Lsi08G001290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G001290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	TMV resistance protein N-like
Location	chr08: 2805672 .. 2806273 (-)
RNA-Seq Expression	Lsi08G001290
Synteny	Lsi08G001290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCTGGGGAGATAGCGGACTTGACTTGGTTTTGCCTTATCCAAGGTCAACTATCACTTTACGAATGATCAAAGGAAGTCATTCATATTTTTCTTATTTTCCATTTCCTTCTTCAGGCTGTGCTTTCTAGCATTATTGAAGCTTCATCATCAAATACTCTTAAGATGCGTTTCGATATTTTCATAAGTTTTAGAGGCGAAGATAACCGTAACACGTTTATCGGATATTTGTACAAAGAGTTGGTTGAATTAGGAATATCGATTTTTATGGACGACAAGAAACTCTTGATTGGAGATAGTCTTAGTGAAAAACTTATTAGAGCAATTGAAAAATCAGGGTCTTTCATCGTTGTTTTATCGGAGAACTATGCTTCGTCAAAGTGGTGTTTGAGAGAACTGGCGAAGATAATAGATTGTATGGCTGAACAAAAGCATCGAGTACTCCTTCCCGTATTTTATCACGTGAATCCTTCTGATGTTCGATATCAATCGGGGAGTTTCGAGAAAAGCTTCCGCAAACACGAAGAAGCTCTTCAAGAACTCGACTATATGGAAAGAGATACATACATGAAGGAGGTTCAACAATGGAGGAGGGCTATGACA

mRNA sequence

TGGCTGGGGAGATAGCGGACTTGACTTGGCTGTGCTTTCTAGCATTATTGAAGCTTCATCATCAAATACTCTTAAGATGCGTTTCGATATTTTCATAAGTTTTAGAGGCGAAGATAACCGTAACACGTTTATCGGATATTTGTACAAAGAGTTGGTTGAATTAGGAATATCGATTTTTATGGACGACAAGAAACTCTTGATTGGAGATAGTCTTAGTGAAAAACTTATTAGAGCAATTGAAAAATCAGGGTCTTTCATCGTTGTTTTATCGGAGAACTATGCTTCGTCAAAGTGGTGTTTGAGAGAACTGGCGAAGATAATAGATTGTATGGCTGAACAAAAGCATCGAGTACTCCTTCCCGTATTTTATCACGTGAATCCTTCTGATGTTCGATATCAATCGGGGAGTTTCGAGAAAAGCTTCCGCAAACACGAAGAAGCTCTTCAAGAACTCGACTATATGGAAAGAGATACATACATGAAGGAGGTTCAACAATGGAGGAGGGCTATGACA

Coding sequence (CDS)

ATGCGTTTCGATATTTTCATAAGTTTTAGAGGCGAAGATAACCGTAACACGTTTATCGGATATTTGTACAAAGAGTTGGTTGAATTAGGAATATCGATTTTTATGGACGACAAGAAACTCTTGATTGGAGATAGTCTTAGTGAAAAACTTATTAGAGCAATTGAAAAATCAGGGTCTTTCATCGTTGTTTTATCGGAGAACTATGCTTCGTCAAAGTGGTGTTTGAGAGAACTGGCGAAGATAATAGATTGTATGGCTGAACAAAAGCATCGAGTACTCCTTCCCGTATTTTATCACGTGAATCCTTCTGATGTTCGATATCAATCGGGGAGTTTCGAGAAAAGCTTCCGCAAACACGAAGAAGCTCTTCAAGAACTCGACTATATGGAAAGAGATACATACATGAAGGAGGTTCAACAATGGAGGAGGGCTATGACA

Protein sequence

MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFIVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEEALQELDYMERDTYMKEVQQWRRAMT

Homology

[Close]

BLAST of Lsi08G001290 vs. ExPASy Swiss-Prot
Match: A0A290U7C4 (Disease resistance protein Roq1 OS=Nicotiana benthamiana OX=4100 GN=ROQ1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.8e-28
Identity = 68/144 (47.22%), Postives = 98/144 (68.06%), Query Frame = 0


Query: 3   FDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFIV 62
           +D+F+SFRGED R TF+G+L+  L+E GI  FMDDK+L  G S+S +L++AI +S   +V
Sbjct: 12  YDVFLSFRGEDTRKTFVGHLFNALIEKGIHTFMDDKELKRGKSISSELMKAIGESRFAVV 71

Query: 63  VLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEEA 122
           V S+NYASS WCL EL KI++ + E+   +++PVFY V+PS VR Q+G +   F K E  
Sbjct: 72  VFSKNYASSTWCLEELVKILE-IHEKFELIVVPVFYDVDPSTVRKQNGEYAVCFTKFEAN 131

Query: 123 LQELDYMERDTYMKEVQQWRRAMT 147
           L +    +RD    +V +WR A+T
Sbjct: 132 LVD----DRD----KVLRWREALT 146

[Close]

BLAST of Lsi08G001290 vs. ExPASy Swiss-Prot
Match: Q40392 (TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 65/143 (45.45%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 3   FDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFIV 62
           +D+F+SFRGED R TF  +LY+ L + GI  F DDK+L  G ++  +L +AIE+S   IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 63  VLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEEA 122
           V SENYA+S+WCL EL KI++C    K  V +P+FY V+PS VR Q  SF K+F +HE  
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTV-IPIFYDVDPSHVRNQKESFAKAFEEHETK 131

Query: 123 LQELDYMERDTYMKEVQQWRRAM 146
            ++         ++ +Q+WR A+
Sbjct: 132 YKD--------DVEGIQRWRIAL 145

[Close]

BLAST of Lsi08G001290 vs. ExPASy Swiss-Prot
Match: Q40253 (Disease resistance protein L6 OS=Linum usitatissimum OX=4006 GN=L6 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.8e-27
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           + +++F+SFRG D R  F  +LY+ L    I  F DD +LL G  +   L+RAI++S  +
Sbjct: 59  VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIY 118

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKH 120
           + ++S  YA SKWCL ELA+I+    E   R++LP+FY V+PSDVR+Q+G ++K+FRKH
Sbjct: 119 VPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKH 177

[Close]

BLAST of Lsi08G001290 vs. ExPASy Swiss-Prot
Match: V9M2S5 (Disease resistance protein RPV1 OS=Vitis rotundifolia OX=103349 GN=RPV1 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26
Identity = 63/144 (43.75%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 3   FDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFIV 62
           +D+F+SFRGED R  F  +LY  L   GI  F DD +L  G++++ +L++AIE+S S ++
Sbjct: 24  YDVFLSFRGEDTRYNFTDHLYSALGRRGIRTFRDD-RLRRGEAIAPELLKAIEESRSSVI 83

Query: 63  VLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEEA 122
           V SENYA S+WCL EL KI++C  +  H V  P+FYHV+PS VR Q GSF ++F  +EE 
Sbjct: 84  VFSENYAHSRWCLDELVKIMECQKDLGHAV-FPIFYHVDPSHVRKQEGSFGEAFAGYEE- 143

Query: 123 LQELDYMERDTYMKEVQQWRRAMT 147
                      +  ++ +WR A+T
Sbjct: 144 ----------NWKDKIPRWRTALT 154

[Close]

BLAST of Lsi08G001290 vs. ExPASy Swiss-Prot
Match: V9M398 (Disease resistance protein RUN1 OS=Vitis rotundifolia OX=103349 GN=RUN1 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-26
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 3   FDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFIV 62
           +D+F+SFRGED R  F  +LY  L   GI  F DD KL  G++++ +L++AIE+S S ++
Sbjct: 27  YDVFLSFRGEDTRFNFTDHLYSALGRRGIRTFRDD-KLRRGEAIAPELLKAIEESRSSVI 86

Query: 63  VLSENYASSKWCLRELAKIIDCMAEQKH--RVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 122
           V SENYA S+WCL EL KI++C  ++K     + P+FYHV+PS VR Q GSF ++F  + 
Sbjct: 87  VFSENYARSRWCLDELVKIMECHKDKKDPGHAVFPIFYHVDPSHVRKQEGSFGEAFAGYG 146

Query: 123 EALQELDYMERDTYMKEVQQWRRAMT 147
           E L++           ++ +WR A+T
Sbjct: 147 ENLKD-----------KIPRWRTALT 160

[Close]

BLAST of Lsi08G001290 vs. ExPASy TrEMBL
Match: Q5DMW2 (MRGH9 OS=Cucumis melo OX=3656 GN=MRGH9 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 123/146 (84.25%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           M FD FISFRGED RNTF G+LYKELV LGI+ FMDDKKLLIGDSLSEKLI+AIEKS SF
Sbjct: 1   MSFDSFISFRGEDTRNTFTGHLYKELVGLGITTFMDDKKLLIGDSLSEKLIKAIEKSDSF 60

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 120
           IVVLSENYASSKWCLRELAKIIDC  EQKHRVLLPVFYHVNP DVR QSG FE SFR HE
Sbjct: 61  IVVLSENYASSKWCLRELAKIIDCTDEQKHRVLLPVFYHVNPHDVRRQSGCFENSFRLHE 120

Query: 121 EALQELDYMERDTYMKEVQQWRRAMT 147
           E L+ELD+MERD YM+EVQQWRRA T
Sbjct: 121 ELLRELDHMERDKYMEEVQQWRRAFT 146

[Close]

BLAST of Lsi08G001290 vs. ExPASy TrEMBL
Match: A0A1S3C9Z0 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498649 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 123/146 (84.25%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           M FD FISFRGED RNTF G+LYKELV LGI+ FMDDKKLLIGDSLSEKLI+AIEKS SF
Sbjct: 1   MSFDSFISFRGEDTRNTFTGHLYKELVGLGITTFMDDKKLLIGDSLSEKLIKAIEKSDSF 60

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 120
           IVVLSENYASSKWCLRELAKIIDC  EQKHRVLLPVFYHVNP DVR QSG FE SFR HE
Sbjct: 61  IVVLSENYASSKWCLRELAKIIDCTDEQKHRVLLPVFYHVNPHDVRRQSGCFENSFRLHE 120

Query: 121 EALQELDYMERDTYMKEVQQWRRAMT 147
           E L+ELD+MERD YM+EVQQWRRA T
Sbjct: 121 ELLRELDHMERDKYMEEVQQWRRAFT 146

[Close]

BLAST of Lsi08G001290 vs. ExPASy TrEMBL
Match: M4QSV9 (Fom-1 OS=Cucumis melo OX=3656 GN=Fom-1 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 121/146 (82.88%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           M FD FISFRG+D RNTF G+LYKELV LGI+ FMDDKKL IGDSLSEKLI+AIEKS SF
Sbjct: 1   MSFDSFISFRGKDTRNTFTGHLYKELVGLGITTFMDDKKLFIGDSLSEKLIKAIEKSDSF 60

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 120
           IVVLSENYASSKWCLRELAKIIDC  EQKHRVLLPVFYHVNP DVR+QSG FE SFR HE
Sbjct: 61  IVVLSENYASSKWCLRELAKIIDCTDEQKHRVLLPVFYHVNPHDVRHQSGCFENSFRLHE 120

Query: 121 EALQELDYMERDTYMKEVQQWRRAMT 147
           E L+ELD+MERD YM+EVQQWRRA T
Sbjct: 121 ELLRELDHMERDKYMEEVQQWRRAFT 146

[Close]

BLAST of Lsi08G001290 vs. ExPASy TrEMBL
Match: A0A5A7T771 (Fom-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001170 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 122/146 (83.56%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           M FD FISFRGED RNTF G+LYKELV LGI+ FMDDKKLLIGDSLSEKLI+AIE S SF
Sbjct: 1   MSFDSFISFRGEDTRNTFTGHLYKELVGLGITTFMDDKKLLIGDSLSEKLIKAIENSDSF 60

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 120
           IVVLSENYASSKWCLRELAKIIDC  EQKHRVLLPVFYHVNP DVR QSG FE SFR HE
Sbjct: 61  IVVLSENYASSKWCLRELAKIIDCTDEQKHRVLLPVFYHVNPRDVRRQSGCFENSFRLHE 120

Query: 121 EALQELDYMERDTYMKEVQQWRRAMT 147
           E L+ELD+MERD YM+EVQQWRRA T
Sbjct: 121 ELLRELDHMERDKYMEEVQQWRRAFT 146

[Close]

BLAST of Lsi08G001290 vs. ExPASy TrEMBL
Match: A0A0A0KSR1 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G647570 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.2e-52
Identity = 111/144 (77.08%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 3   FDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFIV 62
           FD FISFRGED RNTF G+LYK LV+ GIS FMDDKKLLIGDSLSE LI AIEKSGSFIV
Sbjct: 4   FDTFISFRGEDTRNTFTGHLYKALVDFGISTFMDDKKLLIGDSLSEDLIGAIEKSGSFIV 63

Query: 63  VLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEEA 122
           VLSENYASSKWCLREL KII CM EQK RV LPVFYHV+P DVR+QSG F+KSF ++EE 
Sbjct: 64  VLSENYASSKWCLRELVKIIGCMVEQKRRV-LPVFYHVSPHDVRHQSGCFKKSFCEYEEI 123

Query: 123 LQELDYMERDTYMKEVQQWRRAMT 147
           LQEL+  E D Y KEVQ+WR A+T
Sbjct: 124 LQELNDREGDKYTKEVQEWRSALT 146

[Close]

BLAST of Lsi08G001290 vs. NCBI nr
Match: XP_038891070.1 (disease resistance protein RPV1-like isoform X1 [Benincasa hispida] >XP_038891071.1 disease resistance protein RPV1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 3.1e-61
Identity = 125/146 (85.62%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           M FDIFISFRG+D RNTF G+LYKELVELGIS FMDDKKLLIGDSLSEKLIRAIEKS SF
Sbjct: 1   MSFDIFISFRGKDTRNTFTGHLYKELVELGISTFMDDKKLLIGDSLSEKLIRAIEKSWSF 60

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 120
           IVVLSENYASSKWCLREL KIIDCMA QKHRV +PVFYHVNP DVR+Q G F+KSFRKHE
Sbjct: 61  IVVLSENYASSKWCLRELVKIIDCMAVQKHRV-IPVFYHVNPRDVRHQLGCFKKSFRKHE 120

Query: 121 EALQELDYMERDTYMKEVQQWRRAMT 147
           E LQEL+ MERD YMKEVQQWRRA+T
Sbjct: 121 EILQELNNMERDKYMKEVQQWRRALT 145

[Close]

BLAST of Lsi08G001290 vs. NCBI nr
Match: XP_038891076.1 (disease resistance protein RPV1-like isoform X3 [Benincasa hispida] >XP_038891077.1 disease resistance protein RPV1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 3.1e-61
Identity = 125/146 (85.62%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           M FDIFISFRG+D RNTF G+LYKELVELGIS FMDDKKLLIGDSLSEKLIRAIEKS SF
Sbjct: 1   MSFDIFISFRGKDTRNTFTGHLYKELVELGISTFMDDKKLLIGDSLSEKLIRAIEKSWSF 60

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 120
           IVVLSENYASSKWCLREL KIIDCMA QKHRV +PVFYHVNP DVR+Q G F+KSFRKHE
Sbjct: 61  IVVLSENYASSKWCLRELVKIIDCMAVQKHRV-IPVFYHVNPRDVRHQLGCFKKSFRKHE 120

Query: 121 EALQELDYMERDTYMKEVQQWRRAMT 147
           E LQEL+ MERD YMKEVQQWRRA+T
Sbjct: 121 EILQELNNMERDKYMKEVQQWRRALT 145

[Close]

BLAST of Lsi08G001290 vs. NCBI nr
Match: XP_038891073.1 (disease resistance protein RPV1-like isoform X2 [Benincasa hispida] >XP_038891074.1 disease resistance protein RPV1-like isoform X2 [Benincasa hispida] >XP_038891075.1 disease resistance protein RPV1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 3.1e-61
Identity = 125/146 (85.62%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           M FDIFISFRG+D RNTF G+LYKELVELGIS FMDDKKLLIGDSLSEKLIRAIEKS SF
Sbjct: 1   MSFDIFISFRGKDTRNTFTGHLYKELVELGISTFMDDKKLLIGDSLSEKLIRAIEKSWSF 60

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 120
           IVVLSENYASSKWCLREL KIIDCMA QKHRV +PVFYHVNP DVR+Q G F+KSFRKHE
Sbjct: 61  IVVLSENYASSKWCLRELVKIIDCMAVQKHRV-IPVFYHVNPRDVRHQLGCFKKSFRKHE 120

Query: 121 EALQELDYMERDTYMKEVQQWRRAMT 147
           E LQEL+ MERD YMKEVQQWRRA+T
Sbjct: 121 EILQELNNMERDKYMKEVQQWRRALT 145

[Close]

BLAST of Lsi08G001290 vs. NCBI nr
Match: AAU04764.1 (MRGH9 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 9.1e-61
Identity = 123/146 (84.25%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           M FD FISFRGED RNTF G+LYKELV LGI+ FMDDKKLLIGDSLSEKLI+AIEKS SF
Sbjct: 1   MSFDSFISFRGEDTRNTFTGHLYKELVGLGITTFMDDKKLLIGDSLSEKLIKAIEKSDSF 60

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 120
           IVVLSENYASSKWCLRELAKIIDC  EQKHRVLLPVFYHVNP DVR QSG FE SFR HE
Sbjct: 61  IVVLSENYASSKWCLRELAKIIDCTDEQKHRVLLPVFYHVNPHDVRRQSGCFENSFRLHE 120

Query: 121 EALQELDYMERDTYMKEVQQWRRAMT 147
           E L+ELD+MERD YM+EVQQWRRA T
Sbjct: 121 ELLRELDHMERDKYMEEVQQWRRAFT 146

[Close]

BLAST of Lsi08G001290 vs. NCBI nr
Match: XP_008459546.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 9.1e-61
Identity = 123/146 (84.25%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MRFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSF 60
           M FD FISFRGED RNTF G+LYKELV LGI+ FMDDKKLLIGDSLSEKLI+AIEKS SF
Sbjct: 1   MSFDSFISFRGEDTRNTFTGHLYKELVGLGITTFMDDKKLLIGDSLSEKLIKAIEKSDSF 60

Query: 61  IVVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHE 120
           IVVLSENYASSKWCLRELAKIIDC  EQKHRVLLPVFYHVNP DVR QSG FE SFR HE
Sbjct: 61  IVVLSENYASSKWCLRELAKIIDCTDEQKHRVLLPVFYHVNPHDVRRQSGCFENSFRLHE 120

Query: 121 EALQELDYMERDTYMKEVQQWRRAMT 147
           E L+ELD+MERD YM+EVQQWRRA T
Sbjct: 121 ELLRELDHMERDKYMEEVQQWRRAFT 146

[Close]

BLAST of Lsi08G001290 vs. TAIR 10
Match: AT1G72840.1 (Disease resistance protein (TIR-NBS-LRR class) )

HSP 1 Score: 127.5 bits (319), Expect = 8.9e-30
Identity = 67/145 (46.21%), Postives = 97/145 (66.90%), Query Frame = 0


Query: 3   FDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFIV 62
           +D+F+SFRG D R T + +LY  L   G+  F DD+KL IGD++++ L++AI+ S   +V
Sbjct: 15  YDVFLSFRGVDTRQTIVSHLYVALRNNGVLTFKDDRKLEIGDTIADGLVKAIQTSWFAVV 74

Query: 63  VLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEEA 122
           +LSENYA+S WCL EL  I+   +E++ +V LP+FY V PSDVRYQ GSF  +F+++   
Sbjct: 75  ILSENYATSTWCLEELRLIMQLHSEEQIKV-LPIFYGVKPSDVRYQEGSFATAFQRY--- 134

Query: 123 LQELDYMERDTYMKE-VQQWRRAMT 147
                  E D  M+E V +WRRA+T
Sbjct: 135 -------EADPEMEEKVSKWRRALT 148

[Close]

BLAST of Lsi08G001290 vs. TAIR 10
Match: AT1G72840.2 (Disease resistance protein (TIR-NBS-LRR class) )

HSP 1 Score: 127.5 bits (319), Expect = 8.9e-30
Identity = 67/145 (46.21%), Postives = 97/145 (66.90%), Query Frame = 0


Query: 3   FDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFIV 62
           +D+F+SFRG D R T + +LY  L   G+  F DD+KL IGD++++ L++AI+ S   +V
Sbjct: 15  YDVFLSFRGVDTRQTIVSHLYVALRNNGVLTFKDDRKLEIGDTIADGLVKAIQTSWFAVV 74

Query: 63  VLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEEA 122
           +LSENYA+S WCL EL  I+   +E++ +V LP+FY V PSDVRYQ GSF  +F+++   
Sbjct: 75  ILSENYATSTWCLEELRLIMQLHSEEQIKV-LPIFYGVKPSDVRYQEGSFATAFQRY--- 134

Query: 123 LQELDYMERDTYMKE-VQQWRRAMT 147
                  E D  M+E V +WRRA+T
Sbjct: 135 -------EADPEMEEKVSKWRRALT 148

[Close]

BLAST of Lsi08G001290 vs. TAIR 10
Match: AT1G72860.1 (Disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-29
Identity = 65/145 (44.83%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 2   RFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFI 61
           ++D+F+SFRGED R   + +L+K+LV+ G+  F DDKKL +GDS+SE++ RAI+ S   +
Sbjct: 11  KYDVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDKKLELGDSISEEISRAIQNSTYAL 70

Query: 62  VVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEE 121
           V+LSENYASS WCL EL  ++D   + K +V +P+FY V+PS VR+Q+GSF  +F K+++
Sbjct: 71  VILSENYASSSWCLDELRMVMDLHLKNKIKV-VPIFYGVDPSHVRHQTGSF--TFDKYQD 130

Query: 122 ALQELDYMERDTYMKEVQQWRRAMT 147
           +              +V  WR A+T
Sbjct: 131 SKMP----------NKVTTWREALT 142

[Close]

BLAST of Lsi08G001290 vs. TAIR 10
Match: AT5G40100.1 (Disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-28
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 3   FDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFIV 62
           +D+F+SFRGED R++ + +LY+ L   GI+ F DDK+L +GD +SE+L RAIE S   +V
Sbjct: 12  YDVFLSFRGEDTRHSIVSHLYEALTSRGIATFKDDKRLELGDHISEELQRAIEGSDFVVV 71

Query: 63  VLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEEA 122
           VLSENY +S+WCL EL  I++   E +  V  PVFY V PS VRYQ GSF          
Sbjct: 72  VLSENYPTSRWCLMELQSIMELQMEGRLGV-FPVFYRVEPSAVRYQLGSF---------- 131

Query: 123 LQELDYMERDTYMKE-VQQWRRAM 146
             +L+  +RD  M + V +WR+A+
Sbjct: 132 --DLEGYQRDPQMADMVPKWRQAL 142

[Close]

BLAST of Lsi08G001290 vs. TAIR 10
Match: AT1G17615.1 (Disease resistance protein (TIR-NBS class) )

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-28
Identity = 63/145 (43.45%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 2   RFDIFISFRGEDNRNTFIGYLYKELVELGISIFMDDKKLLIGDSLSEKLIRAIEKSGSFI 61
           +FD+F+SFRG+D R TFI +LYKEL+E+GI  F DD +L  G  ++  L+ AIE S   +
Sbjct: 14  KFDVFLSFRGKDTRRTFISFLYKELIEMGIRTFKDDVELQSGRRIASDLLAAIENSKIAV 73

Query: 62  VVLSENYASSKWCLRELAKIIDCMAEQKHRVLLPVFYHVNPSDVRYQSGSFEKSFRKHEE 121
           V++S+NY++S WCL+EL  I+D + ++   +++P+FY+V P+ VR Q     K FRKHE 
Sbjct: 74  VIISKNYSASPWCLQELVMIMD-VEKKGSIIVMPIFYNVEPAHVRRQIEQVAKQFRKHE- 133

Query: 122 ALQELDYMERDTYMKEVQQWRRAMT 147
                    R+ Y + V  WR+A+T
Sbjct: 134 --------GRENY-ETVVSWRQALT 147

The following BLAST results are available for this feature:

BLAST of Lsi08G001290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A290U7C4	2.8e-28	47.22	Disease resistance protein Roq1 OS=Nicotiana benthamiana OX=4100 GN=ROQ1 PE=1 SV...	[more]
Q40392	1.4e-27	45.45	TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1	[more]
Q40253	6.8e-27	45.38	Disease resistance protein L6 OS=Linum usitatissimum OX=4006 GN=L6 PE=1 SV=1	[more]
V9M2S5	1.2e-26	43.75	Disease resistance protein RPV1 OS=Vitis rotundifolia OX=103349 GN=RPV1 PE=1 SV=...	[more]
V9M398	3.4e-26	43.15	Disease resistance protein RUN1 OS=Vitis rotundifolia OX=103349 GN=RUN1 PE=1 SV=...	[more]

BLAST of Lsi08G001290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q5DMW2	4.4e-61	84.25	MRGH9 OS=Cucumis melo OX=3656 GN=MRGH9 PE=4 SV=1	[more]
A0A1S3C9Z0	4.4e-61	84.25	TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498649 PE=4 SV=1	[more]
M4QSV9	1.3e-60	82.88	Fom-1 OS=Cucumis melo OX=3656 GN=Fom-1 PE=4 SV=1	[more]
A0A5A7T771	1.7e-60	83.56	Fom-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001170 PE=4 SV...	[more]
A0A0A0KSR1	2.2e-52	77.08	TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G647570 PE=4 SV...	[more]

BLAST of Lsi08G001290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891070.1	3.1e-61	85.62	disease resistance protein RPV1-like isoform X1 [Benincasa hispida] >XP_03889107...	[more]
XP_038891076.1	3.1e-61	85.62	disease resistance protein RPV1-like isoform X3 [Benincasa hispida] >XP_03889107...	[more]
XP_038891073.1	3.1e-61	85.62	disease resistance protein RPV1-like isoform X2 [Benincasa hispida] >XP_03889107...	[more]
AAU04764.1	9.1e-61	84.25	MRGH9 [Cucumis melo]	[more]
XP_008459546.1	9.1e-61	84.25	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]

BLAST of Lsi08G001290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72840.1	8.9e-30	46.21	Disease resistance protein (TIR-NBS-LRR class)	[more]
AT1G72840.2	8.9e-30	46.21	Disease resistance protein (TIR-NBS-LRR class)	[more]
AT1G72860.1	2.0e-29	44.83	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT5G40100.1	2.9e-28	46.53	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G17615.1	4.9e-28	43.45	Disease resistance protein (TIR-NBS class)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	SMART	SM00255	till_3	coord: 2..141 e-value: 2.6E-33 score: 126.6
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PFAM	PF01582	TIR	coord: 3..128 e-value: 1.9E-38 score: 132.0
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PROSITE	PS50104	TIR	coord: 1..146 score: 31.768976
IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	GENE3D	3.40.50.10140		coord: 1..146 e-value: 6.1E-53 score: 181.0
IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	SUPERFAMILY	52200	Toll/Interleukin receptor TIR domain	coord: 2..146
None	No IPR available	PANTHER	PTHR32009:SF84	TOLL/INTERLEUKIN-LIKE RECEPTOR-PROTEIN	coord: 2..145
None	No IPR available	PANTHER	PTHR32009	TMV RESISTANCE PROTEIN N-LIKE	coord: 2..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G001290.1	Lsi08G001290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity