Lsi07G009030 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G009030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr07: 10364263 .. 10364606 (-)
RNA-Seq Expression	Lsi07G009030
Synteny	Lsi07G009030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGTTTTTACATGCCTGATCCACCAAAGTTGGAGGAGAAGATGTTGATGAACCTACCTCAATGAGTAAAGCACCCATAAGTACACAATCTATCGCACATATATCAAATAGGTCTAGTAAGAAAAGAGCTATAAGTGTGGACCCATTGGTAGTCACAGTGAATGGTCTTAAGAATGTTATGAGCCATCATCTTTCAAGCGCTAATAACAATATTCAAGAAATTGCTTTGTTTTATTAGCAGGTAGCTAAACGAGAGTCTACAATAGAAGAATGTCGAAACTCAATAGTTAGTGAAATTAGAAAGGTAGATGGATTAAGTGTTCAACAAAGAGTGAGAGCG

mRNA sequence

ATGGATATTGGAGGAGAAGATGTTGATGAACCTACCTCAATGAGTAAAGCACCCATAAGTACACAATCTATCGCACATATATCAAATAGGTCTAGTAAGAAAAGAGCTATAAGTGTGGACCCATTGGTAGTCACAGTGAATGGTCTTAAGAATGTAGCTAAACGAGAGTCTACAATAGAAGAATGTCGAAACTCAATAGTTAGTGAAATTAGAAAGGTAGATGGATTAAGTGTTCAACAAAGAGTGAGAGCG

Coding sequence (CDS)

ATGGATATTGGAGGAGAAGATGTTGATGAACCTACCTCAATGAGTAAAGCACCCATAAGTACACAATCTATCGCACATATATCAAATAGGTCTAGTAAGAAAAGAGCTATAAGTGTGGACCCATTGGTAGTCACAGTGAATGGTCTTAAGAATGTAGCTAAACGAGAGTCTACAATAGAAGAATGTCGAAACTCAATAGTTAGTGAAATTAGAAAGGTAGATGGATTAAGTGTTCAACAAAGAGTGAGAGCG

Protein sequence

MDIGGEDVDEPTSMSKAPISTQSIAHISNRSSKKRAISVDPLVVTVNGLKNVAKRESTIEECRNSIVSEIRKVDGLSVQQRVRA

Homology

[Close]

BLAST of Lsi07G009030 vs. ExPASy TrEMBL
Match: A0A5A7TE82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002380 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.1e-07
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 3  IGGEDVDEPTSMSKAPISTQSIAHISNRSSKKRAISVDPLVVTVNGLKNVAKR 56
          +G E+VD   SMS+   +TQSIAH SNRSSKKRA SVDPLV  VNGL+NV  +
Sbjct: 21 VGEEEVDGFASMSETTTNTQSIAHTSNRSSKKRARSVDPLVAAVNGLENVMSK 73

[Close]

BLAST of Lsi07G009030 vs. NCBI nr
Match: KAA0041258.1 (hypothetical protein E6C27_scaffold128G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 3  IGGEDVDEPTSMSKAPISTQSIAHISNRSSKKRAISVDPLVVTVNGLKNVAKR 56
          +G E+VD   SMS+   +TQSIAH SNRSSKKRA SVDPLV  VNGL+NV  +
Sbjct: 21 VGEEEVDGFASMSETTTNTQSIAHTSNRSSKKRARSVDPLVAAVNGLENVMSK 73

The following BLAST results are available for this feature:

BLAST of Lsi07G009030 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G009030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE82	6.1e-07	64.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lsi07G009030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041258.1	1.3e-06	64.15	hypothetical protein E6C27_scaffold128G002380 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi07G009030 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G009030.1	Lsi07G009030.1	mRNA