Lsi07G005670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G005670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RNase III domain-containing protein
Location	chr07: 6021301 .. 6024967 (+)
RNA-Seq Expression	Lsi07G005670
Synteny	Lsi07G005670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATGTAACACATTGAAGACGTTTGGAAGCTAATCGATATTGTTTTGGTAAGAGTGGTAGTGGAAGATAAGGCACAATGGAACCGAACTTAGAAGATTTTAGTGAAAAGATTCTCATTGCTATTGTTATTGTTTCAAATTTGAGATATTTTCATTGAATGTGAAATTTGTTACTTTTAGGCTGCAAATTAGTGGAGCCAGATGGTCTCTATTTGGGATATGAGCAGTGGTTGCCAGATCCACCAAAGGTGCAGAAGCCCCGATCTGTGTTCAATGCAGCTTCATTAGCATATATTGGCGATTGCATCTATGAGGTGCATTTATGACTCTTTAACTTCTCGGTTTTGATATTTTCTGGAATGTTATGTTTGTTTCTGATGTCCTGAGTTTGGAAGTGTTATATAGAAATTGATAGCAATTTTCATGCCTAGGAATGATGTAGCATATGATACTGTGCAGTTTGGTTTTCCTCCATGGCTTACGCTGACCGTTTCTGAAATATGCAGCTATATGCTCGCAGGCACTTTCTGTTCCCTCCATTGAGTATTGAAGAATTCAATGACCGTGTTATGGCTGTTGTACGATGTGAAGCACAAGTATGTCAAGTCCTGCTCAATTAAATGCTTGAATGGAATAAATCATTCCCTAACAATGTACAATGTCTGTCTTTATAAATATTGTTCTATATCATCTATCCTAATAAACGGTCAGATTCGTGTATGTGGTTGTCCATTGTCATGCAAAATAACACTGAAAGTAGTGGTATTTCACTTTCGCCTTGTGGCTCCCACTTAGTATGTGGTTTTCATGTAAGTTGTAAGGTTAGTTGTCCATGACTTCCTCAACTTCTCATGAGTCTTCACAACCCTCCATCCAAGAAATTTGGAAACTGGCAATGTTCTGTTCTGACTTCTCCTTATTTTTAATCAATGAACCCATGTTTGCATTTTATGCATCTCAACTGTACAACCACATTGTATATCCTCTTATTAATACAAGGTAGAAGACCTCTATACTCAGATCGATTTTGTTATATTTCAGGATGTTCTACTCCAGAAACTTCTAAATGATAATATCTTAACAGAGGCAGAGAGGTCAGTTAAGTCTTTAAGCATTTCATACCTTGTCTTTCATTCTCAATTTCAATGCATAAACTCTGTCAGTAAGAAGTGGATAATTTAACTGCCCTTTTAATCCTCATTCACGTGTATGTTGCACCCATGAACTTTTCTCCCCTGAATCCTGATTTGTTGGATCTGATAAACCTTAATGTAGGGACATCCTTCGATGGGGGAAAAATGTTGGTTCCTCCTCTAAAACACGTACAAAAAAACGTGCTGGTGCTGCAGTTTATAATAGAGCATCTTCGCTAGAAACCTTAGTCAGTTTCCTTTAATTCCTGCTCATTTGAACTAATATTGCCAATTGCCATTTCATCAAACAAAATGTTTGAAACTTATTGTTTATATTTTTTGTAGATTGGTTACCTTTACCTGAACAATGTGAAACGGTTGGATGAAATCATGCAAAAGCTCGGCTTCTCAACTGATTCGTCCTTGCAATTAATTTCAGAGGAATCAAATAGTAAGTTTATTTATAACAATTGCAATCCTCTTCCATCATATTTTACCGGTTAAGCTTCAAGTAGGTGGATAGGCACCACATCAGCCTGTCAACTTTTGATTACCTCCGGCTGAATTCATCCTAATAAATAAATAATTAAAATATTAAACTAAAGATTGTTTGCTGTTATGTTCATATTCCATTGGCAGCCATAGGCATAAGTTGTTGATGATCATATTATGTATTCTACTTGGAGTTCGGTAAGAAAATACGAGAATCAAACGTGGAAACAGACACTTCACTTCTAGATCACCTTGTGAAAGGATCGAAAACCTCATTTCTGATCTTTGTATGTTTGAGAGGTGGCTAGATATATGGCCACTTTATGGGGATTGGTTACTAGACCATTTGTAACTATGAGCTTAGTCTTGTTCTTTTAAATTGGAGTTTGTTTTTTTTTTAGCATCAGAGCCCTTTTGTTTTTGTTCATTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTTGTATTTTCTTTCATTTTTCTCAATCAACGCGTGGTTTCTTACCAAAAATGATCTCTTGCTATCTGAGATCATTTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTTTTGTAACTCCTTTGGTTTGAGCTTATTGCTCTTCTTTTGTAAATTTCATACATCAATGAAATTTGTTAACAAACTTTACAACGGTAGTGACGCTGCAAAGTTGAAACAAAGTGAGTTTTGTTTTGTTTTGTTTGTTTTTTTTTTTTTTTTTTTTTTGTTCTTGTATTTTCTTTCATTTTTCTCAATCAACGCGTGGTTTCTTACCAAAAATGATCTCTTGCTATCTGAGATCATTTGGTCCCAACGGTTTTCATTCTCATATCAATCCATTTTGATCCTTTCCAATATGAACTCCCATAATTTTTTCCACTAGGCGACCAATCAAGCAAGTTAGGTGATGAAGACAAGACATGATCATCGTTGAGCTAAACCATGGTACTGCACTAATACTTCAAAACGGATCAATCCATGGATGTATTTACAATTGATCAGCAATTGAATTTTGTGGCTACTGGCTCTGCATGTTCACTGTACATCTTACGCCCTTCTTTATGCAAATAGGCATGTTTAGTTGACATTTTTGGTTTTTAGGTAATCTCTTCCTTGTACTTTGTGGTAGTTCTGTAAATTATTCTATAAAACTCAGTTGTCACTTCCCACTTACCATGTATTCTGATGATGTCTCCCGTTGCTATCTGTAGCAACATTGCATTGTAACAGAGATACCACACCTTATAGGAGATGTTTAGCTTATGATTTGGAATTGAATATAGTCTGTGTTTGGATTGTATAGAAGATTAGGTTAAAGAGACGTCAGCTCGGTTTCTGTGGCTCGTTTTTTGTCTGGGTTTATGATTTGTAAAATTTAGTATGTAGTATAAGGTGCGAGTTTCATAAGACCGGGCTTATGTAACTCGTGCAATTAACGAATTTGTAGCTTGGAATAAGAAACTGACATACTAAACT

mRNA sequence

ATGTTATGCTGCAAATTAGTGGAGCCAGATGGTCTCTATTTGGGATATGAGCAGTGGTTGCCAGATCCACCAAAGGTGCAGAAGCCCCGATCTGTGTTCAATGCAGCTTCATTAGCATATATTGGCGATTGCATCTATGAGCTATATGCTCGCAGGCACTTTCTGTTCCCTCCATTGAGTATTGAAGAATTCAATGACCGTGTTATGGCTGTTGTACGATGTGAAGCACAAGATGTTCTACTCCAGAAACTTCTAAATGATAATATCTTAACAGAGGCAGAGAGGTCAGTTAAGGACATCCTTCGATGGGGGAAAAATGTTGGTTCCTCCTCTAAAACACGTACAAAAAAACGTGCTGGTGCTGCAGTTTATAATAGAGCATCTTCGCTAGAAACCTTAATTGGTTACCTTTACCTGAACAATGTGAAACGGTTGGATGAAATCATGCAAAAGCTCGGCTTCTCAACTGATTCGTCCTTGCAATTAATTTCAGAGGAATCAAATAGCGACCAATCAAGCAAGTTAGGTGATGAAGACAAGACATGATCATCGTTGAGCTAAACCATGGTACTGCACTAATACTTCAAAACGGATCAATCCATGGATGTATTTACAATTGATCAGCAATTGAATTTTGTGGCTACTGGCTCTGCATGTTCACTGTACATCTTACGCCCTTCTTTATGCAAATAGGCATGTTTAGTTGACATTTTTGGTTTTTAGGTAATCTCTTCCTTGTACTTTGTGGTAGTTCTGTAAATTATTCTATAAAACTCAGTTGTCACTTCCCACTTACCATGTATTCTGATGATGTCTCCCGTTGCTATCTGTAGCAACATTGCATTGTAACAGAGATACCACACCTTATAGGAGATGTTTAGCTTATGATTTGGAATTGAATATAGTCTGTGTTTGGATTGTATAGAAGATTAGGTTAAAGAGACGTCAGCTCGGTTTCTGTGGCTCGTTTTTTGTCTGGGTTTATGATTTGTAAAATTTAGTATGTAGTATAAGGTGCGAGTTTCATAAGACCGGGCTTATGTAACTCGTGCAATTAACGAATTTGTAGCTTGGAATAAGAAACTGACATACTAAACT

Coding sequence (CDS)

ATGTTATGCTGCAAATTAGTGGAGCCAGATGGTCTCTATTTGGGATATGAGCAGTGGTTGCCAGATCCACCAAAGGTGCAGAAGCCCCGATCTGTGTTCAATGCAGCTTCATTAGCATATATTGGCGATTGCATCTATGAGCTATATGCTCGCAGGCACTTTCTGTTCCCTCCATTGAGTATTGAAGAATTCAATGACCGTGTTATGGCTGTTGTACGATGTGAAGCACAAGATGTTCTACTCCAGAAACTTCTAAATGATAATATCTTAACAGAGGCAGAGAGGTCAGTTAAGGACATCCTTCGATGGGGGAAAAATGTTGGTTCCTCCTCTAAAACACGTACAAAAAAACGTGCTGGTGCTGCAGTTTATAATAGAGCATCTTCGCTAGAAACCTTAATTGGTTACCTTTACCTGAACAATGTGAAACGGTTGGATGAAATCATGCAAAAGCTCGGCTTCTCAACTGATTCGTCCTTGCAATTAATTTCAGAGGAATCAAATAGCGACCAATCAAGCAAGTTAGGTGATGAAGACAAGACATGA

Protein sequence

MLCCKLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT

Homology

[Close]

BLAST of Lsi07G005670 vs. ExPASy Swiss-Prot
Match: P74327 (Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=mrnC PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.5e-18
Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 22  DPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDVLL 81
           D P VQ      +  +LAY+GD ++ELY R  +LFPP  I +F+ RV+A VR E Q  +L
Sbjct: 18  DAPAVQS----LSPVALAYLGDAVFELYVRCCYLFPPRRIGDFHRRVVAQVRAEQQAQIL 77

Query: 82  QKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNN 141
             LL    LT+ E   K+ +R G+N  +S    T +RA   +Y  AS LETL+GYLYL +
Sbjct: 78  TTLLPQ--LTDPE---KEWVRRGRNAATS----TSRRANPELYQAASGLETLLGYLYLRD 132

Query: 142 VKRLDEIM 150
            +RLDE++
Sbjct: 138 ARRLDELL 132

[Close]

BLAST of Lsi07G005670 vs. ExPASy Swiss-Prot
Match: Q8DLQ0 (Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=mrnC PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.3e-15
Identity = 56/140 (40.00%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 14  LGYEQWLP-DPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVV 73
           L + + LP  PP +  P      A+LAY GD +YEL+ R  FL PP  I  ++ +V+A V
Sbjct: 2   LDFGELLPLQPPTI--PAHQLPPAALAYFGDAVYELFIRLLFLTPPQRINAYHRQVVAHV 61

Query: 74  RCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLET 133
           R E+Q   +  L      TE ERS   I R G+N  +       KR  A +Y +A+  E 
Sbjct: 62  RAESQARYMDFLW--EYCTETERS---IFRQGRNAAADG----PKRVAAKIYRQATGFEA 121

Query: 134 LIGYLYLNNVKRLDEIMQKL 153
           L+GYLYL N +RL EI Q L
Sbjct: 122 LLGYLYLTNPQRLQEIFQLL 130

[Close]

BLAST of Lsi07G005670 vs. ExPASy Swiss-Prot
Match: Q05370 (Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) OX=32048 GN=mrnC PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 40/117 (34.19%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 36  ASLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDVLLQKLLNDNILTEAER 95
           ++LAY GD +YEL+ R  FL PP  I  ++ +V+A VR E+Q   +     D +      
Sbjct: 25  SALAYFGDAVYELFIRFIFLTPPQRINAYHHQVVAHVRAESQARYM-----DILWPHCTA 84

Query: 96  SVKDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKL 153
           +   I R G+N  +       KR  A +Y +A+  E L+GYLYL + +RL +++  L
Sbjct: 85  AELTIFRQGRNAAADG----PKRVPAKIYRQATGFEALLGYLYLTDPQRLQDVLALL 132

[Close]

BLAST of Lsi07G005670 vs. ExPASy Swiss-Prot
Match: Q5N0K8 (Mini-ribonuclease 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=mrnC PE=3 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-10
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 0


Query: 37  SLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDVLLQKLLNDNILTEAERS 96
           +LAY+GD +YE + R   L P     + +  V+  VR E Q  LL  LL   +LT  E  
Sbjct: 27  ALAYLGDALYEFHVRLRLLLPAQRSHQVHQSVVGAVRAERQAELLVSLL--PLLTAEE-- 86

Query: 97  VKDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKL 153
             +I+R G+N       R  +R     Y +A+ LETL+GYLYL + +RL  ++Q+L
Sbjct: 87  -LEIVRRGRNAAG----RVPRRLTGEYYQQATGLETLLGYLYLCDPQRLQALLQQL 133

[Close]

BLAST of Lsi07G005670 vs. ExPASy Swiss-Prot
Match: Q7NDQ2 (Mini-ribonuclease 3 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=mrnC PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-08
Identity = 39/113 (34.51%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 37  SLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDVLLQKLLNDNILTEAERS 96
           +LAY+GD ++EL+ R   L PP  ++  +   +A VR  AQ  L   L     + EA   
Sbjct: 13  ALAYLGDAVWELHVRTRVLLPPRRLQWLHGDTVACVRASAQAKLATCLSPHLTVEEA--- 72

Query: 97  VKDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIM 150
             D LR G+N G +      +R   A Y  A++ E L+GYL+L +  RL  I+
Sbjct: 73  --DWLRRGRNAGGT----VPRRLDPATYRLATAFEALLGYLFLADRDRLGVIL 116

[Close]

BLAST of Lsi07G005670 vs. ExPASy TrEMBL
Match: A0A1S3BIG3 (uncharacterized protein LOC103490018 OS=Cucumis melo OX=3656 GN=LOC103490018 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.6e-84
Identity = 164/178 (92.13%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 4   CKLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE 63
           CKL EPDGLYLGY+QWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE
Sbjct: 78  CKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE 137

Query: 64  FNDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAV 123
           +NDRVMAVVRCEAQDVLLQKLLNDN LT AER   DILRWGKNVGSSSKTRTKKRAGAAV
Sbjct: 138 YNDRVMAVVRCEAQDVLLQKLLNDNFLTGAER---DILRWGKNVGSSSKTRTKKRAGAAV 197

Query: 124 YNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT 182
           YNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQ   LGDE+ +
Sbjct: 198 YNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQPRTLGDEENS 252

[Close]

BLAST of Lsi07G005670 vs. ExPASy TrEMBL
Match: A0A6J1J002 (uncharacterized protein LOC111479993 OS=Cucurbita maxima OX=3661 GN=LOC111479993 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.5e-82
Identity = 161/177 (90.96%), Postives = 168/177 (94.92%), Query Frame = 0


Query: 5   KLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEF 64
           K VEPDGLYLGYEQWLP+PPKVQKPRSVFNAASLAY+GDCIYELYARRHFLFP L+IEE+
Sbjct: 79  KSVEPDGLYLGYEQWLPNPPKVQKPRSVFNAASLAYMGDCIYELYARRHFLFPTLNIEEY 138

Query: 65  NDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVY 124
           NDRVMAVVRCEAQDVLLQKLLNDN LTEAER   DILRWGKNVGSSSKTRTKKRAGAAVY
Sbjct: 139 NDRVMAVVRCEAQDVLLQKLLNDNFLTEAER---DILRWGKNVGSSSKTRTKKRAGAAVY 198

Query: 125 NRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT 182
           NRASSLETLIGYLYLNNVKRLDEIM+KLGFSTDSSLQLI EESNS+Q SK GDED+T
Sbjct: 199 NRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNSEQPSKSGDEDET 252

[Close]

BLAST of Lsi07G005670 vs. ExPASy TrEMBL
Match: A0A6J1GYR2 (uncharacterized protein LOC111458065 OS=Cucurbita moschata OX=3662 GN=LOC111458065 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.5e-82
Identity = 161/177 (90.96%), Postives = 168/177 (94.92%), Query Frame = 0


Query: 5   KLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEF 64
           K VEPDGLYLGYEQWLP+PPKVQKPRSVFNAASLAY+GDCIYELYARRHFLFP L+IEE+
Sbjct: 79  KSVEPDGLYLGYEQWLPNPPKVQKPRSVFNAASLAYMGDCIYELYARRHFLFPTLNIEEY 138

Query: 65  NDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVY 124
           NDRVMAVVRCEAQDVLLQKLLNDN LTEAER   DILRWGKNVGSSSKTRTKKRAGAAVY
Sbjct: 139 NDRVMAVVRCEAQDVLLQKLLNDNFLTEAER---DILRWGKNVGSSSKTRTKKRAGAAVY 198

Query: 125 NRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT 182
           NRASSLETLIGYLYLNNV+RLDEIM+KLGFSTDSSLQLI EESNSDQ SK GDED+T
Sbjct: 199 NRASSLETLIGYLYLNNVERLDEIMKKLGFSTDSSLQLIPEESNSDQPSKSGDEDET 252

[Close]

BLAST of Lsi07G005670 vs. ExPASy TrEMBL
Match: A0A0A0LDF2 (RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G848810 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.6e-81
Identity = 156/164 (95.12%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 4   CKLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE 63
           CKL EPDGLYLGY+QWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE
Sbjct: 78  CKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE 137

Query: 64  FNDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAV 123
           +NDRVMAVVRCEAQDVLLQKLLNDN LTEAER   DILRWGKNVGSSSKTRTKKRAGAAV
Sbjct: 138 YNDRVMAVVRCEAQDVLLQKLLNDNFLTEAER---DILRWGKNVGSSSKTRTKKRAGAAV 197

Query: 124 YNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEES 168
           YNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQ+ISEES
Sbjct: 198 YNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEES 238

[Close]

BLAST of Lsi07G005670 vs. ExPASy TrEMBL
Match: A0A6J1D2Y6 (uncharacterized protein LOC111016851 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016851 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 160/177 (90.40%), Postives = 167/177 (94.35%), Query Frame = 0


Query: 5   KLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEF 64
           K VEP+GLYLG EQWLP+PPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPL+IEE+
Sbjct: 78  KPVEPEGLYLGCEQWLPNPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLNIEEY 137

Query: 65  NDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVY 124
           NDRVMAVVRCEAQD+LLQKLLNDN LTEAER   DILRWGKNVG SSKTRTKKRAGAAVY
Sbjct: 138 NDRVMAVVRCEAQDILLQKLLNDNFLTEAER---DILRWGKNVG-SSKTRTKKRAGAAVY 197

Query: 125 NRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT 182
           NRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNS+Q  KLGD DK+
Sbjct: 198 NRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSNQLGKLGDNDKS 250

[Close]

BLAST of Lsi07G005670 vs. NCBI nr
Match: XP_008447605.1 (PREDICTED: uncharacterized protein LOC103490018 [Cucumis melo])

HSP 1 Score: 322.0 bits (824), Expect = 3.3e-84
Identity = 164/178 (92.13%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 4   CKLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE 63
           CKL EPDGLYLGY+QWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE
Sbjct: 78  CKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE 137

Query: 64  FNDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAV 123
           +NDRVMAVVRCEAQDVLLQKLLNDN LT AER   DILRWGKNVGSSSKTRTKKRAGAAV
Sbjct: 138 YNDRVMAVVRCEAQDVLLQKLLNDNFLTGAER---DILRWGKNVGSSSKTRTKKRAGAAV 197

Query: 124 YNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT 182
           YNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQ   LGDE+ +
Sbjct: 198 YNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQPRTLGDEENS 252

[Close]

BLAST of Lsi07G005670 vs. NCBI nr
Match: XP_023526365.1 (uncharacterized protein LOC111789879 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.2 bits (814), Expect = 4.7e-83
Identity = 163/177 (92.09%), Postives = 168/177 (94.92%), Query Frame = 0


Query: 5   KLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEF 64
           K VEPDGLYLGYEQWLP+PPKVQKPRSVFNAASLAY+GDCIYELYARRHFLFP LSIEE+
Sbjct: 79  KSVEPDGLYLGYEQWLPNPPKVQKPRSVFNAASLAYMGDCIYELYARRHFLFPTLSIEEY 138

Query: 65  NDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVY 124
           NDRVMAVVRCEAQDVLLQKLLNDN LTEAER   DILRWGKNVGSSSKTRTKKRAGAAVY
Sbjct: 139 NDRVMAVVRCEAQDVLLQKLLNDNFLTEAER---DILRWGKNVGSSSKTRTKKRAGAAVY 198

Query: 125 NRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT 182
           NRASSLETLIGYLYLNNVKRLDEIM+KLGFSTDSSLQLI EESNSDQ SK GDED+T
Sbjct: 199 NRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNSDQPSKSGDEDET 252

[Close]

BLAST of Lsi07G005670 vs. NCBI nr
Match: KAG6581854.1 (hypothetical protein SDJN03_21856, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.5 bits (807), Expect = 3.1e-82
Identity = 161/177 (90.96%), Postives = 168/177 (94.92%), Query Frame = 0


Query: 5   KLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEF 64
           K VEPDGLYLGYEQWLP+PPKVQKPRSVFNAASLAY+GDCIYELYARRHFLFP L+IEE+
Sbjct: 79  KSVEPDGLYLGYEQWLPNPPKVQKPRSVFNAASLAYMGDCIYELYARRHFLFPTLNIEEY 138

Query: 65  NDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVY 124
           NDRVMAVVRCEAQDVLLQKLLNDN LTEAER   DILRWGKNVGSSSKTRTKKRAGAAVY
Sbjct: 139 NDRVMAVVRCEAQDVLLQKLLNDNFLTEAER---DILRWGKNVGSSSKTRTKKRAGAAVY 198

Query: 125 NRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT 182
           NRASSLETLIGYLYLNNVKRLDEIM+KLGFSTDSSLQLI EESNSDQ SK GD+D+T
Sbjct: 199 NRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNSDQPSKSGDKDET 252

[Close]

BLAST of Lsi07G005670 vs. NCBI nr
Match: XP_022980704.1 (uncharacterized protein LOC111479993 [Cucurbita maxima])

HSP 1 Score: 315.5 bits (807), Expect = 3.1e-82
Identity = 161/177 (90.96%), Postives = 168/177 (94.92%), Query Frame = 0


Query: 5   KLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEF 64
           K VEPDGLYLGYEQWLP+PPKVQKPRSVFNAASLAY+GDCIYELYARRHFLFP L+IEE+
Sbjct: 79  KSVEPDGLYLGYEQWLPNPPKVQKPRSVFNAASLAYMGDCIYELYARRHFLFPTLNIEEY 138

Query: 65  NDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVY 124
           NDRVMAVVRCEAQDVLLQKLLNDN LTEAER   DILRWGKNVGSSSKTRTKKRAGAAVY
Sbjct: 139 NDRVMAVVRCEAQDVLLQKLLNDNFLTEAER---DILRWGKNVGSSSKTRTKKRAGAAVY 198

Query: 125 NRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT 182
           NRASSLETLIGYLYLNNVKRLDEIM+KLGFSTDSSLQLI EESNS+Q SK GDED+T
Sbjct: 199 NRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNSEQPSKSGDEDET 252

[Close]

BLAST of Lsi07G005670 vs. NCBI nr
Match: XP_022956334.1 (uncharacterized protein LOC111458065 [Cucurbita moschata])

HSP 1 Score: 315.5 bits (807), Expect = 3.1e-82
Identity = 161/177 (90.96%), Postives = 168/177 (94.92%), Query Frame = 0


Query: 5   KLVEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEF 64
           K VEPDGLYLGYEQWLP+PPKVQKPRSVFNAASLAY+GDCIYELYARRHFLFP L+IEE+
Sbjct: 79  KSVEPDGLYLGYEQWLPNPPKVQKPRSVFNAASLAYMGDCIYELYARRHFLFPTLNIEEY 138

Query: 65  NDRVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVY 124
           NDRVMAVVRCEAQDVLLQKLLNDN LTEAER   DILRWGKNVGSSSKTRTKKRAGAAVY
Sbjct: 139 NDRVMAVVRCEAQDVLLQKLLNDNFLTEAER---DILRWGKNVGSSSKTRTKKRAGAAVY 198

Query: 125 NRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSSKLGDEDKT 182
           NRASSLETLIGYLYLNNV+RLDEIM+KLGFSTDSSLQLI EESNSDQ SK GDED+T
Sbjct: 199 NRASSLETLIGYLYLNNVERLDEIMKKLGFSTDSSLQLIPEESNSDQPSKSGDEDET 252

[Close]

BLAST of Lsi07G005670 vs. TAIR 10
Match: AT3G13740.1 (Ribonuclease III family protein )

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-60
Identity = 115/166 (69.28%), Postives = 140/166 (84.34%), Query Frame = 0


Query: 7   VEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEFND 66
           V+ D  Y+GYE W P PPK++KPRSVFN ASLA+IGD IYELYARRHFLFPPLSIE++ND
Sbjct: 69  VDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYARRHFLFPPLSIEDYND 128

Query: 67  RVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVYNR 126
           RV AVVRCEAQ  LL KL++D+ LT+ ER   DILRWGKN+G S++TRT++RAG AVYN+
Sbjct: 129 RVRAVVRCEAQYALLNKLVDDDFLTKEER---DILRWGKNLG-SARTRTRRRAGNAVYNK 188

Query: 127 ASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQS 173
           ASSLETLIGYLYL N KRL++IM+KLGFS+DSS +++ EE+N   S
Sbjct: 189 ASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEETNPKPS 230

[Close]

BLAST of Lsi07G005670 vs. TAIR 10
Match: AT1G55140.1 (Ribonuclease III family protein )

HSP 1 Score: 227.6 bits (579), Expect = 7.8e-60
Identity = 117/164 (71.34%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 10  DGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEFNDRVM 69
           D   +GYE+W P PPKV+KPRSVFNAASLAYIGD IYE+YARRHFLFPPLSIEE+NDRV 
Sbjct: 76  DDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEIYARRHFLFPPLSIEEYNDRVR 135

Query: 70  AVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVYNRASS 129
           AVVRCEAQ  LLQKL++D+ LT+ ER   DILRWGKNVG S KTR+ +RAG AVYN+ASS
Sbjct: 136 AVVRCEAQYALLQKLVDDDFLTKDER---DILRWGKNVG-SVKTRSTRRAGVAVYNKASS 195

Query: 130 LETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQSS 174
           LETLIGYLYL+N KRL+E+MQKLGFS+ SS + + +E+ S++ S
Sbjct: 196 LETLIGYLYLSNGKRLEEMMQKLGFSSGSSTERMVKEAGSNKPS 235

[Close]

BLAST of Lsi07G005670 vs. TAIR 10
Match: AT3G13740.2 (Ribonuclease III family protein )

HSP 1 Score: 211.8 bits (538), Expect = 4.4e-55
Identity = 109/166 (65.66%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 7   VEPDGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEFND 66
           V+ D  Y+GYE W P PPK++KPRSVFN ASLA+IGD IYELYARRHFLFPPLSIE++ND
Sbjct: 69  VDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYARRHFLFPPLSIEDYND 128

Query: 67  RVMAVVRCEAQDVLLQKLLNDNILTEAERSVKDILRWGKNVGSSSKTRTKKRAGAAVYNR 126
           RV AV        LL KL++D+ LT+ ER   DILRWGKN+G S++TRT++RAG AVYN+
Sbjct: 129 RVRAVY------ALLNKLVDDDFLTKEER---DILRWGKNLG-SARTRTRRRAGNAVYNK 188

Query: 127 ASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNSDQS 173
           ASSLETLIGYLYL N KRL++IM+KLGFS+DSS +++ EE+N   S
Sbjct: 189 ASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEETNPKPS 224

[Close]

BLAST of Lsi07G005670 vs. TAIR 10
Match: AT1G55140.2 (Ribonuclease III family protein )

HSP 1 Score: 146.0 bits (367), Expect = 3.0e-35
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 10  DGLYLGYEQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEFNDRVM 69
           D   +GYE+W P PPKV+KPRSVFNAASLAYIGD IYE+YARRHFLFPPLSIEE+NDRV 
Sbjct: 76  DDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEIYARRHFLFPPLSIEEYNDRVR 135

Query: 70  AVVRCEAQDVLLQKLLNDNILTEAERSV 98
           AVVRCEAQ  LLQKL++D+ LT+ ERS+
Sbjct: 136 AVVRCEAQYALLQKLVDDDFLTKDERSI 163

The following BLAST results are available for this feature:

BLAST of Lsi07G005670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P74327	5.5e-18	43.75	Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 G...	[more]
Q8DLQ0	3.3e-15	40.00	Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=...	[more]
Q05370	1.1e-10	34.19	Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) OX=32048 GN=mrnC PE=3...	[more]
Q5N0K8	1.9e-10	37.07	Mini-ribonuclease 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 14...	[more]
Q7NDQ2	5.2e-08	34.51	Mini-ribonuclease 3 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=2...	[more]

BLAST of Lsi07G005670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIG3	1.6e-84	92.13	uncharacterized protein LOC103490018 OS=Cucumis melo OX=3656 GN=LOC103490018 PE=...	[more]
A0A6J1J002	1.5e-82	90.96	uncharacterized protein LOC111479993 OS=Cucurbita maxima OX=3661 GN=LOC111479993...	[more]
A0A6J1GYR2	1.5e-82	90.96	uncharacterized protein LOC111458065 OS=Cucurbita moschata OX=3662 GN=LOC1114580...	[more]
A0A0A0LDF2	3.6e-81	95.12	RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G848810 P...	[more]
A0A6J1D2Y6	1.1e-80	90.40	uncharacterized protein LOC111016851 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lsi07G005670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447605.1	3.3e-84	92.13	PREDICTED: uncharacterized protein LOC103490018 [Cucumis melo]	[more]
XP_023526365.1	4.7e-83	92.09	uncharacterized protein LOC111789879 [Cucurbita pepo subsp. pepo]	[more]
KAG6581854.1	3.1e-82	90.96	hypothetical protein SDJN03_21856, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022980704.1	3.1e-82	90.96	uncharacterized protein LOC111479993 [Cucurbita maxima]	[more]
XP_022956334.1	3.1e-82	90.96	uncharacterized protein LOC111458065 [Cucurbita moschata]	[more]

BLAST of Lsi07G005670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13740.1	1.6e-60	69.28	Ribonuclease III family protein	[more]
AT1G55140.1	7.8e-60	71.34	Ribonuclease III family protein	[more]
AT3G13740.2	4.4e-55	65.66	Ribonuclease III family protein	[more]
AT1G55140.2	3.0e-35	76.14	Ribonuclease III family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000999	Ribonuclease III domain	PFAM	PF00636	Ribonuclease_3	coord: 37..140 e-value: 9.3E-9 score: 35.9
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 24..152 e-value: 4.37917E-10 score: 53.0003
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	1.10.1520.10	Ribonuclease III domain	coord: 25..158 e-value: 5.7E-40 score: 137.8
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 31..152
None	No IPR available	PANTHER	PTHR34276:SF2	BNAC05G39580D PROTEIN	coord: 8..170
None	No IPR available	PANTHER	PTHR34276	MINI-RIBONUCLEASE 3	coord: 8..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G005670.1	Lsi07G005670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006396	RNA processing
molecular_function	GO:0004525	ribonuclease III activity