Lsi07G000270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G000270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionrho GDP-dissociation inhibitor 1-like
Locationchr07: 319371 .. 323406 (-)
RNA-Seq ExpressionLsi07G000270
SyntenyLsi07G000270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTGCTAAAAGCATCTACACTTTTTTGGTGCATTAAACTCTTTCCTTTCTTTCTTAGCTTCTTCCTCTATTTTACCATGTCGGCCGTGGTCGATTCTCTCTCGACCAACGACGTTAAGTTTAATCCTCAAATGGGAGAGGAAGAGCTCGAGAGGACGATGATGAACGATCGAGAAGAAGAAAAGATTATCGAAGAAGATGATCATCAAGAGAACAAACTTAAGCTAGAGAGAGATATGGATCTTGGTCCTCAATTCTCTCTTAAGGAACAACTCGAGAAAGATAAGGTGTGAATTTTCAAAGAGTAATACTTGACTATTAATTAGAGTGCAACAATTTTTTGTGGCTTAATCACGTACTCTAATCATACGGTGCCACGTGGTGAGCTGATTATTTTTTTTAGAAAAAAAATTGTAATTTTTTAGGCTGTTTTCAAATATAGAAAAATGAGTCAAATTATTTACATATATACAAAATTTTTACTGTATATCAGTGATAGAAGTCTATCGCTCAAGCGGTAGAATCCTATCGCAGTCTGTTGCTGATAGACAGTGAAATTTTTCTATATTTGTAAATATTTTGATATTTTTTCTGTTTATAATAATTTTCTTAATTTTTTTCTTTTTAATTAGGTTGAGCTAAAAAAAAAAAAAATAGTTGTAGCCTAGCTAACTGCCAAATATTTCTCATTTTTAAGAGTGAGTTTGATGTGAGGTTTAATAAAATTAAATGTAGTTTTAATTAATTAAAAATGCATATTTTATAAATTGATAGTTGTTTAGGTTATATATAGTCTAAATAAAACATAGTGAATATTTTTTTTCTTCTAAAAGGTAATAATATAAAAAGTGTTATTTCCAAAAGGCGTTCCCAAATTCAATGATCTAAGCATTTAATTTGATTTTCTTTCTGTAGGATGATGAAAGTTTGAGGAAATGGAAAGAACAGTTGCTGGGTAGTGTAGATCTCACAGCCATTGGAGGTGAAAATGAACATTAATTCTTCTTTGTGTTGATTATGTTTTTTTTTTTAAAAAAAAATTATTATTCTTATTGTTATTATGTTTTATTTTGTGACCTTTAGCTTTTAAGAATCTTAATTAAGCAACTTCTAATATAGGCAAATCTAACGGTTAAATTGCTTGATTTTTTATTTTTAAAAATTGTGTTGGTGTCAAATTGCTTGATCATGGTTTTCATATTTTCTATGAAAACATATAAATTCTTAGCCAAATTTAAAAAATAAAAATTCTTTTTTTAAATTTTTAAATTTTAATTTGGATTTTAAAAACTTTCTTTAAATTGACAACAAAACATATAAATTAATAGAATGGAAGTGATGTTTATATAGGCTTAATTTTCAAAAACCTAAAATAAAAACAAAATTGTTACAAAAAAGACTTAAACGATCTTTAATTTAGAATCTGTGCTTTATATACTTAGTATCGACTATAATTTATTTTTTAAAAAAAGTATGTATTAAATTTAGTAAGAGAGAAATAGAGAGGTTGAAGATTTACCTTCACACTATCTGAGAAAACACTACGTAATATTAATTTAAAAGTATGTTTGGGAGTGATTTTGAAATGGTTAAACTCAATTTTGTCATTTTAAAAATTACTCTAAAATATGTTTTTAATCATTTACACTCAACTTTGAGAAGAAAAATATTTAGGTTTTGCAAATGGTTAAAATCACTTTTGTCATTTTAAAAATTATTCTAAAATATGTTTTTAATCATTTATACTCAACTTTGAGAAGAAAAATATTTAGGTTTTGCCACCTATATGTCTATGCAGCCTAGACAACTGTCAAATAAAAAATTACCATGTTGCGGTTATTTATTTATTTATTTTTTTGTGTAAAGGAAGGTGAAAAACATGAGATTAAATTTAGTCTAGGTTGCACCTTAATCATTATTATTTTGATAATATAAAAGCTGCATTTATAAATCTAAAATTAAATATTAAAATAATTTTGAGTGATTGAAGACGTGTGATAAAAGTGATTAATGATAAAATAGAGTGATATATGTTTTATATATGGTGAAGCAGAAAGCAAAGAAGCAGAAGTGAAAATCAAGAGCCTAACAATCCAATGTCCAGGGCGGGAAGATCTTATGCTGCCATTGCCATTTACCAAAACTTCCAAGAGTAGCAGCCTCTTCGCCTTAAAGGAAGGCTCCCGGTACCGACTCCGTTTCAGTTTCGTCGTTGCCGGGAATATTGTCTCCGGTCTCAAGTACACAAACTCGGTTTGGAAGACGGGGGTTAAAGGTGAGTTCAAGATTCTCAAATGGTTAAAATCATTTTTTCTTTATTTTTAAACATTCTAAAACACATTTTTAATTGTTTAAAATCAATTTTAATGATATGAAAATTGCAAAAATAAATATTAAATTAATTTTAAGTAATTAAAGGAGTAGTTTTGAATACGAGAAAAAATGATTTTAACAATTTTAAAAAATCACTCCCAAACATACATTTGAAATAGAATTTTTTTAGTTTTGGTAATTTGATTTGGGTTGGATTATGATTGTTTTGGCAGTGGATCATACTAAGAAAATGCTTGGAACTTTCAGTCCTCAAAAGGAGCCTTATGTGTATGAAATGGAAGAAGAAACTACGCCCTCTGGAATCTTTGCAAGAGGCTCCTATTCTGCAAGGACTAAGGTCAAAACCATTACCAATTTTGCTCGATAATTATTTGATTTTTTTTTAATTTTAAATATTTTTAAATATAACAAAATCACCCAACTTATTTATAAATATAAAAAAATATTACTATCTATCAGACATTGATAGACATATGTCTAATAGATGTCGATCAGTATCTATTACTAATAAATAGTGACATTTTGCTATATTTAAAAATATTTTCAGCAGTTTTGTCATTTAAAACAATTACCCATTATGTTGGGTTTCTCACAAATTCTTAATCATGATTTTCATCTTTTGTTTGAATAAATATTTGAATTTTTAGCCAAATTTCAAAAATTAATTTTTAAAACAAGGGTTTGATTTTAAAAATACTTTATATACAACCAAACCAATAAACCATTGGACGGAGTTAATATTTAAAAGCTTAATTCTTACAAATAAAAAGCTAAAATATCGATTGGTTATCAAACATTAGTGTCATTCATTTTTTTGTTTTCAATATTTAAAAAATTAAAGTCTATAAAAATACGTAGATCTATATTTTCGTTACTATTTAAAAAAACTCTTGAAATTCCAGTCAAATAATTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAGATAATTAAAGTTTACTTGATTGTTCTTTTTTTGTTACACAGTTTGTGGATGATGATGGGAAGTGCTATTTGGATGTGAGTTACCACTTTGAAATCCAAAAGAACTGGCCAACACCCTCTTCATGAGTACTGTTCTTCAACAAAAAATTCCCTCTTCCTATTGGAGATATAGCTTTGGCTTTTATTATTATTATTGTGTTCTTTTTCTAATAGCTTTTGCTCTATAATCCAAATGGAATTATGTATCACTTGTTCATTCCATATATATATACTTTTACCATGTTCTAGTAAATAATTATCATTTGTTACTTC

mRNA sequence

ATCTGCTAAAAGCATCTACACTTTTTTGGTGCATTAAACTCTTTCCTTTCTTTCTTAGCTTCTTCCTCTATTTTACCATGTCGGCCGTGGTCGATTCTCTCTCGACCAACGACGTTAAGTTTAATCCTCAAATGGGAGAGGAAGAGCTCGAGAGGACGATGATGAACGATCGAGAAGAAGAAAAGATTATCGAAGAAGATGATCATCAAGAGAACAAACTTAAGCTAGAGAGAGATATGGATCTTGGTCCTCAATTCTCTCTTAAGGAACAACTCGAGAAAGATAAGGATGATGAAAGTTTGAGGAAATGGAAAGAACAGTTGCTGGGTAGTGTAGATCTCACAGCCATTGGAGGGCGGGAAGATCTTATGCTGCCATTGCCATTTACCAAAACTTCCAAGAGTAGCAGCCTCTTCGCCTTAAAGGAAGGCTCCCGTCCTCAAAAGGAGCCTTATGTGTATGAAATGGAAGAAGAAACTACGCCCTCTGGAATCTTTGCAAGAGGCTCCTATTCTGCAAGGACTAAGTTTGTGGATGATGATGGGAAGTGCTATTTGGATGTGAGTTACCACTTTGAAATCCAAAAGAACTGGCCAACACCCTCTTCATGAGTACTGTTCTTCAACAAAAAATTCCCTCTTCCTATTGGAGATATAGCTTTGGCTTTTATTATTATTATTGTGTTCTTTTTCTAATAGCTTTTGCTCTATAATCCAAATGGAATTATGTATCACTTGTTCATTCCATATATATATACTTTTACCATGTTCTAGTAAATAATTATCATTTGTTACTTC

Coding sequence (CDS)

ATGTCGGCCGTGGTCGATTCTCTCTCGACCAACGACGTTAAGTTTAATCCTCAAATGGGAGAGGAAGAGCTCGAGAGGACGATGATGAACGATCGAGAAGAAGAAAAGATTATCGAAGAAGATGATCATCAAGAGAACAAACTTAAGCTAGAGAGAGATATGGATCTTGGTCCTCAATTCTCTCTTAAGGAACAACTCGAGAAAGATAAGGATGATGAAAGTTTGAGGAAATGGAAAGAACAGTTGCTGGGTAGTGTAGATCTCACAGCCATTGGAGGGCGGGAAGATCTTATGCTGCCATTGCCATTTACCAAAACTTCCAAGAGTAGCAGCCTCTTCGCCTTAAAGGAAGGCTCCCGTCCTCAAAAGGAGCCTTATGTGTATGAAATGGAAGAAGAAACTACGCCCTCTGGAATCTTTGCAAGAGGCTCCTATTCTGCAAGGACTAAGTTTGTGGATGATGATGGGAAGTGCTATTTGGATGTGAGTTACCACTTTGAAATCCAAAAGAACTGGCCAACACCCTCTTCATGA

Protein sequence

MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIGGREDLMLPLPFTKTSKSSSLFALKEGSRPQKEPYVYEMEEETTPSGIFARGSYSARTKFVDDDGKCYLDVSYHFEIQKNWPTPSS
Homology
[Close]
BLAST of Lsi07G000270 vs. ExPASy Swiss-Prot
Match: Q9SFC6 (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-32
Identity = 85/193 (44.04%), Postives = 106/193 (54.92%), Query Frame = 0 

Query: 39  EEDDHQENKLKLERDMDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG------ 98
           EE++  ++KL+      LGPQ+++KE LEKDKDDESLRKWKEQLLGSVD+T IG      
Sbjct: 53  EEEEDDDSKLQ------LGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPE 112

Query: 99  -----------GREDLMLPLPFTKTSKSSSLFALKEGSR--------------------- 158
                      GR D++L +P     K    F LKEGS+                     
Sbjct: 113 VRIDSLAIISPGRPDIVLLVPENGNPK-GMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTN 172

Query: 159 --------------------PQKEPYVYEMEEETTPSGIFARGSYSARTKFVDDDGKCYL 174
                               PQ EPY + M EETTPSG+FARGSYSARTKF+DDD KCYL
Sbjct: 173 TVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYL 232

[Close]
BLAST of Lsi07G000270 vs. ExPASy Swiss-Prot
Match: P52565 (Rho GDP-dissociation inhibitor 1 OS=Homo sapiens OX=9606 GN=ARHGDIA PE=1 SV=3)

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-07
Identity = 54/191 (28.27%), Postives = 75/191 (39.27%), Query Frame = 0 

Query: 39  EEDDHQENKLKLERDMDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIGGREDLM 98
           EED+H  N            Q S++E  E DKDDESLRK+KE LLG V ++A     +++
Sbjct: 19  EEDEHSVN-------YKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVV 78

Query: 99  L------------PLPFTKTSKSSSL----FALKEGSR---------------------- 158
           +            PL    T    S     F LKEG                        
Sbjct: 79  VTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQH 138

Query: 159 -------------------PQKEPYVYEMEEETTPSGIFARGSYSARTKFVDDDGKCYLD 173
                              P+ E Y +    E  P G+ ARGSYS +++F DDD   +L 
Sbjct: 139 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLS 198

[Close]
BLAST of Lsi07G000270 vs. ExPASy Swiss-Prot
Match: Q4R4J0 (Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis OX=9541 GN=ARHGDIA PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-07
Identity = 54/191 (28.27%), Postives = 75/191 (39.27%), Query Frame = 0 

Query: 39  EEDDHQENKLKLERDMDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIGGREDLM 98
           EED+H  N            Q S++E  E DKDDESLRK+KE LLG V ++A     +++
Sbjct: 19  EEDEHSVN-------YKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVV 78

Query: 99  L------------PLPFTKTSKSSSL----FALKEGSR---------------------- 158
           +            PL    T    S     F LKEG                        
Sbjct: 79  VTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQH 138

Query: 159 -------------------PQKEPYVYEMEEETTPSGIFARGSYSARTKFVDDDGKCYLD 173
                              P+ E Y +    E  P G+ ARGSYS +++F DDD   +L 
Sbjct: 139 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLS 198

[Close]
BLAST of Lsi07G000270 vs. ExPASy Swiss-Prot
Match: P19803 (Rho GDP-dissociation inhibitor 1 OS=Bos taurus OX=9913 GN=ARHGDIA PE=1 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-07
Identity = 53/191 (27.75%), Postives = 74/191 (38.74%), Query Frame = 0 

Query: 39  EEDDHQENKLKLERDMDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIGGREDLM 98
           EED+H  N            Q S++E  E DKDDESLRK+KE LLG V ++A     +++
Sbjct: 19  EEDEHSVN-------YKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVV 78

Query: 99  L------------PLPFTKTSKSSSL----FALKEGSR---------------------- 158
           +            PL    T    S     F LKEG                        
Sbjct: 79  VTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQH 138

Query: 159 -------------------PQKEPYVYEMEEETTPSGIFARGSYSARTKFVDDDGKCYLD 173
                              P+ E Y +    E  P G+ ARGSY+ +++F DDD   +L 
Sbjct: 139 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLS 198

[Close]
BLAST of Lsi07G000270 vs. ExPASy Swiss-Prot
Match: Q99PT1 (Rho GDP-dissociation inhibitor 1 OS=Mus musculus OX=10090 GN=Arhgdia PE=1 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-07
Identity = 53/191 (27.75%), Postives = 74/191 (38.74%), Query Frame = 0 

Query: 39  EEDDHQENKLKLERDMDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIGGREDLM 98
           EED+H  N            Q S++E  E DKDDESLRK+KE LLG V ++A     +++
Sbjct: 19  EEDEHSVN-------YKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVI 78

Query: 99  L------------PLPFTKTSKSSSL----FALKEGSR---------------------- 158
           +            PL    T    S     F LKEG                        
Sbjct: 79  VTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQH 138

Query: 159 -------------------PQKEPYVYEMEEETTPSGIFARGSYSARTKFVDDDGKCYLD 173
                              P+ E Y +    E  P G+ ARGSY+ +++F DDD   +L 
Sbjct: 139 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLS 198

[Close]
BLAST of Lsi07G000270 vs. ExPASy TrEMBL
Match: A0A6J1CUH4 (rho GDP-dissociation inhibitor 1-like OS=Momordica charantia OX=3673 GN=LOC111014694 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.6e-63
Identity = 147/235 (62.55%), Postives = 161/235 (68.51%), Query Frame = 0 

Query: 1   MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQF 60
           MSA+V SLST DVKFNP+  +EE++RTM     EE+I+EED  +++KLK ER+MDLGPQF
Sbjct: 1   MSAMVGSLSTKDVKFNPR--DEEIDRTMNEREGEEEIVEED--EDDKLKPEREMDLGPQF 60

Query: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPLPF 120
           SLKEQLEKDKDDESLRKWKEQLLGSVDL+AIG                 GR DL+LPLPF
Sbjct: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKVLRLTIKCAGRPDLVLPLPF 120

Query: 121 TKTSKSSSLFALKEGSR-----------------------------------------PQ 178
           TKTSKSSSLFALKEGSR                                         PQ
Sbjct: 121 TKTSKSSSLFALKEGSRYRLRFSFTVTENIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQ 180

[Close]
BLAST of Lsi07G000270 vs. ExPASy TrEMBL
Match: A0A6J1EXP3 (rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439153 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.4e-63
Identity = 144/234 (61.54%), Postives = 164/234 (70.09%), Query Frame = 0 

Query: 1   MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQF 60
           MSAVV SLST +VKFNPQ+GEEEL ++ MNDRE E+IIE+D  +++KLK E ++DLGP+F
Sbjct: 1   MSAVVGSLSTKNVKFNPQVGEEELSKS-MNDREGEEIIEDD--EDDKLKPEGEVDLGPRF 60

Query: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPLPF 120
           S+KEQLEKDKDDESLRKWKEQLLGSVDL+AIG                 GR DL+LPLPF
Sbjct: 61  SIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCQGRADLVLPLPF 120

Query: 121 TKTSKSSSLFALKEGSR-----------------------------------------PQ 177
           TKTSKS+SLFA+KEGSR                                         PQ
Sbjct: 121 TKTSKSNSLFAIKEGSRYRLRFSFIVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQ 180

[Close]
BLAST of Lsi07G000270 vs. ExPASy TrEMBL
Match: A0A1S3BYU4 (rho GDP-dissociation inhibitor 1-like OS=Cucumis melo OX=3656 GN=LOC103494555 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.4e-63
Identity = 151/238 (63.45%), Postives = 160/238 (67.23%), Query Frame = 0 

Query: 1   MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQF 60
           MS  V SLST DVKFNPQ+ EEEL R  M DREEEKI EE++ +ENKLK ER+MDLGP F
Sbjct: 1   MSTAVGSLSTKDVKFNPQVREEELGRMTMIDREEEKITEEEE-EENKLKGEREMDLGPLF 60

Query: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPLPF 120
           SLKEQLEKDKDDESLRKWKEQLLGSVDL+AIG                 GR+DL+LPLPF
Sbjct: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKILSLTIQCPGRQDLVLPLPF 120

Query: 121 TKT-SKSSS--LFALKEGSR---------------------------------------- 178
           TKT SKSSS  LF LKEGSR                                        
Sbjct: 121 TKTASKSSSRCLFTLKEGSRYRLLFSFVVAGNIVSGLKYTNTVWKTGVRVDHSKKMLGTF 180

[Close]
BLAST of Lsi07G000270 vs. ExPASy TrEMBL
Match: A0A6J1IA85 (rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470676 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.5e-63
Identity = 145/234 (61.97%), Postives = 163/234 (69.66%), Query Frame = 0 

Query: 1   MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQF 60
           MSAVV SLST +VKFNPQ+GEEEL ++ MNDRE E+IIEED  +++KLK E ++DLGP+F
Sbjct: 1   MSAVVGSLSTKNVKFNPQVGEEELGKS-MNDREGEEIIEED--EDDKLKPEGEVDLGPRF 60

Query: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPLPF 120
           S+KEQLEKDKDD SLRKWKEQLLGSVDL+AIG                 GR DL+LPLPF
Sbjct: 61  SIKEQLEKDKDDVSLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCPGRADLVLPLPF 120

Query: 121 TKTSKSSSLFALKEGSR-----------------------------------------PQ 177
           TKTSKS+SLFA+KEGSR                                         PQ
Sbjct: 121 TKTSKSNSLFAIKEGSRYRLRFSFIVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQ 180

[Close]
BLAST of Lsi07G000270 vs. ExPASy TrEMBL
Match: A0A0A0KU57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012490 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61
Identity = 152/238 (63.87%), Postives = 162/238 (68.07%), Query Frame = 0 

Query: 1   MSAVVDSLSTND-VKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERD-MDLGP 60
           MS VV SLST D VKFNPQ+ EE+L  T + DREEEKIIEED  +ENKLK ER+ MDLGP
Sbjct: 1   MSTVVGSLSTKDNVKFNPQVREEKL-GTTIKDREEEKIIEED--EENKLKGEREIMDLGP 60

Query: 61  QFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPL 120
            FSLKEQLEKDKDDESLRKWKEQLLGSVDL+AIG                 GR+DL+LPL
Sbjct: 61  LFSLKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKILSLTIQCPGRQDLVLPL 120

Query: 121 PFTKTSKSSS-LFALKEGSR---------------------------------------- 178
           PFTKTSK+SS LFALKEGSR                                        
Sbjct: 121 PFTKTSKTSSCLFALKEGSRYRLLFSFVVAGNIVSGLKYTNTVWKTGVRVDYSKKMLGTF 180

[Close]
BLAST of Lsi07G000270 vs. NCBI nr
Match: XP_038877932.1 (rho GDP-dissociation inhibitor 1-like [Benincasa hispida])

HSP 1 Score: 270.8 bits (691), Expect = 8.4e-69
Identity = 156/234 (66.67%), Postives = 166/234 (70.94%), Query Frame = 0 

Query: 1   MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQF 60
           MSAVVDSLST DVKFNPQ+GEEEL RT MN+REEE+IIEED  +ENKLKL+R MDLGPQF
Sbjct: 1   MSAVVDSLSTKDVKFNPQIGEEELGRT-MNNREEEEIIEED--EENKLKLDRGMDLGPQF 60

Query: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPLPF 120
           SLKEQLEKDKDDESLRKWKEQLLG VDL+AIG                 GREDL+LPLPF
Sbjct: 61  SLKEQLEKDKDDESLRKWKEQLLGCVDLSAIGESKEAEVKILSLTIQCPGREDLVLPLPF 120

Query: 121 TKTSKSSSLFALKEGSR-----------------------------------------PQ 177
           TKTSK+SSLF LKEGSR                                         PQ
Sbjct: 121 TKTSKNSSLFTLKEGSRYRLRFSFVVAGNIVSGLKYTNTIWKSGVRVDYTKKMLGTFSPQ 180

[Close]
BLAST of Lsi07G000270 vs. NCBI nr
Match: XP_023538815.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.5 bits (641), Expect = 5.3e-63
Identity = 145/234 (61.97%), Postives = 164/234 (70.09%), Query Frame = 0 

Query: 1   MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQF 60
           MSAVV SLST +VKFNPQ+GEEEL ++ MNDRE E+IIEED  +++KLK E ++DLGP+F
Sbjct: 1   MSAVVGSLSTKNVKFNPQVGEEELGKS-MNDREGEEIIEED--EDDKLKPEGEVDLGPRF 60

Query: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPLPF 120
           S+KEQLEKDKDDESLRKWKEQLLGSVDL+AIG                 GR DL+LPLPF
Sbjct: 61  SIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCPGRADLVLPLPF 120

Query: 121 TKTSKSSSLFALKEGSR-----------------------------------------PQ 177
           TKTSKS+SLFA+KEGSR                                         PQ
Sbjct: 121 TKTSKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQ 180

[Close]
BLAST of Lsi07G000270 vs. NCBI nr
Match: XP_022145189.1 (rho GDP-dissociation inhibitor 1-like [Momordica charantia])

HSP 1 Score: 251.5 bits (641), Expect = 5.3e-63
Identity = 147/235 (62.55%), Postives = 161/235 (68.51%), Query Frame = 0 

Query: 1   MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQF 60
           MSA+V SLST DVKFNP+  +EE++RTM     EE+I+EED  +++KLK ER+MDLGPQF
Sbjct: 1   MSAMVGSLSTKDVKFNPR--DEEIDRTMNEREGEEEIVEED--EDDKLKPEREMDLGPQF 60

Query: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPLPF 120
           SLKEQLEKDKDDESLRKWKEQLLGSVDL+AIG                 GR DL+LPLPF
Sbjct: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKVLRLTIKCAGRPDLVLPLPF 120

Query: 121 TKTSKSSSLFALKEGSR-----------------------------------------PQ 178
           TKTSKSSSLFALKEGSR                                         PQ
Sbjct: 121 TKTSKSSSLFALKEGSRYRLRFSFTVTENIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQ 180

[Close]
BLAST of Lsi07G000270 vs. NCBI nr
Match: XP_022932679.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 251.1 bits (640), Expect = 6.9e-63
Identity = 144/234 (61.54%), Postives = 164/234 (70.09%), Query Frame = 0 

Query: 1   MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQF 60
           MSAVV SLST +VKFNPQ+GEEEL ++ MNDRE E+IIE+D  +++KLK E ++DLGP+F
Sbjct: 1   MSAVVGSLSTKNVKFNPQVGEEELSKS-MNDREGEEIIEDD--EDDKLKPEGEVDLGPRF 60

Query: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPLPF 120
           S+KEQLEKDKDDESLRKWKEQLLGSVDL+AIG                 GR DL+LPLPF
Sbjct: 61  SIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCQGRADLVLPLPF 120

Query: 121 TKTSKSSSLFALKEGSR-----------------------------------------PQ 177
           TKTSKS+SLFA+KEGSR                                         PQ
Sbjct: 121 TKTSKSNSLFAIKEGSRYRLRFSFIVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQ 180

[Close]
BLAST of Lsi07G000270 vs. NCBI nr
Match: XP_008454005.1 (PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 9.0e-63
Identity = 151/238 (63.45%), Postives = 160/238 (67.23%), Query Frame = 0 

Query: 1   MSAVVDSLSTNDVKFNPQMGEEELERTMMNDREEEKIIEEDDHQENKLKLERDMDLGPQF 60
           MS  V SLST DVKFNPQ+ EEEL R  M DREEEKI EE++ +ENKLK ER+MDLGP F
Sbjct: 1   MSTAVGSLSTKDVKFNPQVREEELGRMTMIDREEEKITEEEE-EENKLKGEREMDLGPLF 60

Query: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG-----------------GREDLMLPLPF 120
           SLKEQLEKDKDDESLRKWKEQLLGSVDL+AIG                 GR+DL+LPLPF
Sbjct: 61  SLKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKILSLTIQCPGRQDLVLPLPF 120

Query: 121 TKT-SKSSS--LFALKEGSR---------------------------------------- 178
           TKT SKSSS  LF LKEGSR                                        
Sbjct: 121 TKTASKSSSRCLFTLKEGSRYRLLFSFVVAGNIVSGLKYTNTVWKTGVRVDHSKKMLGTF 180

[Close]
BLAST of Lsi07G000270 vs. TAIR 10
Match: AT3G07880.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-33
Identity = 85/193 (44.04%), Postives = 106/193 (54.92%), Query Frame = 0 

Query: 39  EEDDHQENKLKLERDMDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG------ 98
           EE++  ++KL+      LGPQ+++KE LEKDKDDESLRKWKEQLLGSVD+T IG      
Sbjct: 53  EEEEDDDSKLQ------LGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPE 112

Query: 99  -----------GREDLMLPLPFTKTSKSSSLFALKEGSR--------------------- 158
                      GR D++L +P     K    F LKEGS+                     
Sbjct: 113 VRIDSLAIISPGRPDIVLLVPENGNPK-GMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTN 172

Query: 159 --------------------PQKEPYVYEMEEETTPSGIFARGSYSARTKFVDDDGKCYL 174
                               PQ EPY + M EETTPSG+FARGSYSARTKF+DDD KCYL
Sbjct: 173 TVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYL 232

[Close]
BLAST of Lsi07G000270 vs. TAIR 10
Match: AT1G12070.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-30
Identity = 80/192 (41.67%), Postives = 99/192 (51.56%), Query Frame = 0 

Query: 40  EDDHQENKLKLERDMDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG------- 99
           +DD +E   KLE    LGP  +LKEQLEKDKDDESLR+WKEQLLGSVDL  +G       
Sbjct: 35  DDDEEEEDKKLE----LGPMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLV 94

Query: 100 ----------GREDLMLPLPFT-KTSKSSSLFALKEGSR--------------------- 159
                      RED++L +P   K +     F LKEGS+                     
Sbjct: 95  KILTLTIRSPDREDMVLTIPENGKPASKGPWFTLKEGSKYTLIFTFRVTNNIVSGLQYSN 154

Query: 160 --------------------PQKEPYVYEMEEETTPSGIFARGSYSARTKFVDDDGKCYL 173
                               PQ EPY + M EET PSG+  RGSYS ++KFVDDD +CYL
Sbjct: 155 TVWKTGIKVYSRKEMLGTFSPQAEPYTHVMFEETAPSGLLVRGSYSVKSKFVDDDNQCYL 214

[Close]
BLAST of Lsi07G000270 vs. TAIR 10
Match: AT1G62450.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-29
Identity = 78/192 (40.62%), Postives = 100/192 (52.08%), Query Frame = 0 

Query: 40  EDDHQENKLKLERDMDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLTAIG------- 99
           EDD ++   KLE    LGP  +LKEQLE+DKDDESLR+WKEQLLG VDL  +G       
Sbjct: 35  EDDEEDEDKKLE----LGPMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVV 94

Query: 100 ----------GREDLMLPLPFT-KTSKSSSLFALKEGSR--------------------- 159
                      RE+++L +P     +     F +KEGS+                     
Sbjct: 95  KILDLTIRSPDREEMVLTIPEDGLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNN 154

Query: 160 --------------------PQKEPYVYEMEEETTPSGIFARGSYSARTKFVDDDGKCYL 173
                               PQ E Y + M EE TPSG+FARGSYSARTKF+DDD KCYL
Sbjct: 155 TVWKTGVKVDSTKAMLGTFSPQAESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCYL 214

The following BLAST results are available for this feature:
BLAST of Lsi07G000270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SFC63.8e-3244.04Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV... [more]
P525653.3e-0728.27Rho GDP-dissociation inhibitor 1 OS=Homo sapiens OX=9606 GN=ARHGDIA PE=1 SV=3[more]
Q4R4J03.3e-0728.27Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis OX=9541 GN=ARHGDIA PE=2 ... [more]
P198039.5e-0727.75Rho GDP-dissociation inhibitor 1 OS=Bos taurus OX=9913 GN=ARHGDIA PE=1 SV=3[more]
Q99PT19.5e-0727.75Rho GDP-dissociation inhibitor 1 OS=Mus musculus OX=10090 GN=Arhgdia PE=1 SV=3[more]
BLAST of Lsi07G000270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CUH42.6e-6362.55rho GDP-dissociation inhibitor 1-like OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A6J1EXP33.4e-6361.54rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucurbita moschata OX=3662 G... [more]
A0A1S3BYU44.4e-6363.45rho GDP-dissociation inhibitor 1-like OS=Cucumis melo OX=3656 GN=LOC103494555 PE... [more]
A0A6J1IA857.5e-6361.97rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A0A0KU571.8e-6163.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012490 PE=3 SV=1[more]
BLAST of Lsi07G000270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877932.18.4e-6966.67rho GDP-dissociation inhibitor 1-like [Benincasa hispida][more]
XP_023538815.15.3e-6361.97rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022145189.15.3e-6362.55rho GDP-dissociation inhibitor 1-like [Momordica charantia][more]
XP_022932679.16.9e-6361.54rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita moschata][more]
XP_008454005.19.0e-6363.45PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis melo][more]
BLAST of Lsi07G000270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G07880.12.7e-3344.04Immunoglobulin E-set superfamily protein [more]
AT1G12070.12.8e-3041.67Immunoglobulin E-set superfamily protein [more]
AT1G62450.14.1e-2940.63Immunoglobulin E-set superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 21..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availablePANTHERPTHR10980:SF36OS01G0913600 PROTEINcoord: 22..120
coord: 121..174
IPR024792Rho GDP-dissociation inhibitor domain superfamilyGENE3D2.70.50.30Coagulation Factor XIII, subunit A, domain 1coord: 119..174
e-value: 2.9E-19
score: 71.5
IPR024792Rho GDP-dissociation inhibitor domain superfamilyGENE3D2.70.50.30Coagulation Factor XIII, subunit A, domain 1coord: 54..118
e-value: 4.1E-9
score: 38.5
IPR000406Rho protein GDP-dissociation inhibitorPFAMPF02115Rho_GDIcoord: 40..91
e-value: 2.0E-13
score: 50.5
coord: 121..171
e-value: 2.3E-22
score: 79.7
IPR000406Rho protein GDP-dissociation inhibitorPANTHERPTHR10980RHO GDP-DISSOCIATION INHIBITORcoord: 22..120
IPR000406Rho protein GDP-dissociation inhibitorPANTHERPTHR10980RHO GDP-DISSOCIATION INHIBITORcoord: 121..174
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 42..173

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G000270.1Lsi07G000270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0065007 biological regulation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005094 Rho GDP-dissociation inhibitor activity