Lsi07G001410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G001410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L13
Location	chr07: 1528985 .. 1531605 (+)
RNA-Seq Expression	Lsi07G001410
Synteny	Lsi07G001410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAAATAAATTAGGGTTCCGGCTAACGAGGATCTAGTGGCTGGAAGTCTGAGAGAGAGAGGTCACTCCGCCGCGTTGTAAGTTTTCACCGTCTTTCATATCTTCCGATCTCTAATCGCTTTGTACTCTTCTCTTTTTGATTGAAGGTTGTGATACCAATGGCTTCTCATCATTGTATTTTGGTTACAATGTACAATCTGAAAGTTTTGCTCTATATTCGGTTGTGTTTGTTTATCGTAATCTTTTATACGAGCGGCTGGTTTCTATATTGTTCCTTTTTAGTAGTTTCGCTGCAGTAATTGAATCGATTCTGCATTTGTTTTTTGTTTTAAAATTTTTTCTGGAGTTTCTGTTTGGGTTTTTGGATTACTACTTGTCTAGTTTTTCGAAGTTCTATACTTCTATCTGCCAGAGCGTTTGCGATTTGTGCTCTCTACTACTGTTTCTTGATAAGTTTATCTGTGATTTGCTGGAGTAGACAAGGTGGCTGGTTCTGTCTCATAATAATACGTTTGATTGAATTGCGATTCTTTTGTCCTCCCCCTTCCTAACGAGCAAATGGTTGAATGGTTAGTTTTTTTGTAGCTGTTGATTGGATTAAGTATCTTCGGCTGATTTGGCCTAATGATTCTGGTTTGAAGAAAATGCATTTATAGTGATTATTATGGATTTTATACTTGATTGTATGTATATTCCAAGCTGCTGGACTCCATTTGTTTTTGTTCTTTTTCTTGCAGCCTTATTTAGCTGTTGAGTTTCCTTTGTAGTGGCTGTTTTCATTGTTATGTTTACTCCTAACATTACGAAGTTGGAGAAAAAACTCATTTTTAAGTTAGTTACAATATGGTTAATCGAAGTTTAAGTTGAGTTGCTGGTAATTATTGGAAATGTAATATATTAACTCTCCTATCTTTTAATAATCGTGTCTATTGACGAATTGGGTTTTGTCATTACTACCTAGAGAAGATGATCTTGTATATGGTGTTTTTTTCCCTCTAAATTTATCGAGTCAAAATAGTTGGGTAGGATGGAATCGCTTGTGGTTCTTGTTTCTTCTCCTTCTTTCCTTCTAATTGAGTCTGTTTACTTCTGGTTTGTTAGAGGTAAAAAATGAAGCACAACAATGTTATCCCTAGCGGTCACTTCAGGAAGCACTGGCAGAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGAAAAACTAGGAGAAGAAATGGTAAGTGCTGTTTTTGTTTTATATTCTATCTTCTTGTGCTCTAGTTGGTGTCTGTTCATCACTGGAACTTAGAATATGCTTGAGATATGTAACTCTAACTATGAACTTGATGATTCTACGATCAGCTCGTCAGGAGAAAGCTGTGAAGAACTTCCCCCGCCCAACTGCTGGACCACTCCGTCCCATTGTTCATGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGTAGGGGCTTTTCTCTTGAGGAGTTGAAGGTATTCAGTTTTCTCCTCTATTTTTAGTTTCTTGCTTTCTTGGCCATCTTCCTGGCCCCTTTAGGGTCTTGGCAGTAGAGTTTTATAGTTGTGGATAAATGTCAATTGGTTTCTTGGTGTATATTGTAGTAAGATCTCTCACATCATGTTTTTCAGTTTGGATCTCAGCCTACATTAAATGAAACTTAATCTTCTACTTAGCTGAATATTTTATGTATCTAGATTCCGTTATCGGTCAGTTGGGAAGTTTCATTGTCTTTAAGAACTTTAGGTTATGATCATTTATACCCCATCTTAATTATCTAGTATCTGCTGCTCAGGCTGCAGGTATTCCCAAGAAACTAGCACCAACCATTGGAATATCAGTTGACCATCGCCGTAGGAACCGCTCCCTTGAAAGTCTACAGACTAATGTGCAGAGGCTGAAGACATACAAGGCCAAGGTGGTTGTCTTCCCAAGACGTGCTCGCAAATTTAAGGTTAGTTCATCGAAAATAATAGAACTTGGTTGAATGTTATCAAGTACTTTTTATGTACTGGATGTATCATCTCAACATTTTGGCTGTATGAATGTTGTAGGCTGGTGATTCTACTCCAGAGGAGCTCGCAAATGCCACCCAAGTCCAAGGACCATACCTACCTATTGGGCGTGAGAAGGCAGCAGTTGAGCTTGTGAAGGTCACTGAGGACATGAAATCGTTTAAGGCATACGACAAGCTACGTGTTGAGAGGACAAACGCACGACATGTCGGAGCTAGATTGAAGAAGGCAGCAGAGGCCGAGAAGGAAGATAAGAAGTAGATTGCCAGAACAACTGCTTAGAGGTTGTTCTATTTACCGAATTTTGGTATTTATTTTTACAAGATTTTTGATTTGACATATCTTCTGGACTTAATTTGGTAGATGAAAGTTCTGAGTTCATGGATTCAAGGGTATTGACATTTGTTTTTGGACTTGTGGTTTATCGCATCCAAAATAGTTTTTTGCAATCTTTCCATTTGGTTTTAATAATTTAAATTTTATTTTGATGGTATGAAAATCAAATTAATCACTAAGTTGATTTTGAGTGTACGTACATGGTTTATGGTACTAATTTTAACAATTTAAAAATTACTTTTATCGGCTTCTGAGAAATTATCATTCAGT

