Lsi07G004780 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G004780
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ran BP2/NZF zinc finger-like superfamily protein isoform 2
Location	chr07: 5032676 .. 5036407 (-)
RNA-Seq Expression	Lsi07G004780
Synteny	Lsi07G004780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACGACCAATACTCACATTAAAAGAATTGCTTTATAAATTATTAAAGATAATGTTGCTTTCCAAAATTCGAAATCTTAAACCCTAAAAATTTGATAGCTGAAATATTTGAATACAGCTCCGTCCCATCTTTGCTCCATATGTCCCCTAAAAGAAAAGGAGGGGAGAAAAAAAAGAGAAACTTTTAATTTATATTTTTTTTAAAAAAAAAAGACATTTTAATAAATAAAAAAGAAACAATGTCCATGTTATAAGTTGTAATTATACTGTCATGTCCATGTTTAAAATATCGAATTCTTAATTTTACGGAAATTTCAATAGAAATATTGATAAAATATCATTTTTGATGGATATTTCTGGAAATATTATAAAAACAAAAACTTTTAAAAATAAATTTAAATTAGTAAATAAATTTTTTATTATTTTCCAATAAGTAAACATGCCCATTATTTATATTAGTGGCATTTTGATCTTATTTTGTGTGTTTTGTGGATTTTTCTACAATATAATGAAAATATCGATTTATCTCTCATATCGATATCGAACCCATGGAAATATAGAAATATCGATGGAAATATCAACATATTGATAGAAATTTAATACTATGGTACCAGTGGCAGATCCAGAACTTCATGTGATGGGGGCACAAATGTATATATAGTTAGAGGATTAGTTCATGAGCTTCTAAATTTTTGTTTATATATAGTTCCTAAATTTTACAAAAATGTCTAATGGATCCCTAAATTTTATTCGTTTTTTTGTTTGATAGATTCTTAAAATATCAATTTTGCATCTAATAAGTCTCTTACATATTTGAAAACGTTAAAAATTAAATGTTGCATTAGACATTAGATCTAACTTTGTACTTAATATTTACAATTAAACATTTTTCAAAATTAATGTATCAATTAACTACAAAATTTAAAAATTAAGGTTCAAATACACACAAAACTATATATATTTTTTTTTGTCTTATAAAACGATTACTTTAAAAATATTTTTAATATTTTTAAGATCTATTAAATATAAAAGTGAAGCAATTTATATAGATTTATTAGACATTTTTAAGGGACAATAGTCAAAATTGAAAGTTTAGAGATTTATTAGTCAGAATGTTCAAAATTTTTAAGAACTAAACTTGTAATTTAACACATATAAATATAATTTTAAATGCATTGATATATAATATCTATATTAAATAATACTAATTACAAAATTATATTATAAACATCTAGAGAATTATTCACCTACATACCTAAGCAAAAAAATCATCCAAGCAATATTTGTAAAATAACTTTATAAACATCCAAAAATATTTGTGTATATATATATATATGAGAAAAATTAGAATGAAATCAAGTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATGTCATGAAATAGTAATTTCATGTCTAAAAGTATGTTTTTAGCTTTAAATAATGTCTCATATTTATTAGACATAAAATTGAAAGTCTAGAAATTTACTAGACATTGATAACTTTTAAACTAACTTGTGTTTCAAACTTTTTTTTTTCTATTTAGAAATGTGTTTTGTACTTGAAAAAATATTTGTTTTTAAATTATTTTTTTAGGGTGTTGTGTTAATACAGAGAGAAAAAGAAGATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAATGGCAGCGGTGGCGGAAGAGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAAGCCGGTCAAGTTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGTCCCGCCCGTACTACTGCCTCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGGTATTAGTTTATAAAAGCACAACTAGTTTGATAATCATTTGATTTTTTTTTCCATATAATTTTTTTTTTACTATAGTTTTCATTTCCCCTTTAAATTCTTAAGAAAATTGTAAAACAAAATTTTTTTCTCTTTATTTAGTTTTGAAAACTTAGACTTCTTACTTTTAAAAAAACATTCGTAAAAAGTGATAATGAAATAAAGAAACTCATATGAACTTCATTTTTAAATATAAAAATCAAATAGTTATCCAATAAAGTCATTATATTTTATCATATTAAAGTTTGTACAATACTAATTACCTCAATTTGTATAATACTAATTACCACCTCTATATCTCTAGATTCTCACATGAATATAATTGTATAAAAATTTAGGTCCGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTCAGATGCAGTGCTCCAAGAGACTCCTACTAACAAAACTAGCCATGCCAGAATCCTCCTTCATCATCAAGTTTTGGGTATGTACGCTTTCGTAACCATTATATATCTTTTAATACAAGTTGGGTATGGAAATTTGAACCTCTCACCATAAGAAAATGGTTATAAATGTTCAAACTATTAAGGGGCGTTCAAACAAAGAATGATGTTGTTTAGCTGGGACCTAGGAGAGGTTTAAAATTATTTACAATCTTTTAATTAAAAAAGTTATATAAGTTACTTAGGAATTTAAAATAATTTTAAAACAATCATTTAGTGTCATTAACATATCTTTATTTTTTGCCCAATGTTTTGCAGGTATGCTTCCAATTGAGAAAAATTTCAAAGAGACTCCATAACCTGCATTAGCTTTTCTTCTCTTCTCTCTCTTTTTTTGTTTTTGGTTTTGTAACCTTTTTCTTTTATGAGTGATGTTAATTTCTGTGATGATAAAAAATTGAGATATTGTCCAAAAA

mRNA sequence

ATGAAAGAGAAAAAGAAGATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAATGGCAGCGGTGGCGGAAGAGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAAGCCGGTCAAGTTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGTCCCGCCCGTACTACTGCCTCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGACTTCTTACTTTTAAAAAAACATTCGTAAAAAGTCCGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTCAGATGCAGTGCTCCAAGAGACTCCTACTAACAAAACTAGCCATGCCAGAATCCTCCTTCATCATCAAGTTTTGGGTATGCTTCCAATTGAGAAAAATTTCAAAGAGACTCCATAACCTGCATTAGCTTTTCTTCTCTTCTCTCTCTTTTTTTGTTTTTGGTTTTGTAACCTTTTTCTTTTATGAGTGATGTTAATTTCTGTGATGATAAAAAATTGAGATATTGTCCAAAAA

Coding sequence (CDS)

ATGAAAGAGAAAAAGAAGATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAATGGCAGCGGTGGCGGAAGAGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAAGCCGGTCAAGTTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGTCCCGCCCGTACTACTGCCTCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGACTTCTTACTTTTAAAAAAACATTCGTAAAAAGTCCGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTCAGATGCAGTGCTCCAAGAGACTCCTACTAACAAAACTAGCCATGCCAGAATCCTCCTTCATCATCAAGTTTTGGGTATGCTTCCAATTGAGAAAAATTTCAAAGAGACTCCATAA

Protein sequence

MKEKKKMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWICARLLTFKKTFVKSPVAMNITLQAGWSASDAVLQETPTNKTSHARILLHHQVLGMLPIEKNFKETP

Homology

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BLAST of Lsi07G004780 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-06
Identity = 42/134 (31.34%), Postives = 44/134 (32.84%), Query Frame = 0


Query: 5   KKMSRPGDWNCRSCQHLNFQRRDMCQRCGDP------------------KNGSGGGRGGS 64
           K   RPGDWNC  C   NFQRR  C RC  P                    G+  G G S
Sbjct: 339 KNRPRPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSS 398

Query: 65  GF--GYGGS-----------------------------------DVRPGDWYCSVGNCGA 84
            F   YGGS                                     R GDW C    CG 
Sbjct: 399 HFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGY 458

[Close]

BLAST of Lsi07G004780 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 7.4e-05
Identity = 25/47 (53.19%), Postives = 28/47 (59.57%), Query Frame = 0


Query: 9   RPGDWNCRSCQHLNFQRRDMCQRCGDPK---NGSGGGRGGSGFGYGG 53
           R GDW C SC + NF  R+ C RC  PK    GS GG GG G+G GG
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGG 321

[Close]

BLAST of Lsi07G004780 vs. ExPASy Swiss-Prot
Match: P32770 (Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NRP1 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 6.2e-04
Identity = 19/33 (57.58%), Postives = 20/33 (60.61%), Query Frame = 0


Query: 3   EKKKMSRPGDWNCRSCQHLNFQRRDMCQRCGDP 36
           + K   RPGDWNC SC   NFQRR  C RC  P
Sbjct: 349 QSKNKPRPGDWNCPSCGFSNFQRRTACFRCSFP 381

[Close]

BLAST of Lsi07G004780 vs. ExPASy TrEMBL
Match: A0A5A7TRE1 (Putative RNA-binding protein C17H9.04c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001610 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81
Identity = 153/184 (83.15%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF FASPAR  ASAWKSG    
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSG---- 120

Query: 127 ARLLTFKKTFVKSPVAMNITLQAGWSASDAVLQETPTNKTSHARILLHHQVLGMLPIEKN 186
                         VAMNITLQAGWSA DAVL+ETPTNKTS A+ILLHHQVLGML  EKN
Sbjct: 121 -------------RVAMNITLQAGWSALDAVLRETPTNKTSQAKILLHHQVLGMLSTEKN 167

Query: 187 FKET 191
           FKET
Sbjct: 181 FKET 167

[Close]

BLAST of Lsi07G004780 vs. ExPASy TrEMBL
Match: A0A1S3BZE4 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucumis melo OX=3656 GN=LOC103494712 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 9.5e-64
Identity = 115/122 (94.26%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF FASPAR  ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSGDWIC 120

Query: 127 AR 129
           AR
Sbjct: 121 AR 122

[Close]

BLAST of Lsi07G004780 vs. ExPASy TrEMBL
Match: A0A0A0KTI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.4e-62
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF F SPART ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGDWIC 120

Query: 127 AR 129
           AR
Sbjct: 121 AR 122

[Close]

BLAST of Lsi07G004780 vs. ExPASy TrEMBL
Match: A0A6J1GWG9 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662 GN=LOC111457775 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.9e-60
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GG R GSGFG+GGSDVRPGDWYCSVGN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF FA+PAR+ ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWIC 120

Query: 127 AR 129
           AR
Sbjct: 121 AR 122

[Close]

BLAST of Lsi07G004780 vs. ExPASy TrEMBL
Match: A0A6J1IX27 (ranBP2-type zinc finger protein At1g67325-like OS=Cucurbita maxima OX=3661 GN=LOC111479282 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.5e-58
Identity = 106/122 (86.89%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GGGR GSGFG+GGSDVRPGDWYCS+GN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKAG-GGGRAGSGFGFGGSDVRPGDWYCSLGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF F +PAR+ ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFGFPTPARSPASAWKSGDWIC 120

Query: 127 AR 129
           AR
Sbjct: 121 AR 121

[Close]

BLAST of Lsi07G004780 vs. NCBI nr
Match: KAA0044427.1 (putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa] >TYK29555.1 putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 2.1e-81
Identity = 153/184 (83.15%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF FASPAR  ASAWKSG    
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSG---- 120

Query: 127 ARLLTFKKTFVKSPVAMNITLQAGWSASDAVLQETPTNKTSHARILLHHQVLGMLPIEKN 186
                         VAMNITLQAGWSA DAVL+ETPTNKTS A+ILLHHQVLGML  EKN
Sbjct: 121 -------------RVAMNITLQAGWSALDAVLRETPTNKTSQAKILLHHQVLGMLSTEKN 167

Query: 187 FKET 191
           FKET
Sbjct: 181 FKET 167

[Close]

BLAST of Lsi07G004780 vs. NCBI nr
Match: XP_038892097.1 (zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida] >XP_038892106.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida])

HSP 1 Score: 255.4 bits (651), Expect = 4.0e-64
Identity = 116/122 (95.08%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISP+ FASPART ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPYAFASPARTAASAWKSGDWIC 120

Query: 127 AR 129
           AR
Sbjct: 121 AR 122

[Close]

BLAST of Lsi07G004780 vs. NCBI nr
Match: XP_008454250.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-63
Identity = 115/122 (94.26%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF FASPAR  ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSGDWIC 120

Query: 127 AR 129
           AR
Sbjct: 121 AR 122

[Close]

BLAST of Lsi07G004780 vs. NCBI nr
Match: KGN52873.1 (hypothetical protein Csa_014917 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 2.8e-62
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF F SPART ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGDWIC 120

Query: 127 AR 129
           AR
Sbjct: 121 AR 122

[Close]

BLAST of Lsi07G004780 vs. NCBI nr
Match: XP_022955940.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >XP_022955941.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata])

HSP 1 Score: 241.5 bits (615), Expect = 5.9e-60
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 66
           M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GG R GSGFG+GGSDVRPGDWYCSVGN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGN 60

Query: 67  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 126
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF FA+PAR+ ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWIC 120

Query: 127 AR 129
           AR
Sbjct: 121 AR 122

[Close]

BLAST of Lsi07G004780 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 154.8 bits (390), Expect = 6.8e-38
Identity = 82/146 (56.16%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSG----------GGRGGSGFGY-GGSDV 66
           MSRPGDWNCRSC HLNFQRRD CQRCGD ++G G          GGR  S FG+  GSDV
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query: 67  RPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA------------FDFDIPRPSPRGI 126
           RPGDWYC+VGNCG HNFASRS+CFKCG FKD+  A            FD DI R      
Sbjct: 61  RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRS----- 120

Query: 127 SPFTFASPARTTASAWKSGDWICARL 130
                  P     S+WKSGDWIC R+
Sbjct: 121 -----RVPGNGGRSSWKSGDWICTRI 136

[Close]

BLAST of Lsi07G004780 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-32
Identity = 74/141 (52.48%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 7   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK---------NGSGGGRGGSGFGYG-GSDVR 66
           M+RPGDWNCR C HLNFQRRD CQRC +P+         +G GG    S FG+  G DVR
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 67  PGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD-------FDIPRPSPRGISPFTFA 126
           PGDWYC++G+CG HNFA+RSSCFKCGA KD+ S           D+     RG+  F  +
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGS 120

Query: 127 SP--ARTTASAWKSGDWICAR 129
           S     T  S WKSGDWIC R
Sbjct: 121 SSGGGGTGRSPWKSGDWICPR 141

[Close]

BLAST of Lsi07G004780 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-21
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 11  GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAH 70
           GDW C +CQH NF++R+ CQ+CG PK    GG   S + Y  ++V  GDWYC   NCG+H
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK---FGGVDVSTYLYNRTEVMAGDWYCGALNCGSH 65

Query: 71  NFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWICARL 130
           N+ASR+SC++CG  K + +   +        G     + +        WK+GDW+C R+
Sbjct: 66  NYASRTSCYRCGMIKVEYTEQYY--------GAQMVAYGNDGAACPPGWKTGDWVCPRV 113

[Close]

BLAST of Lsi07G004780 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-05
Identity = 27/84 (32.14%), Postives = 36/84 (42.86%), Query Frame = 0


Query: 1   MKEKKKMSRP---GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRP 60
           +KE++K   P   GDW C++C  LNF +   C RC D                    + P
Sbjct: 268 LKEEQKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPT--------------LRQINP 327

Query: 61  GDWYCSVGNCGAHNFASRSSCFKC 82
           G+W C   +C   NF   S C KC
Sbjct: 328 GEWECE--SCNYINFRRNSICLKC 335

[Close]

BLAST of Lsi07G004780 vs. TAIR 10
Match: AT1G70650.2 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-05
Identity = 27/84 (32.14%), Postives = 36/84 (42.86%), Query Frame = 0


Query: 1   MKEKKKMSRP---GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRP 60
           +KE++K   P   GDW C++C  LNF +   C RC D                    + P
Sbjct: 268 LKEEQKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPT--------------LRQINP 327

Query: 61  GDWYCSVGNCGAHNFASRSSCFKC 82
           G+W C   +C   NF   S C KC
Sbjct: 328 GEWECE--SCNYINFRRNSICLKC 335

The following BLAST results are available for this feature:

BLAST of Lsi07G004780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	3.9e-06	31.34	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	7.4e-05	53.19	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
P32770	6.2e-04	57.58	Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	[more]

BLAST of Lsi07G004780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRE1	1.0e-81	83.15	Putative RNA-binding protein C17H9.04c-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BZE4	9.5e-64	94.26	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KTI0	1.4e-62	93.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1	[more]
A0A6J1GWG9	2.9e-60	87.70	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1IX27	3.5e-58	86.89	ranBP2-type zinc finger protein At1g67325-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Lsi07G004780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044427.1	2.1e-81	83.15	putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa] >TYK29555...	[more]
XP_038892097.1	4.0e-64	95.08	zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida] >XP...	[more]
XP_008454250.1	2.0e-63	94.26	PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]	[more]
KGN52873.1	2.8e-62	93.44	hypothetical protein Csa_014917 [Cucumis sativus]	[more]
XP_022955940.1	5.9e-60	87.70	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >XP_0229...	[more]

BLAST of Lsi07G004780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	6.8e-38	56.16	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.9e-32	52.48	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	4.4e-21	39.50	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G70650.1	3.4e-05	32.14	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G70650.2	3.4e-05	32.14	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 58..84 e-value: 2.3E-5 score: 33.8 coord: 11..35 e-value: 9.1E-5 score: 31.8
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 56..83 e-value: 1.7E-5 score: 24.0
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 13..32
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 60..81
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 9..38 score: 9.732388
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 56..87 score: 9.890478
None	No IPR available	GENE3D	4.10.1060.10		coord: 52..87 e-value: 3.1E-12 score: 47.6 coord: 1..38 e-value: 5.2E-10 score: 40.4
None	No IPR available	PANTHER	PTHR23111:SF26	RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN	coord: 7..138
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 7..138
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 3..38
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 48..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G004780.1	Lsi07G004780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding