Lsi07G004680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G004680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DCC family protein At1g52590, chloroplastic
Location	chr07: 4957965 .. 4959829 (-)
RNA-Seq Expression	Lsi07G004680
Synteny	Lsi07G004680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAACATAATCTCTTTACAATTTTATAGTGTTTCAAAACAATTAAAAATTTCCTTCAAATTGGTGGAGGAAAAGCCAATCTGCAACTGCCACTGTCTCCAATGGCGCTTCCACTTCCCGGCGGAATTCCGGCACGTTTTGTCCCGCCGTCTACGGCGAAAGCTAGACTACCGCATCCAACTACTTCCGCCTCTTTATCTCCGATAACCAAAGACGAAACGATAGATTGGGTCGAAGCAACTTTCGACTTCTTCGAGAAAGATACGAGACCGATTATGCTATTTGACGGTACCGGCTTCTTTTAGTGTTTCGATTGCTGTTATTTCTAAATTAGCTAACATCTGATTCCTGATAGAATTGAATTGAAGTGAGATGGTTGTCTTTGGTTTTTCTGCGTTTTTTGGATTTGCGGTGAAAGTGAAGTATCGATGATTTTATTACTCTCTCAGGTGTGTGCAATTTGTGCAATGGAGGTGTAAGATTTGTTCGTGCTAATGATCGAAACAGGTGGGTCTCTTTTTCTTTTCATTTTTGTCTTCTATAGAAATTCTTGGAAAGGTAATTAAATTTGGAGCTGATTTTTGAGGCCCCGTACAGCATGGTGAATGACATTGTATTTTCAGGATCCATGGTTTATATGCTTTGATACCTTCATAATCTTATTGTCATGATTGAATTGCAGCCGCCATAAATTTAAGATTATGTGTTTCTGTAAATGGGCTATCATTGCTCTCTAAGGAGAAGTTAAGATTATTATTGTCGTTACCTTGGGACCTTATACTCCCTACCTTTGTGGATTTCCCATTGACATTTACAGAAGAATACGATTTGAGGCTCTCCAAAGTGAAGCTGGTACGAGGCTGTTAAGAAGGTCAGGAAGAGCACCGGATGATTTATCGAGTGTTGTAATTGTTGAAAAGGATAGGTATATGCATGCAGCTCCTCGTTTGAAGTTTCTCATGAGCTAGATTTGCCTATCTTATCCATGATCTATGGATTTTCTGATCTTTCTTTAAGAAACAAAAATCATAAATACGGGACAATAGATTTCTCCAAAATAGCAATCGTTATTACAGGACGATATGTTTCTCATAGTTATTGATTTCCCGGAAAAGGAAAGAAAGAGCCCCTGTTTTACTGAGAAAAAAATTTCTCTCAACTTCAACTATTGCCATCTTTTCAGTTAAAGATGTTGATGATAAATTTTAAATGCTGGATTGCAGATCTTATATCAAGTCTGAAGCTGTTCTAAGAATAATGGAACATTTAGAGTTACCCTTTCCTCAGCTTGCACTTTTTCTCCAGTTTGTGCCTCTGTAAGTCCTTCCTTACTATGTAAAGTTTTTCCCTGCACCACACATCTCTTCACAGAAAAAATCTAGTTTGAGCATATCTCTCTAATTTGGATTATTAATTGGCTAATTGCATTGCAGGTTTGTTCGAAATATTGTGTACGACAATATTGCAGATAATCGCTATACACTATTTGGACGCTCGGAGTCATGTGAAATATAGAATTACTTGTATTATTAGGATTTGTGTATAATACTTGGGAATTAGAAATTTAGAAGTTAAGATCTTTGTTTGGTAATTAATACTATCAGGAATTGGAGCTGATATCATGGCAAGCATAATAGACTTGCAGGGTCAACCTTTGGTATTGTTATCTGTTGCCTTTAAGAATTCTTAATGTTTGCTTAGTCAGTTCCTTTCATTGACCTTGGCATCACAACATTTCTAATATCTCCTTTGAGTATAAATATTTCTTCCTTCATTCACCTGAGTTTAATAAACTTCCAATGCAAAAATACATGCATTGTCTGTATTTCAATTGTTACTCCTATAATACAAATCTAAGGAAATT

mRNA sequence

ATTTAACATAATCTCTTTACAATTTTATAGTGTTTCAAAACAATTAAAAATTTCCTTCAAATTGGTGGAGGAAAAGCCAATCTGCAACTGCCACTGTCTCCAATGGCGCTTCCACTTCCCGGCGGAATTCCGGCACGTTTTGTCCCGCCGTCTACGGCGAAAGCTAGACTACCGCATCCAACTACTTCCGCCTCTTTATCTCCGATAACCAAAGACGAAACGATAGATTGGGTCGAAGCAACTTTCGACTTCTTCGAGAAAGATACGAGACCGATTATGCTATTTGACGGTGTGTGCAATTTGTGCAATGGAGGTGTAAGATTTGTTCGTGCTAATGATCGAAACAGAAGAATACGATTTGAGGCTCTCCAAAGTGAAGCTGGTACGAGGCTGTTAAGAAGGTCAGGAAGAGCACCGGATGATTTATCGAGTGTTGTAATTGTTGAAAAGGATAGGTATATGCATGCAGCTCCTCGTTTGAAATCTTATATCAAGTCTGAAGCTGTTCTAAGAATAATGGAACATTTAGAGTTACCCTTTCCTCAGCTTGCACTTTTTCTCCAGTTTGTGCCTCTGTTTGTTCGAAATATTGTGTACGACAATATTGCAGATAATCGCTATACACTATTTGGACGCTCGGAGTCATGTGAAATATAGAATTACTTGTATTATTAGGATTTGTGTATAATACTTGGGAATTAGAAATTTAGAAGTTAAGATCTTTGTTTGGTAATTAATACTATCAGGAATTGGAGCTGATATCATGGCAAGCATAATAGACTTGCAGGGTCAACCTTTGGTATTGTTATCTGTTGCCTTTAAGAATTCTTAATGTTTGCTTAGTCAGTTCCTTTCATTGACCTTGGCATCACAACATTTCTAATATCTCCTTTGAGTATAAATATTTCTTCCTTCATTCACCTGAGTTTAATAAACTTCCAATGCAAAAATACATGCATTGTCTGTATTTCAATTGTTACTCCTATAATACAAATCTAAGGAAATT

Coding sequence (CDS)

ATGGCGCTTCCACTTCCCGGCGGAATTCCGGCACGTTTTGTCCCGCCGTCTACGGCGAAAGCTAGACTACCGCATCCAACTACTTCCGCCTCTTTATCTCCGATAACCAAAGACGAAACGATAGATTGGGTCGAAGCAACTTTCGACTTCTTCGAGAAAGATACGAGACCGATTATGCTATTTGACGGTGTGTGCAATTTGTGCAATGGAGGTGTAAGATTTGTTCGTGCTAATGATCGAAACAGAAGAATACGATTTGAGGCTCTCCAAAGTGAAGCTGGTACGAGGCTGTTAAGAAGGTCAGGAAGAGCACCGGATGATTTATCGAGTGTTGTAATTGTTGAAAAGGATAGGTATATGCATGCAGCTCCTCGTTTGAAATCTTATATCAAGTCTGAAGCTGTTCTAAGAATAATGGAACATTTAGAGTTACCCTTTCCTCAGCTTGCACTTTTTCTCCAGTTTGTGCCTCTGTTTGTTCGAAATATTGTGTACGACAATATTGCAGATAATCGCTATACACTATTTGGACGCTCGGAGTCATGTGAAATATAG

Protein sequence

MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIMLFDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYMHAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSESCEI

Homology

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BLAST of Lsi07G004680 vs. ExPASy Swiss-Prot
Match: Q9SSR1 (DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g52590 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-54
Identity = 112/184 (60.87%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIML 60
           MA+ +P     R    S A+ R+   + SA+   I +D ++DWV+ T  FFE+D RPIML
Sbjct: 1   MAILIPASF-GRLTITSRAQVRV-RVSASANQRTIRRD-SVDWVKETSSFFEEDKRPIML 60

Query: 61  FDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYM 120
           FDGVCNLCNGGV+FVR +DRNR IRFEALQSEAG +LL RSGRAPDD+SSVV+VE DR  
Sbjct: 61  FDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDISSVVLVENDR-- 120

Query: 121 HAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 180
                  SYIKSEAVL+IM++++LPFPQLA FLQF PLFVR+ +Y+N+A+NRY +FGRS+
Sbjct: 121 -------SYIKSEAVLKIMKYIDLPFPQLAFFLQFAPLFVRDFLYENVANNRYAMFGRSD 172

Query: 181 SCEI 185
           SCE+
Sbjct: 181 SCEL 172

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BLAST of Lsi07G004680 vs. ExPASy Swiss-Prot
Match: P40761 (Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168) OX=224308 GN=yuxK PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-18
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 58  IMLFDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKD 117
           ++LFDGVCNLCNG V+F+   D +  I F +LQSE G  LL++SG   D   S V +E  
Sbjct: 10  VLLFDGVCNLCNGAVQFIIKRDPDGLISFTSLQSETGQSLLKKSGLPTDRFDSFVFIEDG 69

Query: 118 RYMHAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFG 177
           +          Y KS A +++  HL  P+    LF   VP  VR++VY  IA NRY  FG
Sbjct: 70  QV---------YTKSTAAIKVFRHLRGPWRLFVLFFA-VPKPVRDMVYSFIAKNRYKWFG 124

Query: 178 RSESC 183
           +   C
Sbjct: 130 KKNEC 124

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BLAST of Lsi07G004680 vs. ExPASy TrEMBL
Match: A0A5D3E0H0 (DCC family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001690 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.6e-76
Identity = 155/185 (83.78%), Postives = 161/185 (87.03%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKA-RLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIM 60
           MALPL G  PA F+PPS  KA  L HP  SASLSPITKDETIDWVEAT DFFEKDTRPIM
Sbjct: 10  MALPLSGRFPAPFLPPSMRKAGMLLHPIASASLSPITKDETIDWVEATSDFFEKDTRPIM 69

Query: 61  LFDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRY 120
           LFDGVCNLCNGGVRFVRANDRNRRIR EALQS+AG +LLRRSGRAPDD+SSVV+VEKDR 
Sbjct: 70  LFDGVCNLCNGGVRFVRANDRNRRIRLEALQSDAGKKLLRRSGRAPDDISSVVLVEKDR- 129

Query: 121 MHAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRS 180
                   SYIKSEAVLRIME+LELPFPQLA FLQFVPLFVRNIVYDNIADNRYTLFGRS
Sbjct: 130 --------SYIKSEAVLRIMEYLELPFPQLAFFLQFVPLFVRNIVYDNIADNRYTLFGRS 185

Query: 181 ESCEI 185
           ESCEI
Sbjct: 190 ESCEI 185

[Close]

BLAST of Lsi07G004680 vs. ExPASy TrEMBL
Match: A0A1S3BZD9 (DCC family protein At1g52590, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494707 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.6e-76
Identity = 155/185 (83.78%), Postives = 161/185 (87.03%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKA-RLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIM 60
           MALPL G  PA F+PPS  KA  L HP  SASLSPITKDETIDWVEAT DFFEKDTRPIM
Sbjct: 10  MALPLSGRFPAPFLPPSMRKAGMLLHPIASASLSPITKDETIDWVEATSDFFEKDTRPIM 69

Query: 61  LFDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRY 120
           LFDGVCNLCNGGVRFVRANDRNRRIR EALQS+AG +LLRRSGRAPDD+SSVV+VEKDR 
Sbjct: 70  LFDGVCNLCNGGVRFVRANDRNRRIRLEALQSDAGKKLLRRSGRAPDDISSVVLVEKDR- 129

Query: 121 MHAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRS 180
                   SYIKSEAVLRIME+LELPFPQLA FLQFVPLFVRNIVYDNIADNRYTLFGRS
Sbjct: 130 --------SYIKSEAVLRIMEYLELPFPQLAFFLQFVPLFVRNIVYDNIADNRYTLFGRS 185

Query: 181 ESCEI 185
           ESCEI
Sbjct: 190 ESCEI 185

[Close]

BLAST of Lsi07G004680 vs. ExPASy TrEMBL
Match: A0A0A0KVF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004930 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 153/184 (83.15%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIML 60
           MALPL G  PA F+PPS  KA L HP  SASLSP  KDETIDWVEAT +FFEKDTRPIML
Sbjct: 10  MALPLSGRFPAPFLPPSMRKAGLLHPIASASLSPTIKDETIDWVEATSNFFEKDTRPIML 69

Query: 61  FDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYM 120
           FDGVCNLCNGGVRFVRANDRNRRIR EALQS+AG +LLRRSGRAPDD+SSVV+VEKDR  
Sbjct: 70  FDGVCNLCNGGVRFVRANDRNRRIRLEALQSDAGKKLLRRSGRAPDDISSVVLVEKDR-- 129

Query: 121 HAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 180
                  SYIKSEAVLRIME+LELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE
Sbjct: 130 -------SYIKSEAVLRIMEYLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 184

Query: 181 SCEI 185
           SCEI
Sbjct: 190 SCEI 184

[Close]

BLAST of Lsi07G004680 vs. ExPASy TrEMBL
Match: A0A6J1DJB0 (DCC family protein At1g52590, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021048 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.5e-74
Identity = 146/184 (79.35%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIML 60
           MA+P+PG IPARF+PP  A+AR  H    ASLSP TK ETIDW+EAT DFFEKD+RPIML
Sbjct: 49  MAIPVPGRIPARFLPPPQAQARPRHSIAFASLSPATKGETIDWIEATSDFFEKDSRPIML 108

Query: 61  FDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYM 120
           FDGVCNLCNGGVRFVRANDRNRRIR EALQSEAG +LLRRSGRAPDD+SSVV+VEKDR  
Sbjct: 109 FDGVCNLCNGGVRFVRANDRNRRIRLEALQSEAGKKLLRRSGRAPDDISSVVLVEKDR-- 168

Query: 121 HAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 180
                  SYIKSEAV+RIMEHLELPFPQLA FLQFVPLFVRN VY+N+ADNRY LFGRSE
Sbjct: 169 -------SYIKSEAVIRIMEHLELPFPQLAFFLQFVPLFVRNFVYENVADNRYRLFGRSE 223

Query: 181 SCEI 185
           SCEI
Sbjct: 229 SCEI 223

[Close]

BLAST of Lsi07G004680 vs. ExPASy TrEMBL
Match: A0A6J1IYJ5 (DCC family protein At1g52590, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479639 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.4e-74
Identity = 150/184 (81.52%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIML 60
           MALPL G +PARFV PSTA  R   P    SLS  T D TIDWVEAT DFFEKDTRPIML
Sbjct: 1   MALPLSGRVPARFVLPSTAHVRPRQPVAFVSLSSATNDGTIDWVEATSDFFEKDTRPIML 60

Query: 61  FDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYM 120
           FDGVCNLCNGGVRFVRANDRNRRIR EALQSEAG +LLRRSGRAPDD+SSVV+VEKDR  
Sbjct: 61  FDGVCNLCNGGVRFVRANDRNRRIRLEALQSEAGKKLLRRSGRAPDDISSVVLVEKDR-- 120

Query: 121 HAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 180
                  SYIKSEAVLRIMEHLELPFPQLALFL+FVPLFVRNI YDNIADNRYTLFGRSE
Sbjct: 121 -------SYIKSEAVLRIMEHLELPFPQLALFLKFVPLFVRNIAYDNIADNRYTLFGRSE 175

Query: 181 SCEI 185
           SCEI
Sbjct: 181 SCEI 175

[Close]

BLAST of Lsi07G004680 vs. NCBI nr
Match: XP_038900615.1 (DCC family protein At1g52590, chloroplastic [Benincasa hispida])

HSP 1 Score: 312.0 bits (798), Expect = 3.4e-81
Identity = 161/184 (87.50%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIML 60
           MALPL GGIPARFVPPS AKAR PH  +SASLSP TKDETIDWVEAT DFFEKDTRPIML
Sbjct: 1   MALPLSGGIPARFVPPSLAKARPPHTISSASLSPTTKDETIDWVEATSDFFEKDTRPIML 60

Query: 61  FDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYM 120
           FDGVCNLCNGGVRFVRANDRNRRIR EALQSEAG +LLRRSGRAPDD+SSVV+VEKDR  
Sbjct: 61  FDGVCNLCNGGVRFVRANDRNRRIRLEALQSEAGKKLLRRSGRAPDDISSVVLVEKDR-- 120

Query: 121 HAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 180
                  SYIKSEAVLRIME+LELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE
Sbjct: 121 -------SYIKSEAVLRIMEYLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 175

Query: 181 SCEI 185
           SCEI
Sbjct: 181 SCEI 175

[Close]

BLAST of Lsi07G004680 vs. NCBI nr
Match: XP_008454244.1 (PREDICTED: DCC family protein At1g52590, chloroplastic [Cucumis melo] >TYK29563.1 DCC family protein [Cucumis melo var. makuwa])

HSP 1 Score: 295.4 bits (755), Expect = 3.3e-76
Identity = 155/185 (83.78%), Postives = 161/185 (87.03%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKA-RLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIM 60
           MALPL G  PA F+PPS  KA  L HP  SASLSPITKDETIDWVEAT DFFEKDTRPIM
Sbjct: 10  MALPLSGRFPAPFLPPSMRKAGMLLHPIASASLSPITKDETIDWVEATSDFFEKDTRPIM 69

Query: 61  LFDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRY 120
           LFDGVCNLCNGGVRFVRANDRNRRIR EALQS+AG +LLRRSGRAPDD+SSVV+VEKDR 
Sbjct: 70  LFDGVCNLCNGGVRFVRANDRNRRIRLEALQSDAGKKLLRRSGRAPDDISSVVLVEKDR- 129

Query: 121 MHAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRS 180
                   SYIKSEAVLRIME+LELPFPQLA FLQFVPLFVRNIVYDNIADNRYTLFGRS
Sbjct: 130 --------SYIKSEAVLRIMEYLELPFPQLAFFLQFVPLFVRNIVYDNIADNRYTLFGRS 185

Query: 181 ESCEI 185
           ESCEI
Sbjct: 190 ESCEI 185

[Close]

BLAST of Lsi07G004680 vs. NCBI nr
Match: XP_004152205.1 (DCC family protein At1g52590, chloroplastic [Cucumis sativus] >KGN52884.1 hypothetical protein Csa_015353 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 4.3e-76
Identity = 153/184 (83.15%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIML 60
           MALPL G  PA F+PPS  KA L HP  SASLSP  KDETIDWVEAT +FFEKDTRPIML
Sbjct: 10  MALPLSGRFPAPFLPPSMRKAGLLHPIASASLSPTIKDETIDWVEATSNFFEKDTRPIML 69

Query: 61  FDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYM 120
           FDGVCNLCNGGVRFVRANDRNRRIR EALQS+AG +LLRRSGRAPDD+SSVV+VEKDR  
Sbjct: 70  FDGVCNLCNGGVRFVRANDRNRRIRLEALQSDAGKKLLRRSGRAPDDISSVVLVEKDR-- 129

Query: 121 HAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 180
                  SYIKSEAVLRIME+LELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE
Sbjct: 130 -------SYIKSEAVLRIMEYLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 184

Query: 181 SCEI 185
           SCEI
Sbjct: 190 SCEI 184

[Close]

BLAST of Lsi07G004680 vs. NCBI nr
Match: XP_022153577.1 (DCC family protein At1g52590, chloroplastic [Momordica charantia])

HSP 1 Score: 288.9 bits (738), Expect = 3.1e-74
Identity = 146/184 (79.35%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIML 60
           MA+P+PG IPARF+PP  A+AR  H    ASLSP TK ETIDW+EAT DFFEKD+RPIML
Sbjct: 49  MAIPVPGRIPARFLPPPQAQARPRHSIAFASLSPATKGETIDWIEATSDFFEKDSRPIML 108

Query: 61  FDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYM 120
           FDGVCNLCNGGVRFVRANDRNRRIR EALQSEAG +LLRRSGRAPDD+SSVV+VEKDR  
Sbjct: 109 FDGVCNLCNGGVRFVRANDRNRRIRLEALQSEAGKKLLRRSGRAPDDISSVVLVEKDR-- 168

Query: 121 HAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 180
                  SYIKSEAV+RIMEHLELPFPQLA FLQFVPLFVRN VY+N+ADNRY LFGRSE
Sbjct: 169 -------SYIKSEAVIRIMEHLELPFPQLAFFLQFVPLFVRNFVYENVADNRYRLFGRSE 223

Query: 181 SCEI 185
           SCEI
Sbjct: 229 SCEI 223

[Close]

BLAST of Lsi07G004680 vs. NCBI nr
Match: XP_022980169.1 (DCC family protein At1g52590, chloroplastic [Cucurbita maxima])

HSP 1 Score: 287.3 bits (734), Expect = 9.1e-74
Identity = 150/184 (81.52%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIML 60
           MALPL G +PARFV PSTA  R   P    SLS  T D TIDWVEAT DFFEKDTRPIML
Sbjct: 1   MALPLSGRVPARFVLPSTAHVRPRQPVAFVSLSSATNDGTIDWVEATSDFFEKDTRPIML 60

Query: 61  FDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYM 120
           FDGVCNLCNGGVRFVRANDRNRRIR EALQSEAG +LLRRSGRAPDD+SSVV+VEKDR  
Sbjct: 61  FDGVCNLCNGGVRFVRANDRNRRIRLEALQSEAGKKLLRRSGRAPDDISSVVLVEKDR-- 120

Query: 121 HAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 180
                  SYIKSEAVLRIMEHLELPFPQLALFL+FVPLFVRNI YDNIADNRYTLFGRSE
Sbjct: 121 -------SYIKSEAVLRIMEHLELPFPQLALFLKFVPLFVRNIAYDNIADNRYTLFGRSE 175

Query: 181 SCEI 185
           SCEI
Sbjct: 181 SCEI 175

[Close]

BLAST of Lsi07G004680 vs. TAIR 10
Match: AT1G52590.1 (Putative thiol-disulphide oxidoreductase DCC )

HSP 1 Score: 214.2 bits (544), Expect = 9.1e-56
Identity = 112/184 (60.87%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 1   MALPLPGGIPARFVPPSTAKARLPHPTTSASLSPITKDETIDWVEATFDFFEKDTRPIML 60
           MA+ +P     R    S A+ R+   + SA+   I +D ++DWV+ T  FFE+D RPIML
Sbjct: 1   MAILIPASF-GRLTITSRAQVRV-RVSASANQRTIRRD-SVDWVKETSSFFEEDKRPIML 60

Query: 61  FDGVCNLCNGGVRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSSVVIVEKDRYM 120
           FDGVCNLCNGGV+FVR +DRNR IRFEALQSEAG +LL RSGRAPDD+SSVV+VE DR  
Sbjct: 61  FDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDISSVVLVENDR-- 120

Query: 121 HAAPRLKSYIKSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSE 180
                  SYIKSEAVL+IM++++LPFPQLA FLQF PLFVR+ +Y+N+A+NRY +FGRS+
Sbjct: 121 -------SYIKSEAVLKIMKYIDLPFPQLAFFLQFAPLFVRDFLYENVANNRYAMFGRSD 172

Query: 181 SCEI 185
           SCE+
Sbjct: 181 SCEL 172

[Close]

BLAST of Lsi07G004680 vs. TAIR 10
Match: AT1G24095.1 (Putative thiol-disulphide oxidoreductase DCC )

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16
Identity = 57/172 (33.14%), Postives = 90/172 (52.33%), Query Frame = 0


Query: 24  PHPT-TSASLSPITKDETIDWVEATFDFFEKDTR-----------PIMLFDGVCNLCNGG 83
           P P  ++ ++S  T +   D V A  D  E  T+            ++++DGVC+LC+GG
Sbjct: 29  PSPAFSTGAISRTTAEIDADEVTACLDPAESVTKIPVIMPGNLQPRVVVYDGVCHLCHGG 88

Query: 84  VRFVRANDRNRRIRFEALQSEAGTRLLRRSGRAPDDLSS-VVIVEKDRYMHAAPRLKSYI 143
           V+++   D+ R+I+F  LQS+A    L  SG   +D+    + +E   + H A       
Sbjct: 89  VKWIIKADKYRKIKFCCLQSKAAEPYLEVSGVTREDVQKRFLFIEGLGFYHQA------- 148

Query: 144 KSEAVLRIMEHLELPFPQLALFLQFVPLFVRNIVYDNIADNRYTLFGRSESC 183
            S A LR++ +L LP+  L  F   VP  +R+ VYD +A NRY  FG++E C
Sbjct: 149 -STAALRVVSYLPLPYSALNAF-SIVPTPLRDSVYDYVAKNRYDWFGKAEDC 191

The following BLAST results are available for this feature:

BLAST of Lsi07G004680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSR1	1.3e-54	60.87	DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
P40761	2.5e-18	41.60	Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168) OX=224308 GN=yuxK...	[more]

BLAST of Lsi07G004680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0H0	1.6e-76	83.78	DCC family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G0...	[more]
A0A1S3BZD9	1.6e-76	83.78	DCC family protein At1g52590, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494...	[more]
A0A0A0KVF0	2.1e-76	83.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004930 PE=4 SV=1	[more]
A0A6J1DJB0	1.5e-74	79.35	DCC family protein At1g52590, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1IYJ5	4.4e-74	81.52	DCC family protein At1g52590, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Lsi07G004680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900615.1	3.4e-81	87.50	DCC family protein At1g52590, chloroplastic [Benincasa hispida]	[more]
XP_008454244.1	3.3e-76	83.78	PREDICTED: DCC family protein At1g52590, chloroplastic [Cucumis melo] >TYK29563....	[more]
XP_004152205.1	4.3e-76	83.15	DCC family protein At1g52590, chloroplastic [Cucumis sativus] >KGN52884.1 hypoth...	[more]
XP_022153577.1	3.1e-74	79.35	DCC family protein At1g52590, chloroplastic [Momordica charantia]	[more]
XP_022980169.1	9.1e-74	81.52	DCC family protein At1g52590, chloroplastic [Cucurbita maxima]	[more]

BLAST of Lsi07G004680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52590.1	9.1e-56	60.87	Putative thiol-disulphide oxidoreductase DCC	[more]
AT1G24095.1	2.4e-16	33.14	Putative thiol-disulphide oxidoreductase DCC	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007263	DCC1-like thiol-disulfide oxidoreductase family	PFAM	PF04134	DUF393	coord: 60..178 e-value: 6.9E-27 score: 95.0
None	No IPR available	PANTHER	PTHR33639	THIOL-DISULFIDE OXIDOREDUCTASE DCC	coord: 25..184
None	No IPR available	PANTHER	PTHR33639:SF2	THIOL-DISULFIDE OXIDOREDUCTASE DCC	coord: 25..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G004680.1	Lsi07G004680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0015035	protein-disulfide reductase activity