mRNA sequence

TACAAATAAATTAGGGTTCCGGCTAACGAGGATCTAGTGGCTGGAAGTCTGAGAGAGAGAGGTCACTCCGCCGCGTTAGGTAAAAAATGAAGCACAACAATGTTATCCCTAGCGGTCACTTCAGGAAGCACTGGCAGAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGAAAAACTAGGAGAAGAAATGCTCGTCAGGAGAAAGCTGTGAAGAACTTCCCCCGCCCAACTGCTGGACCACTCCGTCCCATTGTTCATGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGTAGGGGCTTTTCTCTTGAGGAGTTGAAGGCTGCAGGTATTCCCAAGAAACTAGCACCAACCATTGGAATATCAGTTGACCATCGCCGTAGGAACCGCTCCCTTGAAAGTCTACAGACTAATGTGCAGAGGCTGAAGACATACAAGGCCAAGGTGGTTGTCTTCCCAAGACGTGCTCGCAAATTTAAGGCTGGTGATTCTACTCCAGAGGAGCTCGCAAATGCCACCCAAGTCCAAGGACCATACCTACCTATTGGGCGTGAGAAGGCAGCAGTTGAGCTTGTGAAGGTCACTGAGGACATGAAATCGTTTAAGGCATACGACAAGCTACGTGTTGAGAGGACAAACGCACGACATGTCGGAGCTAGATTGAAGAAGGCAGCAGAGGCCGAGAAGGAAGATAAGAAGTAGATTGCCAGAACAACTGCTTAGAGGTTGTTCTATTTACCGAATTTTGGTATTTATTTTTACAAGATTTTTGATTTGACATATCTTCTGGACTTAATTTGGTAGATGAAAGTTCTGAGTTCATGGATTCAAGGGTATTGACATTTGTTTTTGGACTTGTGGTTTATCGCATCCAAAATAGTTTTTTGCAATCTTTCCATTTGGTTTTAATAATTTAAATTTTATTTTGATGGTATGAAAATCAAATTAATCACTAAGTTGATTTTGAGTGTACGTACATGGTTTATGGTACTAATTTTAACAATTTAAAAATTACTTTTATCGGCTTCTGAGAAATTATCATTCAGT

Coding sequence (CDS)

ATGAAGCACAACAATGTTATCCCTAGCGGTCACTTCAGGAAGCACTGGCAGAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGAAAAACTAGGAGAAGAAATGCTCGTCAGGAGAAAGCTGTGAAGAACTTCCCCCGCCCAACTGCTGGACCACTCCGTCCCATTGTTCATGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGTAGGGGCTTTTCTCTTGAGGAGTTGAAGGCTGCAGGTATTCCCAAGAAACTAGCACCAACCATTGGAATATCAGTTGACCATCGCCGTAGGAACCGCTCCCTTGAAAGTCTACAGACTAATGTGCAGAGGCTGAAGACATACAAGGCCAAGGTGGTTGTCTTCCCAAGACGTGCTCGCAAATTTAAGGCTGGTGATTCTACTCCAGAGGAGCTCGCAAATGCCACCCAAGTCCAAGGACCATACCTACCTATTGGGCGTGAGAAGGCAGCAGTTGAGCTTGTGAAGGTCACTGAGGACATGAAATCGTTTAAGGCATACGACAAGCTACGTGTTGAGAGGACAAACGCACGACATGTCGGAGCTAGATTGAAGAAGGCAGCAGAGGCCGAGAAGGAAGATAAGAAGTAG

Protein sequence

MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKAKVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKLRVERTNARHVGARLKKAAEAEKEDKK

Homology

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BLAST of Lsi07G001410 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.3e-95
Identity = 172/206 (83.50%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQTNVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK  +ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. ExPASy Swiss-Prot
Match: Q9FF90 (60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.3e-95
Identity = 173/206 (83.98%), Postives = 193/206 (93.69%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKKLAPTIGISVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELANATQVQG Y+PI   KAA+ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTNARH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. ExPASy Swiss-Prot
Match: P41129 (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 5.4e-94
Identity = 170/206 (82.52%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGIS+DHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELANATQVQG Y+PI REK A+ELVK+T +MKS  AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AA+AEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. ExPASy Swiss-Prot
Match: P41128 (60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.0e-93
Identity = 169/206 (82.04%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELK+AGIPKKLAPTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELANATQVQG Y+PI REK A ELVK+T +MKS KA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AA+AEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. ExPASy Swiss-Prot
Match: Q9SMT4 (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.2e-82
Identity = 154/206 (74.76%), Postives = 174/206 (84.47%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+K W+NYV+T FNQPA KTRRR ARQ KAVK FPRPTAGP+RP+VH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TL YNMKVRAG+GF+LEELKAAGIPKKLAPTIGISVDH R+NRSLE  QTNVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPR AR  K GDS  +ELANATQVQ  ++PI RE   +ELVK+T DMK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+E  N RH G R K+AAEAEKE+KK
Sbjct: 181 RLEGINKRHAGVRAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. ExPASy TrEMBL
Match: A0A0A0KU76 (60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_4G025200 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.5e-107
Identity = 201/206 (97.57%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA+VELVKVTE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVERTNARHVGARLK+AAEAEKEDKK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEDKK 206

[Close]

BLAST of Lsi07G001410 vs. ExPASy TrEMBL
Match: A0A5A7TNJ5 (60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004500 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.6e-107
Identity = 201/206 (97.57%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA+VELVKVTEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVER NARHVGARLKKAAEAEKEDKK
Sbjct: 181 RVERMNARHVGARLKKAAEAEKEDKK 206

[Close]

BLAST of Lsi07G001410 vs. ExPASy TrEMBL
Match: A0A1S3BWP2 (60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103494439 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.6e-107
Identity = 201/206 (97.57%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA+VELVKVTEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVER NARHVGARLKKAAEAEKEDKK
Sbjct: 181 RVERMNARHVGARLKKAAEAEKEDKK 206

[Close]

BLAST of Lsi07G001410 vs. ExPASy TrEMBL
Match: A0A6J1E5R8 (60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111430838 PE=3 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 2.9e-106
Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA VELVKVTE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNERHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. ExPASy TrEMBL
Match: A0A6J1J2K7 (60S ribosomal protein L13 OS=Cucurbita maxima OX=3661 GN=LOC111482837 PE=3 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.4e-106
Identity = 198/206 (96.12%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA VELVKVTE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNERHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: XP_011653106.1 (60S ribosomal protein L13-3 [Cucumis sativus] >KGN53190.1 hypothetical protein Csa_014855 [Cucumis sativus])

HSP 1 Score: 398.7 bits (1023), Expect = 3.1e-107
Identity = 201/206 (97.57%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA+VELVKVTE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVERTNARHVGARLK+AAEAEKEDKK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEDKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: XP_008453835.1 (PREDICTED: 60S ribosomal protein L13-3 [Cucumis melo] >KAA0044694.1 60S ribosomal protein L13-3 [Cucumis melo var. makuwa])

HSP 1 Score: 397.9 bits (1021), Expect = 5.3e-107
Identity = 201/206 (97.57%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA+VELVKVTEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVER NARHVGARLKKAAEAEKEDKK
Sbjct: 181 RVERMNARHVGARLKKAAEAEKEDKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: XP_022923040.1 (60S ribosomal protein L13-1 [Cucurbita moschata] >XP_022923041.1 60S ribosomal protein L13-1 [Cucurbita moschata])

HSP 1 Score: 394.4 bits (1012), Expect = 5.9e-106
Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA VELVKVTE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNERHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: XP_022984589.1 (60S ribosomal protein L13-1 [Cucurbita maxima] >XP_022984592.1 60S ribosomal protein L13-1 [Cucurbita maxima] >XP_022984593.1 60S ribosomal protein L13-1 [Cucurbita maxima] >XP_023551630.1 60S ribosomal protein L13-1 [Cucurbita pepo subsp. pepo] >XP_023551639.1 60S ribosomal protein L13-1 [Cucurbita pepo subsp. pepo] >XP_023551649.1 60S ribosomal protein L13-1 [Cucurbita pepo subsp. pepo] >XP_023553206.1 60S ribosomal protein L13-1 [Cucurbita pepo subsp. pepo] >XP_023553207.1 60S ribosomal protein L13-1 [Cucurbita pepo subsp. pepo] >KAG6576840.1 hypothetical protein SDJN03_24414, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030875.1 hypothetical protein SDJN02_04912 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6600214.1 hypothetical protein SDJN03_05447, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105
Identity = 198/206 (96.12%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA VELVKVTE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNERHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: XP_022990054.1 (60S ribosomal protein L13-1-like [Cucurbita maxima] >XP_022990133.1 60S ribosomal protein L13-1-like [Cucurbita maxima])

HSP 1 Score: 392.5 bits (1007), Expect = 2.2e-105
Identity = 197/206 (95.63%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA VE+VKVTE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAPVEIVKVTEEMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNERHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. TAIR 10
Match: AT3G49010.1 (breast basic conserved 1 )

HSP 1 Score: 350.5 bits (898), Expect = 9.1e-97
Identity = 172/206 (83.50%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQTNVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK  +ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. TAIR 10
Match: AT3G49010.2 (breast basic conserved 1 )

HSP 1 Score: 350.5 bits (898), Expect = 9.1e-97
Identity = 172/206 (83.50%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQTNVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK  +ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. TAIR 10
Match: AT3G49010.3 (breast basic conserved 1 )

HSP 1 Score: 350.5 bits (898), Expect = 9.1e-97
Identity = 172/206 (83.50%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQTNVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK  +ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. TAIR 10
Match: AT5G23900.1 (Ribosomal protein L13e family protein )

HSP 1 Score: 350.5 bits (898), Expect = 9.1e-97
Identity = 173/206 (83.98%), Postives = 193/206 (93.69%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKKLAPTIGISVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELANATQVQG Y+PI   KAA+ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTNARH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. TAIR 10
Match: AT3G49010.4 (breast basic conserved 1 )

HSP 1 Score: 344.4 bits (882), Expect = 6.5e-95
Identity = 171/206 (83.01%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQTNVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRAR  KAGDSTPEELANATQVQG YLPI REK  +ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRAR--KAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 204

The following BLAST results are available for this feature:

BLAST of Lsi07G001410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41127	1.3e-95	83.50	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]
Q9FF90	1.3e-95	83.98	60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1	[more]
P41129	5.4e-94	82.52	60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
P41128	2.0e-93	82.04	60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q9SMT4	6.2e-82	74.76	Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C P...	[more]

BLAST of Lsi07G001410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU76	1.5e-107	97.57	60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_4G025200 PE=3 SV=1	[more]
A0A5A7TNJ5	2.6e-107	97.57	60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3BWP2	2.6e-107	97.57	60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103494439 PE=3 SV=1	[more]
A0A6J1E5R8	2.9e-106	96.60	60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111430838 PE=3 SV=...	[more]
A0A6J1J2K7	6.4e-106	96.12	60S ribosomal protein L13 OS=Cucurbita maxima OX=3661 GN=LOC111482837 PE=3 SV=1	[more]

BLAST of Lsi07G001410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653106.1	3.1e-107	97.57	60S ribosomal protein L13-3 [Cucumis sativus] >KGN53190.1 hypothetical protein C...	[more]
XP_008453835.1	5.3e-107	97.57	PREDICTED: 60S ribosomal protein L13-3 [Cucumis melo] >KAA0044694.1 60S ribosoma...	[more]
XP_022923040.1	5.9e-106	96.60	60S ribosomal protein L13-1 [Cucurbita moschata] >XP_022923041.1 60S ribosomal p...	[more]
XP_022984589.1	1.3e-105	96.12	60S ribosomal protein L13-1 [Cucurbita maxima] >XP_022984592.1 60S ribosomal pro...	[more]
XP_022990054.1	2.2e-105	95.63	60S ribosomal protein L13-1-like [Cucurbita maxima] >XP_022990133.1 60S ribosoma...	[more]

BLAST of Lsi07G001410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49010.1	9.1e-97	83.50	breast basic conserved 1	[more]
AT3G49010.2	9.1e-97	83.50	breast basic conserved 1	[more]
AT3G49010.3	9.1e-97	83.50	breast basic conserved 1	[more]
AT5G23900.1	9.1e-97	83.98	Ribosomal protein L13e family protein	[more]
AT3G49010.4	6.5e-95	83.01	breast basic conserved 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.110		coord: 166..206 e-value: 2.1E-14 score: 55.2
None	No IPR available	PANTHER	PTHR11722:SF11	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 6..184 e-value: 1.2E-77 score: 259.8
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR001380	Ribosomal protein L13e	HAMAP	MF_00499	Ribosomal_L13e	coord: 44..127 score: 21.508198
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 69..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G001410.1	Lsi07G001410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome