Lsi06G016440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G016440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nuclear transcription factor Y subunit C
Location	chr06: 26741318 .. 26749889 (-)
RNA-Seq Expression	Lsi06G016440
Synteny	Lsi06G016440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGATGTCATCTACTATGAAATTCTCACAACCTTGTAAGTGTAGCAATACACAATAATATATAAAATTGAGAGAAAAACCAATAACATATACCATTTATTCACATAACATAATATTTATTTACTCATTATAAACCAAAGTTTTATTTTGACTTTCATGCTTTTATTATTAAAAAAACACACTCAATACAAAAATCAATTTTTACTTAAATTAGAGATATCGCCCTTAGCTATTCATGACATGACACTTACTAACAAAAATAACAATAAATAGCATAAATAGTAATAAAATATTTTTTTATACCATCATAATATTCAACAAATTCCCATGAGACCTAATTTTTTACTGTTTCTTGATATGACAAATAATAAGATACACACATATTTGACTAGCCTATCCAAATTATATAAAATGAAAGTCCTAAAATTTGAAATATTCAAATAATTTATATGAGTTATTTATGCCTAAAAAGGATAATTTAAGATTTTTGTTTGTCTTTTTATTCAAAACCCTTGACGATTTACTTTGAAACTCAACCCATTTTCAATGGAAAAAGGACAAAATCATACTTTCGGCTATAAATATAGACTGCAAAATAATAATAAAAAAAAAAATTATTACCAAATATTGAAATTTGAATCCTGGTTGGGTTTGGTTCTATTTTTAACCGGCAGAAAATTTAGGGTTAATTAAATGAGTGATATAGTTTTTTTTTGTTTTCCCCCCATATTTTAATTTTAATTTTAATATTAAAAAAAAAAAACAAGAAGAGGAAATCTTTAAAATGCAGAGATAGAGGCAGAGAAACGAATCGTGAAGGCTGTTACCTTATCTCAACTCTTTTCCGAGTTGTGTGAGTCTCACCCTTTTTTCTTCTTCTTCACCACTTCAAAAATTTCTTCACATTCCCCAAATCACTTCTTCAAATCTGCTAATCACTCCATCAAATCTCCTTCTCCAGCATTTGGCTAACCCCTACTACAACCGCCGCCGTCGCCGGCCGATGGACACCAACAATCAAGCCCAATCCTCTCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCTTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGACTTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTTGCACGCATTAAGAAGATCATGAAAGCCGATGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCCACTGCTAGCGGAGTTCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGGGGTATGATGATTGGGAGACCGGCAATGGATCCCACCGGGGTTTATGCTCAGCCGCCGTCCCAGGCGTGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGAGGCAGCAGCGGGCAGGGTAACCTTGATGGTCAGAGGTAGGTGTTTCATGGCTGTTTGTGTGATTTGAATTAGTAATGCACAATTAAAGATTTATCTTGTATTCTATCCGGATTGGTGCCGTGATCAGGCTGAATTGAATTCTTACCTTATCATGTTTTACCTGATTTCATATTTACGTCTTCTTTATCGGGAGATTGCATGTTGTTGTTGTTGCATTTTTCTTTTTCTTGACTGCGTAAACCCCCAGCTAGAATGTGCTGATTTGTTGAGTAATTTTCAGGATTTTGTAGGGTTTTGTTTGGAGCCGTTTTGGTTTAAAGCTTCATCTTTGGTTTTTGCTGTCTAATACTTTTTTTGTTAAATTTTCTCCATTTTTGACGAGTCCCAACCTAAGAGGACTTCTTTTAATTAAAAATCTAAAAATGAGTCATCTTATTCTTCTTTGGCCTTTGCTTGACAGGATTTCTTATTTTCCTCCCTCTCCCTCTCTTGTTTCTTTTGAGTTCCGATATATGAATTGCCCAGTAAGTATTAATATCAGTAGTTTTCCTTTTTATTATTACCAACTGGAGGAATTTTTGTCATCCTCTTGGCTTGGTCAATATCTTATCCCTCATCCTTCTTTCTATCTCTTATTGAAACAAAACTCACCAATCAGTAGTAACAGCAATAGTTGAGGATGAAGCTTTCAACCTGTTTATTTTAGAAAGTTGTAATATAAAACAATGTAAAAGGACATGCAGAAAACAACCCAGTGAAAGGAGCTTTCAACCTGTTTATTTTAGACTATCAAGATCTGTCTTCACTTTTAGAGGGACATCAAGTGTTTGCCTGATCTTCCCATTGATCTAAATACGTTATTCTTGAGACTTGATGATGTCTTAATTATAGTAAATTCTTATGTAATTATACCCTTTCCATGATCATTAACAATTTGAAAGTCTTCTTTTATTCTCTTTGGGTGAGGATCCGCGTTCTCCAGACACTTAGGTTGTTTATTTCCCTTTGCTTAATATGCGTCCTAGTTTCTCTTAAAAAAAAGCTTTTCTTTTTCTTTCAGAAAAGAGTGGATATGACATTTTTTTTCTTCTAATTAGCTTGAGTGCCAACAAGGAACCCGTCATTCAAATGAAGGGATGCATCAGGTCCTAAAAGGATTATCTTTCTTTTTCTTTCGATTTCTTCCCCTTTGACGCAGTGCATCTTGAATGAATCTTAGAATGAACAATTCATGTCGTCCATATATTGTTACTCACAAAATTGAGACAGAATTTTTTTCCACTGCTTTTGAGAACTTTGAGGTCTAAAGCTTGTGTTGGTCACTTTTCTAGTAGATTGGTTAAAGGATTGTTCAATGATTTTGTGCTCCCTCCTAACCAAAATTCCTAATAATAATAAAGCCAATTAGGAATGAGGATGGCTGTTTGTGGATTGAGGAGGTGTTGAATAAAAGAGGATGGTATGTTGAAGTCTCCAAGGTGTGGACTGTGTGGAGTGCTAGGAGAAAAATTCACCTTATTGTTCTGGTAGTGGTAGGGAGGAGCTAATTTGTTGGAAATCATTCATTGACCTTGTGTGGTAGTTCCTATAAATGGGGAGTCTAAAGGAAATGGAGAATAATATATTCATATTGACAAAAGGAATAAGATAAGGGCGAGGAGTAGAGAGAACCCCTCCCCAAAAGGGAGAACTATTACCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAGAAAAAGAAGAAGAAGAAAAGAAAAAAAGGCCTTCCAATTTCTAATAATCAAGGCAAGGCTATAAAAACACCCAAAATCTTTGTGACTTGAGCTCCACCAAGAGGCCAAGTGTTGTATGCTATAAACAAAAGAGTCTCCGTAGCTATGATCATTCTAAAAAATCTGACAATTTCTTTCTTTCGAAGGTGACCACATCGTAGCCTTAACCACACAATCCCACTAGATCTTAGCCTTCCCCCTGAAGCAAGTTCCGGAAAGAGCCTATAAGAGCCAATCCTCAATCTTCTTAGGAGGCAAATGGATTCTTCCCCTTTGAGCACAGGCAGCAGCATGATGGAGACAAAGTCCAGGAGGGGAACTTCCTTAGCAGCATTCAACGCTCTACAAAAAAGCAGTCCACAGAAAAAGTCCATTGACTGATTTAGAGGTGGGGGCCTTTCAAATAAGCTTCAGCCAACTATTATTTGATTGATTAGACACTGGACAAAAAAGCAGACTTAGACGAGAAGGAAAGCTGAAAGTTGAGTTAGTGCCAAAAAACTAAGACTGTTTGTTGAGATGGTGAAATTTGATTGGTGTCTGCTCAACTATCAATCCACTTTGGTCAAGTTTTATAGGAATTCCAAGCTTCAATTCTTGGAACCAAACTCAAGTTGTGCCAAGAACTTGCTTCCATGTCATGGTTTGAGTCGAAGTATGCAGATCCTAGTTAGAGGATGCAGATTTGACCTTCTCTAGTTAGATGCTTTTGATGTGTAGAATTGTTGACTTCCATGGAAAATTCTCCATACAAGCGGCAGTTAGGTTCCAGAGAAAGGGAATATACCTTTGTATAGCTATATGAGAAGTTACTGGCAATGTTTTAAAAGCCTAACGGCAGCCTTGAGGTTTTTCTTCTTGAAGAGGCGACGTAAGCTTTGAGGCGGTATGAGGTGTAAGCTTCAAATTTAGCTAATAACATTTAATAAATCCTAAGTAAGTATGACCAAGTATTGCTAACTACTCGGGTCAATTGTTACTTAAACAAAAATTTTAAAAGGGATATCTTTAACCTCACTACTATTATCGTTTAAAGGATTAACTAATACTATAAATCTTTATTTTCAATACTTTTAAAGTTACAATAGCAAAAATAATAATAGTTCATATTGTCACAACTCAAGCTTTTATATTTTTTAAGAATGAGACAAATTAATATTATTACACAAAGCATAGAGACTACAAGCTTCAGTGCCTTTTCACAAAGGCGAATAAGCAAGGAGGCTTAAGTCAAGGCGTATGCCTTAACAGCCTCTTAAAACACTGGTTACTGGTGTAGATACAAAGAACTCTTTTGGGATCCCCCTTGCCTTTGAAAGAAAACCTTCTAACTCTCTCTATCCAAACCGAGAAACAAGAAGACCAACTCATTTCCTTATCAAAGTAACTCATGAAGCCTATTTTAATCAGAATTCTCAACAACAAATCGGTAAGAAACTCAAAACTAAGAAATAAACCCAATAAAAAAGAAAATAATTCTGAAAATTTCGAAATGCAAGACAAAGGAGCTTTTCACGATAACCAAAAGATGTTTGAAAGTCAAAGAGAAGGTTCTCTTATAACATGTTCCTTTTTTCTCTTTTTTGGAGAATGGAGTGACTAATGCCTGCATAAGATAACATTTATGCGCCTCCCTAGGAGAACTTCTACACGCCTAATCCCTAAGAAAGCAACTGCTAACAGAGTTAGAGAATGTAGACCCACTCGCCTAGTTAACAATGCTTAAATAATTCTCTCAAAGGTCTTGGCCAATAGATTATAAGGAGCCATCTAGAACTATTTACAAAATGTCGTCAACTCAACTGGGTGCGCGCCTACTGATCCCTCGACCTCTCGTATCTTTTTCAAAAAAAATAAAATGTCGTCAACTCTATTCTAATTGGTAATGAGGCAGTTGATGACCTAAGAAGAAGAAGGAAGGGTTGGATGGTGGAATCATCTTGACACCGGTTTTTTTTCCCCAAGAATATTACATCATATATCATATATTGGGTGGGGAGGTTGAAACCTACGACTTCTTTGAGGAAGTAGAGCCATGTAACCTCAAATAGTACAAGGAGTCAAGGATGGTTATTTTTCAGATTTGAATTTTCTTCTTAAAATCCTTCAGCTAGAAATAAGCAAGGATGGTCCAACTTTTAGTCACCTCCAATTTATGCATGATATTGTTCATTTCTTCGCTTATGATGATGGAAACTTCAAAAGTTTGTTTATGATCTTGAAGATATTTGAGAAGCTTTCCATGTTGAAAATAAAATTCAGTACATCTTTTGCCGAGATCAGTTGAGACGCAAGGGGATTTGTTATATATATATATATATATATATATATATATATATATATCACACTAACTGTTCATCAAATATATCTAGAGAGTCCAAAGTTTTAACATGTTTTGGCCGTGTAGAATTAAATACTGAACTTAAGTCGTCAATAATTTGTATGGAAGTTTAAATTCAAAATTATGTCCAACTTGTTTGTCATTCTTAGCTTTTTCGGGTTCTCATTCTGATGTTTGTTTCCTTGCAGCTAAGCAATTCTTGTGTAGATGATCTGCTGTCTGGTGCAATGAAAAAAACTGATGCGTTTTGCTGATCCTGTCCAGGGCGTAAAACGAAGTGTATTTTTCTTTTATGTTTCCTTCTTTTCGTACCAGGTTAACTTTAGAAACTTGTATAAACTTTAACTAGATGTCGTTGAATTGACATTACTTTTGTTAACTTGTTTCTACGTTTCTGATATGAATTGGCTTTTAACAATTTGGTTAAGATCAATTTTACCTTGTTGATATGAGGAGCCTTATGTTGGATAACGCTGGACTCTCTGTCCTTTTTTGTCTGTCATTGATGATAATCTTTTAAGTTGTGTTTGGGTGAACCAAAATAATGAACTGAATAACCTCATTTTGGGCAGGGATAAAAAGAGAAGAACAAAGAACAAAGAACAAAGAGATTTCAATATTCATATGTGATTCAGGTCTTAGCTCTTTCAACCTCTTTTTAAAATTCCATAGTCCATCAAACTCTCAGTAATAAAGGAATCAAATTCCACTTCTCTTTACATCTCTTTCAATCACGTCTATTTTTTCCCACTCTTATAGAGAAAATATTATACTTCAAAAAAAAGCTCTAGTTTCAGAAGTGATCTCAAAAATTGAATGGTTTTTGAAGTTTGGGTAGCCATGAGGAATGCTTGTTAGTGGTTTGAAATACAAGATTTGAAGCATAAATTTTTTAGTCGTTAACACATTTATATAGTTGATGAGTTATGATGAAATATGAAGAATATATTTATCACTTCTCATGCAAATGTGTTTTTCAAGTTGAGTAACTTTTATGACTTTTTTTTCCAGTTTGGCAATATGGCTTGGAATTTAAATATCAACTACGTTTAGATACTTTACTTATCTTCTTTGTCTCCTTCCATATTTTACTGATAAAATATCTAAAATCATTTCATGCTCTTTAATTTTAATAATTATTTTATTTACTTCTAATTATAAAACCATGAAAAAAATTGTTTAAAATATTAACAATAATGAATAAAATTGTTTTTATGTAAAATTTACATTTAAATATTAAAGAACTAAAGTAAGCAGGTAGATAAATAAGACTAAAATAGCAACTAAATATGTGTCTTTTTGGGAAAAAATAGATATATGTTTGGATTTTTTTATTTTTTATTGTTTTTATTATTATTATTATTTTTTTTTTTTGGGGGGGGGGGGGGGGGATAAAAAAAGAGTATTTAAACAAACCTATATATTTGTGAAAATCCTTAGAAACCACAGGCACAAGGAAGTCAACTCGTTCGGTTTCCGTTTCCAATCATTCCGACGAAGCTCCATTCCCAATTATCAAAACTTGATTTCTACGTCGCAGGGAATGGACGCCATTGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCTAAGGATAGCGTTCGTCTCGTCAAAAGATGCCACAAGCCTGATCGCAATGGCATGTCTTTCCTTCACCTCCTTCGTTTTTTTTTCTTATACGAATCCTTGTGAATGAATACAAAGATTAGGAACTGCATTGTCTATTCTTTTCTATGATTCTGATGAATTGCGGCAACGATTTTGACACAGAATTCACTAAAGTGGCATTCCGTACGGCAATCGGTTTCGTCGTGATGGGATTTGTCGGGTTTTTCGTCAAATTGATCTTTATTCCGATTAACAACATAATCGTCGGATCTGGATAGGTTTGATTCTGCTCTGTTCTTGTTTGCTAGGGATTGAAGTTCCTGAAAGAGAGCTTATTGTTGATTTACATATGCCCTTACTAATATTAGTTCCTGAAATTTGTATGCACCAATCTATTCTATGCTTTAACTTTGATTTGCATATATTCTTTCAGGGTTGAAGTTCTTCGTTGTAGGCATTCTGGTTGAACACATTTTCGCTGAGTATTGTTGAAATTGCCACTTCGGTAGTTTGTAATTTTCCCGCCCTGATTTAGTCTTTGACAAGCAAACCTCGTTTGAATATATAATTACACTGTTTATTTTCTTTTCCTTATTTAATAAAGTTTCTCAATTAGTGTTCTCCCTTGGGATAATATTCTGCTGATTAAGATTGCCTTTACAATTATTGTATGGACCCCCTTTTTTTTTTTTTTTGGTTCTTCCCTTACCTTTAAACGC

mRNA sequence

GATGATGTCATCTACTATGAAATTCTCACAACCTTAGATAGAGGCAGAGAAACGAATCGTGAAGGCTGTTACCTTATCTCAACTCTTTTCCGAGTTCATTTGGCTAACCCCTACTACAACCGCCGCCGTCGCCGGCCGATGGACACCAACAATCAAGCCCAATCCTCTCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCTTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGACTTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTTGCACGCATTAAGAAGATCATGAAAGCCGATGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCCACTGCTAGCGGAGTTCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGGGGTATGATGATTGGGAGACCGGCAATGGATCCCACCGGGGTTTATGCTCAGCCGCCGTCCCAGGCGTGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGAGGCAGCAGCGGGCAGGGTAACCTTGATGGTCAGAGGCACAAGGAAGTCAACTCGTTCGGTTTCCGTTTCCAATCATTCCGACGAAGCTCCATTCCCAATTATCAAAACTTGATTTCTACGTCGCAGGGAATGGACGCCATTGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCTAAGGATAGCGTTCGTCTCGTCAAAAGATGCCACAAGCCTGATCGCAATGGCATGTCTTTCCTTCACCTCCTTCAATTCACTAAAGTGGCATTCCGTACGGCAATCGGTTTCGTCGTGATGGGATTTGTCGGGTTTTTCGTCAAATTGATCTTTATTCCGATTAACAACATAATCGTCGGATCTGGATAGGGTTGAAGTTCTTCGTTGTAGGCATTCTGGTTGAACACATTTTCGCTGAGTATTGTTGAAATTGCCACTTCGGTAGTTTGTAATTTTCCCGCCCTGATTTAGTCTTTGACAAGCAAACCTCGTTTGAATATATAATTACACTGTTTATTTTCTTTTCCTTATTTAATAAAGTTTCTCAATTAGTGTTCTCCCTTGGGATAATATTCTGCTGATTAAGATTGCCTTTACAATTATTGTATGGACCCCCTTTTTTTTTTTTTTTGGTTCTTCCCTTACCTTTAAACGC

Coding sequence (CDS)

GATGATGTCATCTACTATGAAATTCTCACAACCTTAGATAGAGGCAGAGAAACGAATCGTGAAGGCTGTTACCTTATCTCAACTCTTTTCCGAGTTCATTTGGCTAACCCCTACTACAACCGCCGCCGTCGCCGGCCGATGGACACCAACAATCAAGCCCAATCCTCTCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCTTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGACTTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTTGCACGCATTAAGAAGATCATGAAAGCCGATGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCCACTGCTAGCGGAGTTCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGGGGTATGATGATTGGGAGACCGGCAATGGATCCCACCGGGGTTTATGCTCAGCCGCCGTCCCAGGCGTGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGAGGCAGCAGCGGGCAGGGTAACCTTGATGGTCAGAGGCACAAGGAAGTCAACTCGTTCGGTTTCCGTTTCCAATCATTCCGACGAAGCTCCATTCCCAATTATCAAAACTTGATTTCTACGTCGCAGGGAATGGACGCCATTGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCTAAGGATAGCGTTCGTCTCGTCAAAAGATGCCACAAGCCTGATCGCAATGGCATGTCTTTCCTTCACCTCCTTCAATTCACTAAAGTGGCATTCCGTACGGCAATCGGTTTCGTCGTGATGGGATTTGTCGGGTTTTTCGTCAAATTGATCTTTATTCCGATTAACAACATAATCGTCGGATCTGGATAG

Protein sequence

DDVIYYEILTTLDRGRETNREGCYLISTLFRVHLANPYYNRRRRRPMDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQRHKEVNSFGFRFQSFRRSSIPNYQNLISTSQGMDAIDSVVDPLREFAKDSVRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

Homology

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BLAST of Lsi06G016440 vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.7e-96
Identity = 194/234 (82.91%), Postives = 201/234 (85.90%), Query Frame = 0


Query: 47  MDTNNQ-----AQSSPYPPPQAPVPA----PPFHHLLQQQQQQLQMFWTFQRQEIEQVND 106
           MDTNNQ     A   P PPP   + A      +HHLLQQQQQQLQ+FWT+QRQEIEQVND
Sbjct: 1   MDTNNQQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVND 60

Query: 107 FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ 166
           FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ
Sbjct: 61  FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ 120

Query: 167 KNDIAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TASGVPYYYPPMGQPAGAP 226
           KNDIAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TASGVPYYYPPMGQPAG P
Sbjct: 121 KNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-P 180

Query: 227 GGMMIGRPAMDPTGVYAQPPSQAWQSVWQTA---AEDGSYASGGSSGQGNLDGQ 266
           GGMMIGRPAMDP GVY QPPSQAWQSVWQT+    +D SY SGGSSGQGNLDGQ
Sbjct: 181 GGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQ 233

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BLAST of Lsi06G016440 vs. ExPASy Swiss-Prot
Match: Q9FMV5 (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 4.1e-92
Identity = 188/246 (76.42%), Postives = 197/246 (80.08%), Query Frame = 0


Query: 48  DTNNQAQSSP---YPPPQA---PVPAPP-------------FHHLLQQQQQQLQMFWTFQ 107
           + NN  Q  P   YPP  A    +P PP             +HHLLQQQQQQLQMFWT+Q
Sbjct: 5   NNNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQ 64

Query: 108 RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA 167
           RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA
Sbjct: 65  RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA 124

Query: 168 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPY 227
           EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPY
Sbjct: 125 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPY 184

Query: 228 YYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAA---EDGSYASGGSSGQ 266
           YYPPMGQPA  PGGMMIGRPAMDP+GVYAQPPSQAWQSVWQ +A   +D SY SGGSSG 
Sbjct: 185 YYPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGH 244

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BLAST of Lsi06G016440 vs. ExPASy Swiss-Prot
Match: A6BLW4 (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.3e-58
Identity = 137/221 (61.99%), Postives = 151/221 (68.33%), Query Frame = 0


Query: 57  PYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQ--VNDFKNHQLPLARIKKIMKA 116
           P  P     PA P HHLLQQQQ QLQ FW +QRQE E+   +DFKNHQLPLARIKKIMKA
Sbjct: 22  PGVPGAGGPPAVPHHHLLQQQQAQLQAFWAYQRQEAERASASDFKNHQLPLARIKKIMKA 81

Query: 117 DEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 176
           DEDVRMISAEAP+LFAKACELFILELTIRSWLHAEENKRRTLQ+ND+AAAI RTD+FDFL
Sbjct: 82  DEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVFDFL 141

Query: 177 VDIVPRDEIKDEAG------LGGMVGAT-----ASGVPYYYPPMGQPAGAPGGMMIGRPA 236
           VDIVPR+E K+E G       GG  GA      A+G+PYYYPPMGQPA       +  PA
Sbjct: 142 VDIVPREEAKEEPGSALGFAAGGPAGAVGAAGPAAGLPYYYPPMGQPAPMMPAWHV--PA 201

Query: 237 MDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDG 265
            DP          AWQ   Q AA D    + GS  +    G
Sbjct: 202 WDP----------AWQ---QGAAPDVDQGAAGSFSEEGQQG 227

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BLAST of Lsi06G016440 vs. ExPASy Swiss-Prot
Match: Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.4e-53
Identity = 116/178 (65.17%), Postives = 133/178 (74.72%), Query Frame = 0


Query: 68  PPFHHLLQQQQ----QQLQMFWTFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISA 127
           P +H + QQQQ    QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISA
Sbjct: 32  PAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISA 91

Query: 128 EAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEI 187
           EAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR+++
Sbjct: 92  EAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDL 151

Query: 188 KDEA-GLGGMVGATASGVPY-YYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQ 240
           +DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P   WQ
Sbjct: 152 RDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP--MWQ 206

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BLAST of Lsi06G016440 vs. ExPASy Swiss-Prot
Match: Q8LCG7 (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 206.1 bits (523), Expect = 7.1e-52
Identity = 103/137 (75.18%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 71  HHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFA 130
           HH  QQQQQQLQMFW  Q QEIE   DFKNH LPLARIKKIMKADEDVRMISAEAP++FA
Sbjct: 45  HHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFA 104

Query: 131 KACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLG 190
           KACE+FILELT+R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E GLG
Sbjct: 105 KACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE-GLG 164

Query: 191 ---GMVGATASGVPYYY 205
              G + +     PYYY
Sbjct: 165 VTKGTIPSVVGSPPYYY 180

[Close]

BLAST of Lsi06G016440 vs. ExPASy TrEMBL
Match: A0A5D3BF73 (Nuclear transcription factor Y subunit C-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00510 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 5.9e-118
Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQR 267
           TGVYAQPPSQAWQSVWQTAAEDGSYASG SSGQGNLDGQR
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQR 220

[Close]

BLAST of Lsi06G016440 vs. ExPASy TrEMBL
Match: A0A1S3CLW7 (nuclear transcription factor Y subunit C-1 OS=Cucumis melo OX=3656 GN=LOC103502320 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 2.2e-117
Identity = 217/219 (99.09%), Postives = 218/219 (99.54%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 266
           TGVYAQPPSQAWQSVWQTAAEDGSYASG SSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQ 219

[Close]

BLAST of Lsi06G016440 vs. ExPASy TrEMBL
Match: A0A6J1C352 (nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 GN=LOC111007012 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 3.8e-117
Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           M++NNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 266
           TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Lsi06G016440 vs. ExPASy TrEMBL
Match: A0A0A0LNK7 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G001515 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 8.5e-117
Identity = 216/219 (98.63%), Postives = 217/219 (99.09%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           MD NNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDANNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 266
           TGVYAQPPSQAWQSVWQTAAEDGSYASG SSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQ 219

[Close]

BLAST of Lsi06G016440 vs. ExPASy TrEMBL
Match: A0A6J1JJG4 (nuclear transcription factor Y subunit C-1 OS=Cucurbita maxima OX=3661 GN=LOC111484989 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 3.6e-115
Identity = 213/219 (97.26%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           M++NNQAQSSPYPPPQAPVPAPP HHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 266
           TGVYAQPPSQAWQSVWQ AAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Lsi06G016440 vs. NCBI nr
Match: KAA0057769.1 (nuclear transcription factor Y subunit C-1 [Cucumis melo var. makuwa] >TYJ98450.1 nuclear transcription factor Y subunit C-1 [Cucumis melo var. makuwa])

HSP 1 Score: 434.1 bits (1115), Expect = 1.2e-117
Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQR 267
           TGVYAQPPSQAWQSVWQTAAEDGSYASG SSGQGNLDGQR
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQR 220

[Close]

BLAST of Lsi06G016440 vs. NCBI nr
Match: XP_038878995.1 (nuclear transcription factor Y subunit C-1 [Benincasa hispida])

HSP 1 Score: 433.0 bits (1112), Expect = 2.7e-117
Identity = 217/219 (99.09%), Postives = 218/219 (99.54%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           MDTNNQ QSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDTNNQTQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 266
           TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Lsi06G016440 vs. NCBI nr
Match: XP_008464428.1 (PREDICTED: nuclear transcription factor Y subunit C-1 [Cucumis melo])

HSP 1 Score: 432.2 bits (1110), Expect = 4.6e-117
Identity = 217/219 (99.09%), Postives = 218/219 (99.54%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 266
           TGVYAQPPSQAWQSVWQTAAEDGSYASG SSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQ 219

[Close]

BLAST of Lsi06G016440 vs. NCBI nr
Match: XP_022134838.1 (nuclear transcription factor Y subunit C-1-like [Momordica charantia])

HSP 1 Score: 431.4 bits (1108), Expect = 7.9e-117
Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           M++NNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 266
           TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Lsi06G016440 vs. NCBI nr
Match: XP_004138046.1 (nuclear transcription factor Y subunit C-1 [Cucumis sativus] >KGN63480.1 hypothetical protein Csa_013346 [Cucumis sativus])

HSP 1 Score: 430.3 bits (1105), Expect = 1.8e-116
Identity = 216/219 (98.63%), Postives = 217/219 (99.09%), Query Frame = 0


Query: 47  MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLA 106
           MD NNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFW+FQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDANNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 107 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 166
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 167 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 226
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 227 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 266
           TGVYAQPPSQAWQSVWQTAAEDGSYASG SSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQ 219

[Close]

BLAST of Lsi06G016440 vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 )

HSP 1 Score: 353.6 bits (906), Expect = 1.9e-97
Identity = 194/234 (82.91%), Postives = 201/234 (85.90%), Query Frame = 0


Query: 47  MDTNNQ-----AQSSPYPPPQAPVPA----PPFHHLLQQQQQQLQMFWTFQRQEIEQVND 106
           MDTNNQ     A   P PPP   + A      +HHLLQQQQQQLQ+FWT+QRQEIEQVND
Sbjct: 1   MDTNNQQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVND 60

Query: 107 FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ 166
           FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ
Sbjct: 61  FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ 120

Query: 167 KNDIAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TASGVPYYYPPMGQPAGAP 226
           KNDIAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TASGVPYYYPPMGQPAG P
Sbjct: 121 KNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-P 180

Query: 227 GGMMIGRPAMDPTGVYAQPPSQAWQSVWQTA---AEDGSYASGGSSGQGNLDGQ 266
           GGMMIGRPAMDP GVY QPPSQAWQSVWQT+    +D SY SGGSSGQGNLDGQ
Sbjct: 181 GGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQ 233

[Close]

BLAST of Lsi06G016440 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 339.7 bits (870), Expect = 2.9e-93
Identity = 188/246 (76.42%), Postives = 197/246 (80.08%), Query Frame = 0


Query: 48  DTNNQAQSSP---YPPPQA---PVPAPP-------------FHHLLQQQQQQLQMFWTFQ 107
           + NN  Q  P   YPP  A    +P PP             +HHLLQQQQQQLQMFWT+Q
Sbjct: 5   NNNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQ 64

Query: 108 RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA 167
           RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA
Sbjct: 65  RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA 124

Query: 168 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPY 227
           EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPY
Sbjct: 125 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPY 184

Query: 228 YYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAA---EDGSYASGGSSGQ 266
           YYPPMGQPA  PGGMMIGRPAMDP+GVYAQPPSQAWQSVWQ +A   +D SY SGGSSG 
Sbjct: 185 YYPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGH 244

[Close]

BLAST of Lsi06G016440 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 339.7 bits (870), Expect = 2.9e-93
Identity = 188/246 (76.42%), Postives = 197/246 (80.08%), Query Frame = 0


Query: 48  DTNNQAQSSP---YPPPQA---PVPAPP-------------FHHLLQQQQQQLQMFWTFQ 107
           + NN  Q  P   YPP  A    +P PP             +HHLLQQQQQQLQMFWT+Q
Sbjct: 5   NNNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQ 64

Query: 108 RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA 167
           RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA
Sbjct: 65  RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA 124

Query: 168 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPY 227
           EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPY
Sbjct: 125 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPY 184

Query: 228 YYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAA---EDGSYASGGSSGQ 266
           YYPPMGQPA  PGGMMIGRPAMDP+GVYAQPPSQAWQSVWQ +A   +D SY SGGSSG 
Sbjct: 185 YYPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGH 244

[Close]

BLAST of Lsi06G016440 vs. TAIR 10
Match: AT1G54830.2 (nuclear factor Y, subunit C3 )

HSP 1 Score: 209.1 bits (531), Expect = 5.9e-54
Identity = 116/178 (65.17%), Postives = 133/178 (74.72%), Query Frame = 0


Query: 68  PPFHHLLQQQQ----QQLQMFWTFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISA 127
           P +H + QQQQ    QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISA
Sbjct: 32  PAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISA 91

Query: 128 EAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEI 187
           EAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR+++
Sbjct: 92  EAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDL 151

Query: 188 KDEA-GLGGMVGATASGVPY-YYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQ 240
           +DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P   WQ
Sbjct: 152 RDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP--MWQ 206

[Close]

BLAST of Lsi06G016440 vs. TAIR 10
Match: AT1G54830.1 (nuclear factor Y, subunit C3 )

HSP 1 Score: 209.1 bits (531), Expect = 5.9e-54
Identity = 116/178 (65.17%), Postives = 133/178 (74.72%), Query Frame = 0


Query: 68  PPFHHLLQQQQ----QQLQMFWTFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISA 127
           P +H + QQQQ    QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISA
Sbjct: 32  PAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISA 91

Query: 128 EAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEI 187
           EAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR+++
Sbjct: 92  EAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDL 151

Query: 188 KDEA-GLGGMVGATASGVPY-YYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQ 240
           +DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P   WQ
Sbjct: 152 RDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP--MWQ 206

The following BLAST results are available for this feature:

BLAST of Lsi06G016440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMP0	2.7e-96	82.91	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FMV5	4.1e-92	76.42	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
A6BLW4	1.3e-58	61.99	Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9ZVL3	8.4e-53	65.17	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q8LCG7	7.1e-52	75.18	Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Lsi06G016440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BF73	5.9e-118	99.09	Nuclear transcription factor Y subunit C-1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CLW7	2.2e-117	99.09	nuclear transcription factor Y subunit C-1 OS=Cucumis melo OX=3656 GN=LOC1035023...	[more]
A0A6J1C352	3.8e-117	98.63	nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 G...	[more]
A0A0A0LNK7	8.5e-117	98.63	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G0015...	[more]
A0A6J1JJG4	3.6e-115	97.26	nuclear transcription factor Y subunit C-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Lsi06G016440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057769.1	1.2e-117	99.09	nuclear transcription factor Y subunit C-1 [Cucumis melo var. makuwa] >TYJ98450....	[more]
XP_038878995.1	2.7e-117	99.09	nuclear transcription factor Y subunit C-1 [Benincasa hispida]	[more]
XP_008464428.1	4.6e-117	99.09	PREDICTED: nuclear transcription factor Y subunit C-1 [Cucumis melo]	[more]
XP_022134838.1	7.9e-117	98.63	nuclear transcription factor Y subunit C-1-like [Momordica charantia]	[more]
XP_004138046.1	1.8e-116	98.63	nuclear transcription factor Y subunit C-1 [Cucumis sativus] >KGN63480.1 hypothe...	[more]

BLAST of Lsi06G016440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48590.1	1.9e-97	82.91	nuclear factor Y, subunit C1	[more]
AT5G63470.1	2.9e-93	76.42	nuclear factor Y, subunit C4	[more]
AT5G63470.2	2.9e-93	76.42	nuclear factor Y, subunit C4	[more]
AT1G54830.2	5.9e-54	65.17	nuclear factor Y, subunit C3	[more]
AT1G54830.1	5.9e-54	65.17	nuclear factor Y, subunit C3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023391	Protein translocase SecE domain superfamily	GENE3D	1.20.5.820	Preprotein translocase SecE subunit	coord: 304..373 e-value: 3.4E-22 score: 79.9
IPR023391	Protein translocase SecE domain superfamily	SUPERFAMILY	103456	Preprotein translocase SecE subunit	coord: 302..370
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 102..165 e-value: 5.4E-17 score: 61.8
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 70..180 e-value: 1.8E-45 score: 156.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 65..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..64
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 48..265
None	No IPR available	PANTHER	PTHR10252:SF107	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4	coord: 48..265
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	HAMAP	MF_00422	SecE	coord: 306..369 score: 10.886962

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G016440.1	Lsi06G016440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006605	protein targeting
biological_process	GO:0045492	xylan biosynthetic process
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016020	membrane
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0046982	protein heterodimerization activity