Lsi07G012510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G012510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	E3 ubiquitin-protein ligase RNF34
Location	chr07: 18242882 .. 18245788 (+)
RNA-Seq Expression	Lsi07G012510
Synteny	Lsi07G012510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACTTTATTTTTCCTATCCTTGGGAGCAGCATTTGTCAGACTTTTTGTTCTTAAACCCTATTTCACCTTCAGCTCCCCCTCCCTCCCCTTTCCAGCCACTGCACCTCGCGCCACCGCACGCCGTCTCAGTGGGTGCCGCAATCTCAGCCTTCCCACGAAATCGCCGCCGCTGCCTCCCTCATTCCAAATTCAAGGGTTCCAACACAGGGGTTACAACGAAAAACAATTCCCATTGGAACGATCTTTCGTCCCCAAACCAATTTCTTGGCTCTACTGAAGGCGAACAGTTTCTCGGCGACTCTTCTTCAGCTCTCTTTTCCTTTCTCACAGTCGTGGGAAAGTGCTTCCGGCCGGCGCCCGGCCTTTGCAGTTGTGACTATCTCTATTTCTGGGACAAAACGCAGGTTCATCCGACTTTCTCTGCCCCTCAATATTTCAATTTATTTATTTGCCTCTCTAGCCTTATTGTGATTTCTTCTAAATTCAATGGATGAAGGACTTCTTTTTCTTTACAGCTAGAAGACGGGAAAGATGCGGCATGCTAGCAAGGATCTTTTGTATTTGGAGCGGAAGGATTTTTCCTCTTCGTCTTTAGGTATTTTATGGTCGAATTTTCTCCGTTTTAGCCTATATTGAATGTTAGGATTAGTAATAGTTTATAGACTATTTTTTGCCTTATATCAGAGTCCTCACTGCTAGTTTGTAAAAAGAACTCGACGTCCAAGGAGCCCTGTCGGAATGAAAAACCCATTACCGAACCAGCTTCAAAAAGCCTAGGTACATACTTCCCTTTTGATTTTTTGCTGCTTATTTTACTTTGAAATCTGGACACGAGCTTAGAATTTTTACTGCATTGACATTTAGCAGGCTAATTGCGGACATGGGCACATCTGTTGATTCATAATTTCAACTGTCTTCACTAGTTTTGTGTTTAATGTTGGCTAGATCCTAAAGTTTAGGAAATTTTAGATTAGTCAAACAGTACAATTATTTGACTAAGGGTCCTCTTCCTGAAAAATACTTAGCCAACCTTGTGCATCTCATCTAATTGTTCATTCATAACTTATCACGTGGCAAACACTTTTTACTTCTTTTTTAAATATATTTAAATATATTTTTTTTGTTTTGTTTTATTAGAGTGAGATGCAGCGATTCACAAAGATGGATTCATCTTGAAATGCACCAAAGTATTGTTGAATAAATATTATTGTAAAATAAGAACTTTGCTTGACATGTATGTCTGATGGCTGGTTAGGAAATACTCACTGGTTGATACCCTATCTTGGTTTTCTCGTTGTCCGGAAATATATTGGATTTTTTTAGTGCAATTTTTTTTAGCTTTTGCAAGTTGTGTTGTTTTCTCATATGCAATTGATCAGACGAATTTCCAGTTGCTGTTTTAAAACTTTGAACTTTCTAGCACTATTATGAGATATTGCCTTCGAGAGAGCAGAGCATTAGTATTAAAATGGTGCTATTGTTTTGTTGCGGGCATAGAACAAATTGATTCCTTTCTCTACTTTTTTCGACATATAAGTTTGATTCTTCGTCAAGCAGTTTGCAGTTTTGATGAGGGGAAGGATTTTTTTCATTCGTTGCCTTTTTTCCTTTATAGCACTATTATGAGATGTAATGTGGAGGTTGTTTATAGCATCTGTTTCCCACTACATATCTTCTTGCACTTTCAGCTGGAAACTTACCTCTCCCTTTTATGTCATTTGAAGTAAGAAAATTTCTTTGAGTGCTACATTTGGAACATGGAACATTCAGCATCAAATTTGAAAATATTATGGTGCTTGTTTCTTTTTAGGAGTTGCAAACGTTGCTCACTTGCTTTTCACTTATTGTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGTTTGAATATTGACCAATTACAACTTAAATTTGAATCTAAACACAAAAAGCTTTCATTGTTCCTGATCTATACATTCTTGCTAATTTTCATAGGAAAATGCTGAAAAATATGATATTGAAGCCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGTAATTCACTTTTCCTTGTAATGTTGTGTCGTGGATTTGGTAGTTTGGTTCTTCATCATTCATAATGTCCTGATTTGATCTAAACAGGACCTGATGTTGGGTATTGCCGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCAGAGTCTGAAGAAAGTAGTGATGATAGCATTACCAGTGACGACAATAACGATGACAATGAAAAGAGCGACGATCAGAATACTGACCACAGTAACAGATCGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAAGAGCCATCTTTTGATCACGCCTGTCGTCTCAATATGGATGCGCCGTTATGGTTTTAGAGTTTTATTCACGATCGGTGTCATTGGGGGGGAGTATATGAAGTTTCTGAAGCTTGCACTGACAAAATCTCCAAGATTGATTGCGAGCCTAATCCTTTAAGCGTGGGCGGTAGGAAGCAATCTTGCTCGACCTTACAATTTCAAGTTATTTCTCTATGGCTTCGACCTTATGATATCAAGTTATTTCTCTCTTCACCATTATCATGATTTCAATTGTAGGGAAGATGCTGTCTTTATGCATTTCTATTAGGAACTCTAATATAAATTTTGTAATTAGTCTTGGTCAGTTTGCCAATTTTGGTTTGTATACTTGATGTCAGACTTCGATACTTCAAAAATGGCCATTTTTTTTCCACTTGAGCATG

mRNA sequence

AAAAACTTTATTTTTCCTATCCTTGGGAGCAGCATTTGTCAGACTTTTTGTTCTTAAACCCTATTTCACCTTCAGCTCCCCCTCCCTCCCCTTTCCAGCCACTGCACCTCGCGCCACCGCACGCCGTCTCAGTGGGTGCCGCAATCTCAGCCTTCCCACGAAATCGCCGCCGCTGCCTCCCTCATTCCAAATTCAAGGGTTCCAACACAGGGGTTACAACGAAAAACAATTCCCATTGGAACGATCTTTCGTCCCCAAACCAATTTCTTGGCTCTACTGAAGGCGAACAGTTTCTCGGCGACTCTTCTTCAGCTCTCTTTTCCTTTCTCACAGTCGTGGGAAAGTGCTTCCGGCCGGCGCCCGGCCTTTGCAGTTGTGACTATCTCTATTTCTGGGACAAAACGCAGCTAGAAGACGGGAAAGATGCGGCATGCTAGCAAGGATCTTTTGTATTTGGAGCGGAAGGATTTTTCCTCTTCGTCTTTAGAGTCCTCACTGCTAGTTTGTAAAAAGAACTCGACGTCCAAGGAGCCCTGTCGGAATGAAAAACCCATTACCGAACCAGCTTCAAAAAGCCTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGAAAATGCTGAAAAATATGATATTGAAGCCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGTTGGGTATTGCCGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCAGAGTCTGAAGAAAGTAGTGATGATAGCATTACCAGTGACGACAATAACGATGACAATGAAAAGAGCGACGATCAGAATACTGACCACAGTAACAGATCGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAAGAGCCATCTTTTGATCACGCCTGTCGTCTCAATATGGATGCGCCGTTATGGTTTTAGAGTTTTATTCACGATCGGTGTCATTGGGGGGGAGTATATGAAGTTTCTGAAGCTTGCACTGACAAAATCTCCAAGATTGATTGCGAGCCTAATCCTTTAAGCGTGGGCGGTAGGAAGCAATCTTGCTCGACCTTACAATTTCAAGTTATTTCTCTATGGCTTCGACCTTATGATATCAAGTTATTTCTCTCTTCACCATTATCATGATTTCAATTGTAGGGAAGATGCTGTCTTTATGCATTTCTATTAGGAACTCTAATATAAATTTTGTAATTAGTCTTGGTCAGTTTGCCAATTTTGGTTTGTATACTTGATGTCAGACTTCGATACTTCAAAAATGGCCATTTTTTTTCCACTTGAGCATG

Coding sequence (CDS)

ATGCGGCATGCTAGCAAGGATCTTTTGTATTTGGAGCGGAAGGATTTTTCCTCTTCGTCTTTAGAGTCCTCACTGCTAGTTTGTAAAAAGAACTCGACGTCCAAGGAGCCCTGTCGGAATGAAAAACCCATTACCGAACCAGCTTCAAAAAGCCTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGAAAATGCTGAAAAATATGATATTGAAGCCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGTTGGGTATTGCCGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCAGAGTCTGAAGAAAGTAGTGATGATAGCATTACCAGTGACGACAATAACGATGACAATGAAAAGAGCGACGATCAGAATACTGACCACAGTAACAGATCGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAA

Protein sequence

MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILELS

Homology

[Close]

BLAST of Lsi07G012510 vs. ExPASy TrEMBL
Match: A0A5D3CJH5 (E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00670 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.6e-85
Identity = 185/202 (91.58%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL+LERKD S+SSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENA+KYDIEALDGNESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKT 180
           GN PVIPLTCSSSESESEESSDDSITSD +N+DNEKSDDQNTD SNR SVKLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 203
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Lsi07G012510 vs. ExPASy TrEMBL
Match: A0A1S3BJW4 (uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.6e-85
Identity = 185/202 (91.58%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL+LERKD S+SSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENA+KYDIEALDGNESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKT 180
           GN PVIPLTCSSSESESEESSDDSITSD +N+DNEKSDDQNTD SNR SVKLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 203
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Lsi07G012510 vs. ExPASy TrEMBL
Match: A0A0A0L448 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.9e-85
Identity = 186/202 (92.08%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDF 60
           MRH SKDLLYLERKD SSSSLESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRVKDF
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENAEKYDIEALDGNESEVI+LDLMLGIADLHTPEAV AAESAII
Sbjct: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120

Query: 121 GNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKT 180
           GN PVIPLTCSSSESESEESSDDSITSD +NDDNEKSDDQ TD SNR SVKLKRSNSRKT
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 203
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Lsi07G012510 vs. ExPASy TrEMBL
Match: A0A6J1KZJ8 (uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498503 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 5.5e-78
Identity = 175/206 (84.95%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL LERKD  SSSLESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+DAK++AEKYDIEAL+GNESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTC----SSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSN 180
           GNQPVIPL C    SSSESESEESSDDSITSD+N++DNEKSD QNTD  NR SVKLKRS 
Sbjct: 121 GNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKLKRSK 180

Query: 181 SRKTSCRSKSKGKGKLKKRPKILELS 203
           SR+ +CRS+S+ KGK  KRPKILELS
Sbjct: 181 SRRANCRSESREKGKSNKRPKILELS 206

[Close]

BLAST of Lsi07G012510 vs. ExPASy TrEMBL
Match: A0A6J1F913 (uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443185 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77
Identity = 175/205 (85.37%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL LERKD  SSS ESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+DAK++AEKYDIEAL+G+ESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTCSSS---ESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNS 180
           GNQPVI L CSSS   ESESEESSDDSITSD+N+DDNEKSD+QNTD  NR SVKLKR  S
Sbjct: 121 GNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKS 180

Query: 181 RKTSCRSKSKGKGKLKKRPKILELS 203
           RKT+CRS+SK KGK  KRPKILELS
Sbjct: 181 RKTNCRSESKEKGKSNKRPKILELS 205

[Close]

BLAST of Lsi07G012510 vs. NCBI nr
Match: XP_038903017.1 (uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 uncharacterized protein LOC120089721 [Benincasa hispida])

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-86
Identity = 193/203 (95.07%), Postives = 197/203 (97.04%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDF 60
           MRH SKDLLYLERKD SSSSLESSLLVCKKNSTSKEP RNEKPITEPASKSLVLGRVKDF
Sbjct: 1   MRH-SKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPRRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMDAK+NAEKYDIEALDGNES+VIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDAKDNAEKYDIEALDGNESKVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTC-SSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRK 180
           GNQPVIPLTC SSSESESEESSDDSITS+DNNDDNEKSDDQNTDHSNRSSVKLKRSNSRK
Sbjct: 121 GNQPVIPLTCSSSSESESEESSDDSITSNDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRK 180

Query: 181 TSCRSKSKGKGKLKKRPKILELS 203
           TSCRSKSKGK K +KRPKILELS
Sbjct: 181 TSCRSKSKGKSKSEKRPKILELS 202

[Close]

BLAST of Lsi07G012510 vs. NCBI nr
Match: XP_008448773.1 (PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo] >KAA0041045.1 E3 ubiquitin-protein ligase RNF34 [Cucumis melo var. makuwa] >TYK12053.1 E3 ubiquitin-protein ligase RNF34 [Cucumis melo var. makuwa])

HSP 1 Score: 324.3 bits (830), Expect = 7.3e-85
Identity = 185/202 (91.58%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL+LERKD S+SSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENA+KYDIEALDGNESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKT 180
           GN PVIPLTCSSSESESEESSDDSITSD +N+DNEKSDDQNTD SNR SVKLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 203
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Lsi07G012510 vs. NCBI nr
Match: XP_004147238.2 (uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 1.6e-84
Identity = 186/202 (92.08%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDF 60
           MRH SKDLLYLERKD SSSSLESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRVKDF
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVISEANKKLQMD+KENAEKYDIEALDGNESEVI+LDLMLGIADLHTPEAV AAESAII
Sbjct: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120

Query: 121 GNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKT 180
           GN PVIPLTCSSSESESEESSDDSITSD +NDDNEKSDDQ TD SNR SVKLKRSNSRKT
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180

Query: 181 SCRSKSKGKGKLKKRPKILELS 203
           SCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Lsi07G012510 vs. NCBI nr
Match: XP_011650372.1 (uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus] >KGN55834.2 hypothetical protein Csa_010190 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 9.0e-83
Identity = 186/206 (90.29%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSL----ESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGR 60
           MRH SKDLLYLERKD SSSSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAE 120
           VKDFLGVISEANKKLQMD+KENAEKYDIEALDGNESEVI+LDLMLGIADLHTPEAV AAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 121 SAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSN 180
           SAIIGN PVIPLTCSSSESESEESSDDSITSD +NDDNEKSDDQ TD SNR SVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKLKKRPKILELS 203
           SRKTSCRSKSKGKGK KKRPKI  LS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206

[Close]

BLAST of Lsi07G012510 vs. NCBI nr
Match: XP_023005549.1 (uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima])

HSP 1 Score: 300.4 bits (768), Expect = 1.1e-77
Identity = 175/206 (84.95%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDF 60
           MRHASKDLL LERKD  SSSLESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+DAK++AEKYDIEAL+GNESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLTC----SSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSN 180
           GNQPVIPL C    SSSESESEESSDDSITSD+N++DNEKSD QNTD  NR SVKLKRS 
Sbjct: 121 GNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKLKRSK 180

Query: 181 SRKTSCRSKSKGKGKLKKRPKILELS 203
           SR+ +CRS+S+ KGK  KRPKILELS
Sbjct: 181 SRRANCRSESREKGKSNKRPKILELS 206

[Close]

BLAST of Lsi07G012510 vs. TAIR 10
Match: AT1G71430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24
Identity = 74/141 (52.48%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 6   KDLLYLERKDFSSSS-LESSLLVC---KKNSTSKEPCRNEKPITEPASKSLVLGRVKDFL 65
           KDLL LE K+ SSSS ++S+LL+C    K     E     KP   P  KS +LG++K FL
Sbjct: 8   KDLLKLELKNPSSSSAMDSALLMCTDKNKKKKKMEAPPPSKPTIAPVPKSQLLGKLKGFL 67

Query: 66  GVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPEAVAAAESAIIG 125
           GV++EANKK    ++ N E Y+IEAL GNESE+IE+DLMLG+ADL+TPEAV+AAE+AI G
Sbjct: 68  GVMAEANKK----SEANPEAYNIEALTGNESELIEMDLMLGVADLNTPEAVSAAEAAIAG 127

Query: 126 NQPVIPLTCSSSESESEESSD 143
             P      SSS+ ES+  S+
Sbjct: 128 IGPAAESGDSSSDDESDSESE 144

The following BLAST results are available for this feature:

BLAST of Lsi07G012510 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G012510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJH5	3.6e-85	91.58	E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BJW4	3.6e-85	91.58	uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=...	[more]
A0A0A0L448	7.9e-85	92.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1	[more]
A0A6J1KZJ8	5.5e-78	84.95	uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F913	1.6e-77	85.37	uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lsi07G012510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903017.1	1.0e-86	95.07	uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 unchara...	[more]
XP_008448773.1	7.3e-85	91.58	PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo] >KAA0041045.1 E3 ...	[more]
XP_004147238.2	1.6e-84	92.08	uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]	[more]
XP_011650372.1	9.0e-83	90.29	uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus] >KGN55834.2 hy...	[more]
XP_023005549.1	1.1e-77	84.95	uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]	[more]

BLAST of Lsi07G012510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71430.1	1.2e-24	52.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027921	NOP protein chaperone 1	PFAM	PF15370	DUF4598	coord: 54..200 e-value: 7.2E-16 score: 58.6
IPR027921	NOP protein chaperone 1	PANTHER	PTHR28674	SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSED	coord: 2..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G012510.1	Lsi07G012510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000492	box C/D snoRNP assembly
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0062064	box C/D snoRNP complex binding