Lsi07G010980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G010980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	thaumatin-like protein 1
Location	chr07: 16389180 .. 16389771 (-)
RNA-Seq Expression	Lsi07G010980
Synteny	Lsi07G010980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTAATATCTTTATTCAGCTATGTTCAAAGTAACAACAATCTACATAAGTTTAATTTTTTAAAAATTGAGAGAATAAAATTGACCTTTTAAAAAGTGGGAGGACATTGAAAAAGTAGTAGGAATTTGAGTAGCAAAGTGATTCTAACCATTTGTTCACATTGGATTCTTTGCAGCTTAAAATCATCAACAGATTCATCGCCAAGGACGGCGGCAGCTGGAACAGGGGCGGCAACCGCCGGGGTGGTGGCACAGACGACACCGCTGCCCGAAAGTTCATGGATGGCAGATTTGGCCATTGGAGGCTCAACCAGAATTCACCCAGCTGATTTGTTTTTTCTCCTGTTTGTGTTAATTTTTGGAAGCTCTTTATTCTTCTCATTTCTAAATTTATTTTCATCTTAGCATTAAAATTTTAAAGTCCCATAATGAAGAGATTGATGATTTGGAGAAACAAATGGATTCAAATTTCATATCACCAAAAGAAAGAAAAAAAGTTCCATTTTTCTACCATTTTCAAGAAGTAAATTTGTGTATATAAAAATATTGTAAGCATTATTTTTTTGCAAAAAGAAAGCCTTTCTAGTT

mRNA sequence

ATGGTAATTAATATCTTTATTCAGCTATGTTCAAACTTAAAATCATCAACAGATTCATCGCCAAGGACGGCGGCAGCTGGAACAGGGGCGGCAACCGCCGGGGTGGTGGCACAGACGACACCGCTGCCCGAAAGTTCATGGATGGCAGATTTGGCCATTGGAGGCTCAACCAGAATTCACCCAGCTGATTTGTTTTTTCTCCTGTTTGTGTTAATTTTTGGAAGCTCTTTATTCTTCTCATTTCTAAATTTATTTTCATCTTAGCATTAAAATTTTAAAGTCCCATAATGAAGAGATTGATGATTTGGAGAAACAAATGGATTCAAATTTCATATCACCAAAAGAAAGAAAAAAAGTTCCATTTTTCTACCATTTTCAAGAAGTAAATTTGTGTATATAAAAATATTGTAAGCATTATTTTTTTGCAAAAAGAAAGCCTTTCTAGTT

Coding sequence (CDS)

ATGGTAATTAATATCTTTATTCAGCTATGTTCAAACTTAAAATCATCAACAGATTCATCGCCAAGGACGGCGGCAGCTGGAACAGGGGCGGCAACCGCCGGGGTGGTGGCACAGACGACACCGCTGCCCGAAAGTTCATGGATGGCAGATTTGGCCATTGGAGGCTCAACCAGAATTCACCCAGCTGATTTGTTTTTTCTCCTGTTTGTGTTAATTTTTGGAAGCTCTTTATTCTTCTCATTTCTAAATTTATTTTCATCTTAG

Protein sequence

MVINIFIQLCSNLKSSTDSSPRTAAAGTGAATAGVVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFVLIFGSSLFFSFLNLFSS

Homology

[Close]

BLAST of Lsi07G010980 vs. ExPASy TrEMBL
Match: E5RDD8 (Zeamatin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 12  NLKSSTDSSPRTAAAGTGAATAGVVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFVL 71
           +LKSSTDSSPRT    TG  TAGVVAQ TPLP+SSWMAD+AIGGSTR +  DL FLLFVL
Sbjct: 249 SLKSSTDSSPRTTTTTTG--TAGVVAQMTPLPDSSWMADMAIGGSTRTYSTDLSFLLFVL 308

Query: 72  IFGSSL-FFSFLNLFSS 88
           IFGSSL FFS LNLFSS
Sbjct: 309 IFGSSLVFFSSLNLFSS 323

[Close]

BLAST of Lsi07G010980 vs. ExPASy TrEMBL
Match: A0A1S3BJX4 (thaumatin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103490690 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 12  NLKSSTDSSPRTAAAGTGAATAGVVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFVL 71
           +LKSSTDSSPRT    TG  TAGVVAQ TPLP+SSWMAD+AIGGSTR +  DL FLLFVL
Sbjct: 249 SLKSSTDSSPRTTTTTTG--TAGVVAQMTPLPDSSWMADMAIGGSTRTYSTDLSFLLFVL 308

Query: 72  IFGSSL-FFSFLNLFSS 88
           IFGSSL FFS LNLFSS
Sbjct: 309 IFGSSLVFFSSLNLFSS 323

[Close]

BLAST of Lsi07G010980 vs. ExPASy TrEMBL
Match: A0A6J1GBA8 (thaumatin-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111452577 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 12  NLKSSTDSSPRTAAAGTGAATAG-VVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFV 71
           +LKSSTDS P+  AAG GAAT G VV Q  PLPE+SW+AD+AIG STR HP    FL+FV
Sbjct: 250 SLKSSTDSPPK--AAGAGAATGGTVVGQMVPLPENSWLADMAIGDSTRTHP-HFGFLIFV 309

Query: 72  LIFGSSLFFSFLNLFSS 88
           LIFGSS FFS+ NLFSS
Sbjct: 310 LIFGSSFFFSYSNLFSS 323

[Close]

BLAST of Lsi07G010980 vs. ExPASy TrEMBL
Match: A0A6J1KWD3 (thaumatin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111498786 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-13
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 12  NLKSSTDSSPRTAAAGTGAATAG-VVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFV 71
           +LKSSTDS P+  AAG GAA+ G VV Q  PLPE+SW+AD+AIG STR HP    FLLFV
Sbjct: 250 SLKSSTDSPPK--AAGAGAASGGTVVGQMVPLPENSWLADMAIGDSTRTHP-HFGFLLFV 309

Query: 72  LIFGSSLFFSFLNLFSS 88
           LIFGSS FFS+ NLFSS
Sbjct: 310 LIFGSSFFFSYSNLFSS 323

[Close]

BLAST of Lsi07G010980 vs. ExPASy TrEMBL
Match: A0A0A0L119 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002750 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 12  NLKSSTDSSPRTAAAGTGAATAGVVAQTT-PLPESSWMADLAIGGSTRIHPADLFFLLFV 71
           +LKSSTDS P+T        T GVVAQTT PLPESSW+ D+A+GGSTR H  D+ FLLFV
Sbjct: 242 SLKSSTDSPPKTT-----TGTTGVVAQTTMPLPESSWLVDMAMGGSTRTHQVDVSFLLFV 301

Query: 72  LIFGSSLFF 80
           LIFGSSL F
Sbjct: 302 LIFGSSLVF 305

[Close]

BLAST of Lsi07G010980 vs. NCBI nr
Match: XP_038876615.1 (thaumatin-like protein 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 12  NLKSSTDSSPRTAAAGTGAATAGVVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFVL 71
           +LKSSTDSSPRT A GTG  TAG V QTT LPE+SW+ADLAIG STR HP DL FLLFVL
Sbjct: 250 SLKSSTDSSPRT-ATGTGTTTAGAVEQTTSLPENSWLADLAIGDSTRTHPNDLSFLLFVL 309

Query: 72  IFGSSLFFSFLNLFSS 88
           IFGSS FFSFL+ FSS
Sbjct: 310 IFGSSFFFSFLDFFSS 324

[Close]

BLAST of Lsi07G010980 vs. NCBI nr
Match: XP_008448548.1 (PREDICTED: thaumatin-like protein 1 [Cucumis melo] >ADN33946.1 zeamatin precursor [Cucumis melo subsp. melo])

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 12  NLKSSTDSSPRTAAAGTGAATAGVVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFVL 71
           +LKSSTDSSPRT    TG  TAGVVAQ TPLP+SSWMAD+AIGGSTR +  DL FLLFVL
Sbjct: 249 SLKSSTDSSPRTTTTTTG--TAGVVAQMTPLPDSSWMADMAIGGSTRTYSTDLSFLLFVL 308

Query: 72  IFGSSL-FFSFLNLFSS 88
           IFGSSL FFS LNLFSS
Sbjct: 309 IFGSSLVFFSSLNLFSS 323

[Close]

BLAST of Lsi07G010980 vs. NCBI nr
Match: XP_023539979.1 (thaumatin-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 12  NLKSSTDSSPRTAAAGTGAATAG-VVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFV 71
           +LKSSTDS P+T  AG GAAT G VV Q  PLPE+SW+AD+AIG STR HP    FLLFV
Sbjct: 250 SLKSSTDSPPKT--AGAGAATGGTVVGQMVPLPENSWLADMAIGDSTRTHP-HFGFLLFV 309

Query: 72  LIFGSSLFFSFLNLFSS 88
           LIFGSS FFS+ NLFSS
Sbjct: 310 LIFGSSFFFSYSNLFSS 323

[Close]

BLAST of Lsi07G010980 vs. NCBI nr
Match: KAG7028202.1 (hypothetical protein SDJN02_09382 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 55/83 (66.27%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 6   FIQLCSNLKSSTDSSPRTAAAGTGAATAG-VVAQTTPLPESSWMADLAIGGSTRIHPADL 65
           F     +LKSSTDS P+  AAG GAAT G VV Q  PLPE+SW+AD+AIG STR HP   
Sbjct: 244 FCSSSPSLKSSTDSPPK--AAGAGAATGGTVVGQMVPLPENSWLADMAIGDSTRTHP-HF 303

Query: 66  FFLLFVLIFGSSLFFSFLNLFSS 88
            FLLFVLIFGSS FFS+ NLFSS
Sbjct: 304 GFLLFVLIFGSSFFFSYSNLFSS 323

[Close]

BLAST of Lsi07G010980 vs. NCBI nr
Match: XP_022949172.1 (thaumatin-like protein 1 [Cucurbita moschata])

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-13
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 12  NLKSSTDSSPRTAAAGTGAATAG-VVAQTTPLPESSWMADLAIGGSTRIHPADLFFLLFV 71
           +LKSSTDS P+  AAG GAAT G VV Q  PLPE+SW+AD+AIG STR HP    FL+FV
Sbjct: 250 SLKSSTDSPPK--AAGAGAATGGTVVGQMVPLPENSWLADMAIGDSTRTHP-HFGFLIFV 309

Query: 72  LIFGSSLFFSFLNLFSS 88
           LIFGSS FFS+ NLFSS
Sbjct: 310 LIFGSSFFFSYSNLFSS 323

The following BLAST results are available for this feature:

BLAST of Lsi07G010980 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G010980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5RDD8	1.4e-17	77.92	Zeamatin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3BJX4	1.4e-17	77.92	thaumatin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103490690 PE=3 SV=1	[more]
A0A6J1GBA8	1.6e-13	68.83	thaumatin-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111452577 PE=3 SV=1	[more]
A0A6J1KWD3	2.7e-13	68.83	thaumatin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111498786 PE=3 SV=1	[more]
A0A0A0L119	1.5e-11	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002750 PE=3 SV=1	[more]

BLAST of Lsi07G010980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876615.1	1.1e-18	77.63	thaumatin-like protein 1 isoform X1 [Benincasa hispida]	[more]
XP_008448548.1	2.8e-17	77.92	PREDICTED: thaumatin-like protein 1 [Cucumis melo] >ADN33946.1 zeamatin precurso...	[more]
XP_023539979.1	1.4e-13	70.13	thaumatin-like protein 1 [Cucurbita pepo subsp. pepo]	[more]
KAG7028202.1	1.4e-13	66.27	hypothetical protein SDJN02_09382 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022949172.1	3.2e-13	68.83	thaumatin-like protein 1 [Cucurbita moschata]	[more]

BLAST of Lsi07G010980 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G010980.1	Lsi07G010980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
cellular_component	GO:0016021	integral component of membrane