 125..162 e-value: 3.7E-21 score: 74.7
IPR002682	Photosystem II PsbJ	HAMAP	MF_01305	PSII_PsbJ	coord: 124..162 score: 15.592584
IPR037267	Photosystem II PsbJ superfamily	SUPERFAMILY	161021	Photosystem II reaction center protein J, PsbJ	coord: 129..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G001440.1	Lsi08G001440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding