Lsi07G008620 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G008620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	glycine-rich protein 5-like
Location	chr07: 9782566 .. 9782913 (+)
RNA-Seq Expression	Lsi07G008620
Synteny	Lsi07G008620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACTTATGGCATTGTTCTCATAATTTGTGGCTCAGTGTTAGCAGCTATAGTGATTTTATGTTGTGTTTGTAAGTTTGGAAGTCGTAAGAAGAAGAAAACTACAATTACGAAGCCCACATATTTACCCAATGTTGCTCCACAGAGGAACCCTCCTGATCTTGAACGTGGCCAGCCTACTAAGAATAATGGTGGGAGGACTATTCTTGCTGGAGCAGCTGCTGGCTTAGCTACTGCCGTTGTGGTTACCAATTTAAGCAATGGTGGCAGTGGCGGCGGGGCCGGTTGCGGCGGTGGCGGCTGTGGTGGTGGTGGCTGTGGCGGTGGTTGTGGAGGTGGTGGTTGA

mRNA sequence

ATGAAAACTTATGGCATTGTTCTCATAATTTGTGGCTCAGTGTTAGCAGCTATAGTGATTTTATGTTGTGTTTGTAAGTTTGGAAGTCGTAAGAAGAAGAAAACTACAATTACGAAGCCCACATATTTACCCAATGTTGCTCCACAGAGGAACCCTCCTGATCTTGAACGTGGCCAGCCTACTAAGAATAATGGTGGGAGGACTATTCTTGCTGGAGCAGCTGCTGGCTTAGCTACTGCCGTTGTGGTTACCAATTTAAGCAATGGTGGCAGTGGCGGCGGGGCCGGTTGCGGCGGTGGCGGCTGTGGTGGTGGTGGCTGTGGCGGTGGTTGTGGAGGTGGTGGTTGA

Coding sequence (CDS)

ATGAAAACTTATGGCATTGTTCTCATAATTTGTGGCTCAGTGTTAGCAGCTATAGTGATTTTATGTTGTGTTTGTAAGTTTGGAAGTCGTAAGAAGAAGAAAACTACAATTACGAAGCCCACATATTTACCCAATGTTGCTCCACAGAGGAACCCTCCTGATCTTGAACGTGGCCAGCCTACTAAGAATAATGGTGGGAGGACTATTCTTGCTGGAGCAGCTGCTGGCTTAGCTACTGCCGTTGTGGTTACCAATTTAAGCAATGGTGGCAGTGGCGGCGGGGCCGGTTGCGGCGGTGGCGGCTGTGGTGGTGGTGGCTGTGGCGGTGGTTGTGGAGGTGGTGGTTGA

Protein sequence

MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKTTITKPTYLPNVAPQRNPPDLERGQPTKNNGGRTILAGAAAGLATAVVVTNLSNGGSGGGAGCGGGGCGGGGCGGGCGGGG

Homology

[Close]

BLAST of Lsi07G008620 vs. ExPASy TrEMBL
Match: A0A0A0KVE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 80/128 (62.50%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKTTITKPTY-LPNVAPQRNPPDLERGQ 60
           MKTY IVLI  GSV+ A++IL CVCKFG  +KKKT     TY +P   PQRN  D+ERGQ
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTI----TYNMPKRTPQRN-LDIERGQ 60

Query: 61  PTK--NNGGRTILAGAAAGLATAVVVTNLSNGGSGGGA---------GCGGGGCGG--GG 115
             K  NNGG TIL GAAAGLATA VVT LS+ G GGG          G GGGGCGG  GG
Sbjct: 61  LPKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGG 120

[Close]

BLAST of Lsi07G008620 vs. ExPASy TrEMBL
Match: A0A6J1J409 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.4e-15
Identity = 75/122 (61.48%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKT---TITKPTYLPNVAPQRNPPDLER 60
           M+TY IVLI  G V+A+ VIL CVC +G RKKKKT   T T     P   P R   DLE 
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GQPTKNNGGRTILAGAAAGLATAVVVTNLSNGGSGGGAG-----CGGGGCGGGGCGGGCG 115
           G+    NGG TILAGAAAGLATA VVT+LSN G GGG G      GGGG GGGGCGGGCG
Sbjct: 61  GE--AKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCG 117

[Close]

BLAST of Lsi07G008620 vs. ExPASy TrEMBL
Match: A0A6J1EY84 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 73/123 (59.35%), Postives = 80/123 (65.04%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKT---TITKPTYLPNVAPQRNPPDLER 60
           M+TY IVLI CG V+A+ VIL CVC +G RKKKK    T T     P   P R   DLE 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GQPTKNNGGRTILAGAAAGLATAVVVTNLSNGGSGG------GAGCGGGGCGGGGCGGGC 115
           G+    NGG TILAGAAAGLATA VVT+L+N G GG      G G G GG GGGGCGGGC
Sbjct: 61  GE--AKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGC 118

[Close]

BLAST of Lsi07G008620 vs. ExPASy TrEMBL
Match: A5C0F7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_040909 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKTTITKPTYLPNVAPQRNPPDLERGQP 60
           MK Y IVLI CGSV  AIV+LCC+CK G  K+K   + + T  P  A Q+   D+E+GQ 
Sbjct: 1   MKAYAIVLIACGSVAVAIVVLCCLCK-GGGKRKLPAVQRSTAAPQSA-QQTYSDMEKGQT 60

Query: 61  TKNNGGR----TILAGAAAGLATAVVVTNLSNGGSGGGAGCGGGGCGGGGCGGG 111
           +K++G +     ILAGA A +AT  +VT  S G + GG   GGGGCGGGGCGGG
Sbjct: 61  SKSSGSKDGKMVILAGAGAAIATTSIVTASSGGWNSGGGCGGGGGCGGGGCGGG 112

[Close]

BLAST of Lsi07G008620 vs. ExPASy TrEMBL
Match: A0A438G759 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_065040 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 66/122 (54.10%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKTTITKPTYLPNVAPQRNPPDLERGQP 60
           MK Y +VLI CGSV  AIV+LCC+CK G  K+K+  + + T  P  A Q+   D+E+GQ 
Sbjct: 1   MKAYAVVLIACGSVAVAIVVLCCLCK-GDGKRKRPDVQRSTAAPRSA-QKTYSDMEKGQT 60

Query: 61  TKNNGGR----TILAGAAAGLATAVVVTNLSNGG-SGGGAGC--GGGGCGGGGCGGGCGG 116
           +K++G +     ILAGA A +A   VVT  S GG  GGG GC  GGGGCGGGG GGGCGG
Sbjct: 61  SKSSGSKDGKMVILAGAGAVIAATAVVTASSGGGCGGGGGGCGGGGGGCGGGG-GGGCGG 119

[Close]

BLAST of Lsi07G008620 vs. NCBI nr
Match: XP_038889436.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-26
Identity = 90/125 (72.00%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKTTITKPTYLPNVAPQRNPPDLERGQP 60
           MKTYGIVLI CGSV+A I+IL CVCKFG RK  KT     TY+PN A QRN PDLERGQP
Sbjct: 1   MKTYGIVLITCGSVIAGIMILRCVCKFGGRKIMKTV----TYIPNAASQRN-PDLERGQP 60

Query: 61  TKNNGGRTILAGAAAGLATAVVVTNLSN----------GGSGG--GAGCGGGGCGGGGCG 114
            KNNGG TILAGAAAGLATA VVTNL N          GG GG  G GCGGGGCGGGGCG
Sbjct: 61  NKNNGGITILAGAAAGLATAAVVTNLGNDDTGGGGGCGGGEGGDSGGGCGGGGCGGGGCG 120

[Close]

BLAST of Lsi07G008620 vs. NCBI nr
Match: KGN53550.1 (hypothetical protein Csa_015259 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 9.2e-16
Identity = 80/128 (62.50%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKTTITKPTY-LPNVAPQRNPPDLERGQ 60
           MKTY IVLI  GSV+ A++IL CVCKFG  +KKKT     TY +P   PQRN  D+ERGQ
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTI----TYNMPKRTPQRN-LDIERGQ 60

Query: 61  PTK--NNGGRTILAGAAAGLATAVVVTNLSNGGSGGGA---------GCGGGGCGG--GG 115
             K  NNGG TIL GAAAGLATA VVT LS+ G GGG          G GGGGCGG  GG
Sbjct: 61  LPKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGG 120

[Close]

BLAST of Lsi07G008620 vs. NCBI nr
Match: XP_021995842.2 (chorion class high-cysteine HCB protein 13-like [Helianthus annuus])

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-15
Identity = 69/132 (52.27%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKTTITKPTYLPNV---APQRNPPDLER 60
           MK Y IVLI+CGS+ AA+++LCCV  F + KKKKT +   T  P +    P R  PDLE 
Sbjct: 83  MKAYAIVLIVCGSIAAAVIVLCCV--FNNGKKKKTQVPNTTKQPTIRQHPPLRTDPDLEI 142

Query: 61  G----QPTKNNGGRTILAGAAAGLATAVVVTNLSNGGSG------------GGAGCGGGG 114
           G    + T+ +GG  ILAGAAA +ATA V+ + S GG G            GG GCGGGG
Sbjct: 143 GKKTTKTTEKDGGMVILAGAAASVATAAVIVSASGGGGGGCGGGGGDSGGCGGGGCGGGG 202

[Close]

BLAST of Lsi07G008620 vs. NCBI nr
Match: XP_023552868.1 (glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-15
Identity = 75/122 (61.48%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKT---TITKPTYLPNVAPQRNPPDLER 60
           M+TY IVLI CG V+A+ VIL CVC +G RKKKK    T T     P   P R   DLE 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GQPTKNNGGRTILAGAAAGLATAVVVTNLSNGGSGG-----GAGCGGGGCGGGGCGGGCG 115
           G+    NGG TILAGAAAGLATA VVT+LSN G GG     G G GGGG GGGGCGGGCG
Sbjct: 61  GE--AKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCG 117

[Close]

BLAST of Lsi07G008620 vs. NCBI nr
Match: XP_022985127.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14
Identity = 75/122 (61.48%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 1   MKTYGIVLIICGSVLAAIVILCCVCKFGSRKKKKT---TITKPTYLPNVAPQRNPPDLER 60
           M+TY IVLI  G V+A+ VIL CVC +G RKKKKT   T T     P   P R   DLE 
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GQPTKNNGGRTILAGAAAGLATAVVVTNLSNGGSGGGAG-----CGGGGCGGGGCGGGCG 115
           G+    NGG TILAGAAAGLATA VVT+LSN G GGG G      GGGG GGGGCGGGCG
Sbjct: 61  GE--AKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCG 117

The following BLAST results are available for this feature:

BLAST of Lsi07G008620 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G008620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVE1	4.4e-16	62.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1	[more]
A0A6J1J409	6.4e-15	61.48	glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=...	[more]
A0A6J1EY84	2.4e-14	59.35	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 S...	[more]
A5C0F7	1.3e-10	51.75	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_040909 PE=4 SV=1	[more]
A0A438G759	2.8e-10	54.10	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_065040 PE=4 SV=1	[more]

BLAST of Lsi07G008620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889436.1	1.2e-26	72.00	acanthoscurrin-1-like [Benincasa hispida]	[more]
KGN53550.1	9.2e-16	62.50	hypothetical protein Csa_015259 [Cucumis sativus]	[more]
XP_021995842.2	3.5e-15	52.27	chorion class high-cysteine HCB protein 13-like [Helianthus annuus]	[more]
XP_023552868.1	3.5e-15	61.48	glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985127.1	1.3e-14	61.48	glycine-rich protein 5-like [Cucurbita maxima]	[more]

BLAST of Lsi07G008620 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G008620.1	Lsi07G008620.1	mRNA