Lsi07G011650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G011650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr07: 17106420 .. 17106928 (-)
RNA-Seq Expression	Lsi07G011650
Synteny	Lsi07G011650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATATCCGGGCGCGGGTCGCGCACGTCCCGACCCGAAACCGTTCATCGCTTTGCCACCTACAGTTCAGTATAGTCAGGTCGCGGCAAGCTGAGGCGGTAACACATTTCCTTCAGGTTTTTTCTTTGATTAACAATCGCATCACTTTCAGAGTTCAATCGAGAATATGGGGCTAGACAGAATGTATTGGGATGATTCCATGATTGTCAAAGCCATGGATGAAGCTATGTTGAAGTATAAGGTTTTCTATCTCTCTATCTCTACCCATCTGCTAATTCTCTTTTCGAAGTGTCTAAAAAGTGCTGTTTTAATTCGTCAGTCTTGGTTTGTGTTGAGTTTCTTTAAACTATTTGATTTGTGGGTTACATCAGATCAAACGTTGCCGTTTTTCAGATAATGCATGGACATGAAGTCCCCTGTGTTTCAGCCGAGGGAGGAGGAGTTGTAAATGGTTGCGGTAAGAGTGAAGAGAAAGAGACGAAAAGGTCCGTAGCTTCCTGGCCATAG

mRNA sequence

ATGAAATATCCGGGCGCGGGTCGCGCACGTCCCGACCCGAAACCGTTCATCGCTTTGCCACCTACAGTTCAGTATAGTCAGAGTTCAATCGAGAATATGGGGCTAGACAGAATGTATTGGGATGATTCCATGATTGTCAAAGCCATGGATGAAGCTATGTTGAAGTATAAGATAATGCATGGACATGAAGTCCCCTGTGTTTCAGCCGAGGGAGGAGGAGTTGTAAATGGTTGCGGTAAGAGTGAAGAGAAAGAGACGAAAAGGTCCGTAGCTTCCTGGCCATAG

Coding sequence (CDS)

ATGAAATATCCGGGCGCGGGTCGCGCACGTCCCGACCCGAAACCGTTCATCGCTTTGCCACCTACAGTTCAGTATAGTCAGAGTTCAATCGAGAATATGGGGCTAGACAGAATGTATTGGGATGATTCCATGATTGTCAAAGCCATGGATGAAGCTATGTTGAAGTATAAGATAATGCATGGACATGAAGTCCCCTGTGTTTCAGCCGAGGGAGGAGGAGTTGTAAATGGTTGCGGTAAGAGTGAAGAGAAAGAGACGAAAAGGTCCGTAGCTTCCTGGCCATAG

Protein sequence

MKYPGAGRARPDPKPFIALPPTVQYSQSSIENMGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSVASWP

Homology

[Close]

BLAST of Lsi07G011650 vs. ExPASy TrEMBL
Match: A0A1S4DXH8 (uncharacterized protein LOC103490751 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490751 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.2e-20
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          MGLD+MYWD+SMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVN CGKS+  E KRSV
Sbjct: 1  MGLDKMYWDNSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNDCGKSD--ELKRSV 56

[Close]

BLAST of Lsi07G011650 vs. ExPASy TrEMBL
Match: A0A1S4DXI5 (uncharacterized protein LOC103490751 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490751 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.2e-20
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          MGLD+MYWD+SMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVN CGKS+  E KRSV
Sbjct: 1  MGLDKMYWDNSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNDCGKSD--ELKRSV 56

[Close]

BLAST of Lsi07G011650 vs. ExPASy TrEMBL
Match: A0A1S3BL18 (uncharacterized protein LOC103490751 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490751 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.2e-20
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          MGLD+MYWD+SMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVN CGKS+  E KRSV
Sbjct: 1  MGLDKMYWDNSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNDCGKSD--ELKRSV 56

[Close]

BLAST of Lsi07G011650 vs. ExPASy TrEMBL
Match: A0A0A0L6D7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008290 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          MGLD+MYWDDSMIVKAMDEAM KYKIMHGHEVP VS+EGGGVVNGCGKS+  E KRSV
Sbjct: 1  MGLDKMYWDDSMIVKAMDEAMWKYKIMHGHEVPRVSSEGGGVVNGCGKSD--ELKRSV 56

[Close]

BLAST of Lsi07G011650 vs. ExPASy TrEMBL
Match: A0A6J1HK48 (uncharacterized protein LOC111465241 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465241 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          M LDRMYWDDSMIVKAMDEAMLKYK MHG+++  VSAEGGGV NGCGKS+  E +RSV
Sbjct: 1  MELDRMYWDDSMIVKAMDEAMLKYKTMHGYDIRRVSAEGGGVFNGCGKSD--EPRRSV 56

[Close]

BLAST of Lsi07G011650 vs. NCBI nr
Match: XP_016900686.1 (PREDICTED: uncharacterized protein LOC103490751 isoform X1 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          MGLD+MYWD+SMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVN CGKS+  E KRSV
Sbjct: 1  MGLDKMYWDNSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNDCGKSD--ELKRSV 56

[Close]

BLAST of Lsi07G011650 vs. NCBI nr
Match: XP_016900687.1 (PREDICTED: uncharacterized protein LOC103490751 isoform X2 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          MGLD+MYWD+SMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVN CGKS+  E KRSV
Sbjct: 1  MGLDKMYWDNSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNDCGKSD--ELKRSV 56

[Close]

BLAST of Lsi07G011650 vs. NCBI nr
Match: XP_008448638.1 (PREDICTED: uncharacterized protein LOC103490751 isoform X3 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          MGLD+MYWD+SMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVN CGKS+  E KRSV
Sbjct: 1  MGLDKMYWDNSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNDCGKSD--ELKRSV 56

[Close]

BLAST of Lsi07G011650 vs. NCBI nr
Match: XP_004150665.1 (uncharacterized protein LOC101203762 isoform X2 [Cucumis sativus] >KGN55721.1 hypothetical protein Csa_010161 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          MGLD+MYWDDSMIVKAMDEAM KYKIMHGHEVP VS+EGGGVVNGCGKS+  E KRSV
Sbjct: 1  MGLDKMYWDDSMIVKAMDEAMWKYKIMHGHEVPRVSSEGGGVVNGCGKSD--ELKRSV 56

[Close]

BLAST of Lsi07G011650 vs. NCBI nr
Match: XP_031739471.1 (uncharacterized protein LOC101203762 isoform X1 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 33 MGLDRMYWDDSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNGCGKSEEKETKRSV 91
          MGLD+MYWDDSMIVKAMDEAM KYKIMHGHEVP VS+EGGGVVNGCGKS+  E KRSV
Sbjct: 1  MGLDKMYWDDSMIVKAMDEAMWKYKIMHGHEVPRVSSEGGGVVNGCGKSD--ELKRSV 56

The following BLAST results are available for this feature:

BLAST of Lsi07G011650 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G011650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXH8	9.2e-20	87.93	uncharacterized protein LOC103490751 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DXI5	9.2e-20	87.93	uncharacterized protein LOC103490751 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BL18	9.2e-20	87.93	uncharacterized protein LOC103490751 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L6D7	1.0e-18	86.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008290 PE=4 SV=1	[more]
A0A6J1HK48	1.8e-15	77.59	uncharacterized protein LOC111465241 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi07G011650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900686.1	1.9e-19	87.93	PREDICTED: uncharacterized protein LOC103490751 isoform X1 [Cucumis melo]	[more]
XP_016900687.1	1.9e-19	87.93	PREDICTED: uncharacterized protein LOC103490751 isoform X2 [Cucumis melo]	[more]
XP_008448638.1	1.9e-19	87.93	PREDICTED: uncharacterized protein LOC103490751 isoform X3 [Cucumis melo]	[more]
XP_004150665.1	2.1e-18	86.21	uncharacterized protein LOC101203762 isoform X2 [Cucumis sativus] >KGN55721.1 hy...	[more]
XP_031739471.1	2.1e-18	86.21	uncharacterized protein LOC101203762 isoform X1 [Cucumis sativus]	[more]

BLAST of Lsi07G011650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011650.1	Lsi07G011650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus